Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Reverse (-)

20745382 .. 20746265

Gene Structure 884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGACACCATTACTGAGAACCATCTGAATATGAAAGTTTTTAATTGTCATATTGAGCATCCATTTCCCATAGAGCCACCTGCAGAGGCTGCGTCTCCACCTCCCCAACCTCTTAAAATGACAAAGGAGGAACGGAAGAAACTGCGAACTCTAAGGCGTGTGGCAAAAGAAATGGAGAAACGGGAGATGATTAGTCAAGGAAGGGTTGAACCACAAAAATCAAAGGTGAAAATGAGCAACCTAATGAAGGTTCGTGCGTCTGAAGCAACGCAAAACCCAACCAAGCTTGAAAAAGAGATCCGCACAGAAGCTGCTGAGCGTGAACAAGCTCACATGGATAGGAACGTAGCGAGGAAGCTAACTCCTGCAGAGAAACGTGAGAAGAAAGAAAGGAAGCTTTTTGGTGATCCAACGACAGTTGTTGAGACGATTGTGTCGGTGTACAAGATCAACAAGAAGCTATCGGATCCGAAAACAAGATTCAAAGTGAGGATGAATGCAAAACAGAACATATTAACAGGGTTTAGTGTGATGATGGATGGAATGAGTGTTGTTGTGGTTGAGGGTAAGAGAAAAGCAATAAATAGGTACGAGAAGCTGATGCTGAAGCGTATAAACTGGGAAGAAGCAGAGAAGAAGGAAGATGAAGAAGAGAATGGTGGAAACAAGTGTTGTTTGGTTTGGCAAGGAAGTGTTGAGAAACCGAGTTTTCATAGGTTTCATGTACAAGAGTGCTTGACCAAATCCGATGCCAAGAAAGTTTTCAATGATGCTGGTGTTGCTCACTATTGGGATCTTGCTCTCAATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

270

Amino Acids

31.35

Weight (kDa)

9.53

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP3	PF08572	13 - 121	6.8e-34	pre-mRNA processing factor 3 domain
Prp3_C	PF06544	147 - 267	7.3e-40	Small nuclear ribonucleoprotein Prp3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
AasI	GACNNNNNNGTC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	5 cut(s)	292, 401, 461, 474, 801
AcuI	CTGAAG	2 cut(s)	282, 626
AfaI	GTAC	3 cut(s)	443, 590, 726
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	209, 290, 484, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	7 cut(s)	286, 311, 329, 358, 397, 460, 598
AluI	AGCT	7 cut(s)	286, 311, 329, 358, 397, 460, 598
Alw26I	GTCTC	2 cut(s)	99, 419
AlwI	GGATC	5 cut(s)	292, 401, 461, 474, 801
AlwNI	CAGNNNCTG	2 cut(s)	89, 311
ApeKI	GCWGC	2 cut(s)	89, 311
Asp700I	GAANNNNTTC	1 cut(s)	761
AsuHPI	GGTGA	2 cut(s)	238, 416
BamHI	GGATCC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	76, 298
BccI	CCATC	3 cut(s)	30, 529, 533
BcoDI	GTCTC	2 cut(s)	99, 419
BfmI	CTRYAG	2 cut(s)	81, 366
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	90, 312
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	2 cut(s)	91, 313
BmiI	GGNNCC	1 cut(s)	468
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	4 cut(s)	67, 591, 739, 760
BmuI	ACTGGG	1 cut(s)	628
Bpu1102I	GCTNAGC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	623
BseGI	GGATG	3 cut(s)	58, 498, 544
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	6, 306
BseNI	ACTGG	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	76, 298
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	99, 419
BsmBI	CGTCTC	2 cut(s)	99, 419
BsmI	GAATGC	1 cut(s)	502
Bsp1407I	TGTACA	2 cut(s)	441, 724
Bsp143I	GATC	5 cut(s)	297, 406, 447, 466, 793
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	301
BspCNI	CTCAG	2 cut(s)	7, 307
BspLI	GGNNCC	1 cut(s)	468
BspMAI	CTGCAG	2 cut(s)	85, 370
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	5 cut(s)	292, 401, 461, 474, 801
BsrGI	TGTACA	2 cut(s)	441, 724
BsrI	ACTGG	1 cut(s)	623
BssMI	GATC	5 cut(s)	297, 406, 447, 466, 793
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstAUI	TGTACA	2 cut(s)	441, 724
BstDEI	CTNAG	3 cut(s)	15, 152, 315
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	58, 498, 544
BstKTI	GATC	5 cut(s)	300, 409, 450, 469, 796
BstMAI	GTCTC	2 cut(s)	99, 419
BstMBI	GATC	5 cut(s)	297, 406, 447, 466, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 263, 779
BstSFI	CTRYAG	2 cut(s)	81, 366
BstV1I	GCAGC	2 cut(s)	76, 298
BstX2I	RGATCY	3 cut(s)	297, 466, 793
BstYI	RGATCY	3 cut(s)	297, 466, 793
BtsCI	GGATG	3 cut(s)	58, 498, 544
BveI	ACCTGC	1 cut(s)	88
CaiI	CAGNNNCTG	2 cut(s)	89, 311
CseI	GACGC	2 cut(s)	81, 246
Csp6I	GTAC	3 cut(s)	442, 589, 725
CviAII	CATG	2 cut(s)	334, 722
CviJI	RGCY	9 cut(s)	76, 89, 286, 311, 329, 358, 397, 460, 598
CviKI_1	RGCY	9 cut(s)	76, 89, 286, 311, 329, 358, 397, 460, 598
CviQI	GTAC	3 cut(s)	442, 589, 725
DdeI	CTNAG	3 cut(s)	15, 152, 315
DpnI	GATC	5 cut(s)	299, 408, 449, 468, 795
DpnII	GATC	5 cut(s)	297, 406, 447, 466, 793
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco57I	CTGAAG	2 cut(s)	282, 626
EcoNI	CCTNNNNNAGG	1 cut(s)	245
Esp3I	CGTCTC	2 cut(s)	99, 419
FaeI	CATG	2 cut(s)	337, 725
FaiI	YATR	8 cut(s)	32, 51, 71, 335, 512, 614, 714, 723
FatI	CATG	2 cut(s)	333, 721
Fnu4HI	GCNGC	2 cut(s)	90, 312
FokI	GGATG	3 cut(s)	45, 505, 551
Fsp4HI	GCNGC	2 cut(s)	90, 312
GluI	GCNGC	2 cut(s)	90, 312
HgaI	GACGC	2 cut(s)	81, 246
Hin1II	CATG	2 cut(s)	337, 725
HindIII	AAGCTT	2 cut(s)	284, 395
HinfI	GANTC	1 cut(s)	480
HphI	GGTGA	2 cut(s)	238, 416
Hpy166II	GTNNAC	2 cut(s)	323, 442
Hpy188I	TCNGA	5 cut(s)	27, 262, 466, 471, 748
Hpy8I	GTNNAC	2 cut(s)	323, 442
HpyAV	CCTTC	3 cut(s)	195, 241, 631
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	345, 376
HpyCH4V	TGCA	3 cut(s)	83, 368, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 263, 779
HpyF3I	CTNAG	3 cut(s)	15, 152, 315
HpySE526I	ACGT	2 cut(s)	345, 376
Hsp92II	CATG	2 cut(s)	337, 725
Kzo9I	GATC	5 cut(s)	297, 406, 447, 466, 793
LpnPI	CCDG	5 cut(s)	93, 378, 504, 604, 759
Lsp1109I	GCAGC	2 cut(s)	76, 298
LweI	GCATC	4 cut(s)	67, 591, 739, 760
MaeII	ACGT	2 cut(s)	345, 376
MalI	GATC	5 cut(s)	299, 408, 449, 468, 795
MboI	GATC	5 cut(s)	297, 406, 447, 466, 793
MboII	GAAGA	7 cut(s)	148, 394, 635, 646, 653, 659, 662
MflI	RGATCY	3 cut(s)	297, 466, 793
MluCI	AATT	2 cut(s)	43, 805
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	7 cut(s)	79, 111, 120, 121, 345, 483, 556
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	3 cut(s)	42, 114, 515
Mva1269I	GAATGC	1 cut(s)	502
MwoI	GCNNNNNNNGC	3 cut(s)	89, 263, 779
NdeII	GATC	5 cut(s)	297, 406, 447, 466, 793
NlaIII	CATG	2 cut(s)	337, 725
NlaIV	GGNNCC	1 cut(s)	468
PaqCI	CACCTGC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	480
PkrI	GCNGC	2 cut(s)	91, 313
PspN4I	GGNNCC	1 cut(s)	468
PstI	CTGCAG	2 cut(s)	85, 370
PstNI	CAGNNNCTG	2 cut(s)	89, 311
PsuI	RGATCY	3 cut(s)	297, 466, 793
RsaI	GTAC	3 cut(s)	443, 590, 726
RsaNI	GTAC	3 cut(s)	442, 589, 725
SaqAI	TTAA	3 cut(s)	42, 114, 515
SatI	GCNGC	2 cut(s)	90, 312
Sau3AI	GATC	5 cut(s)	297, 406, 447, 466, 793
SfaNI	GCATC	4 cut(s)	67, 591, 739, 760
SfcI	CTRYAG	2 cut(s)	81, 366
Sse9I	AATT	2 cut(s)	43, 805
SsiI	CCGC	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	348, 379
TasI	AATT	2 cut(s)	43, 805
TatI	WGTACW	2 cut(s)	441, 724
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	3 cut(s)	42, 114, 515
Tru9I	TTAA	3 cut(s)	42, 114, 515
TseI	GCWGC	2 cut(s)	89, 311
TspDTI	ATGAA	6 cut(s)	47, 260, 509, 660, 701, 710
TspGWI	ACGGA	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.