Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Reverse (-)

26618102 .. 26622540

Gene Structure 4439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1185000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

ATGGAGAAAGACAAATCGAGCAAACGCGACCGCAGAGATCGAGACAGAGACTACGATAAACATCGCAGCCGTGATGCCGACGAAAAGCGATCGTCAAAGGACTCCGATTACTACCGCCACCACCACCGATCGGACCGCGATTCCAAGCGTGAGCGCTCTCGCGAGCCCCGCGACCACAAATCTCGCCGCGAACGGTCGCGCGAGCCGAGCGAAGACGGCCGGGATGTCTCGCGCGACCACCGTGAGCGGTCCTACGAGCCGAGGGACGAGAGGGAAGGGAGCAGAGAGAGGTCCAGGCATCGGGAAGCGAAGCGCGAGAGGTCAGAGGAGCGAGAAGAATCGAAGCGTAAGAGGAAAGAAAGGGAGAGGAGTGAGGGTCGAGATGGAGAGGGTGATGATTTAGAAGACAAGAAGAGGTCTAGGGTTTCGGAGGGGGAGAGGAAAGAGAGGAAGCGATTCGAGGAAGATGGTCAGGAAGTGAATGGTGGTCAGAAAAAGAGTAGGAGGTTTGGTGACCGCCGAGTAAAGGAGGAAGAGGGCGGAGAGAATGGCGAAGTTGTTGAACGGAGAACTGAATTAAATGTGAATGCGAGTGAGGTTAATGTTAAGAAAGAAGAAGTTGGGGATGATCATATTGGCAATTTCCAGAGCGTCGCCGCCACCCCAAATGGGAGTGGTCGGGTGGGTAATGGCGCTGCTCTGGAACCTACTATGACATCAAGGATTGTGCCTGAGACCTCTTTCGCTCCCATTCATCCCCTTCCTACCAAGGTATCTTCAATTCCTACAACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGAACATCTTCAACTGCTGGGAAAAGTGCGAATCTGTCTCTTGGTGATGTAGAAAAAATCAAGAGAACTTTACAGAAGCAGAAGGAATTGACTGAGAAGCTGAAGAAGCTTAACCAGTTGAAGAAGGAAGGCAATTCAAGCAAAGATGCTAGCCAGAACTTGGAATCGAAGGAGGGACTGAAACCACCAGCTACTACTGCTGGGTTGCTACATGCACCGACCCCATCAACAGCTGTTACTACAGCTGCTTCTGTGGCAACATTTGACTCGTCTGCCCTACCCATATCTGCAGCAGCCGTTCCCAACTTTGAAGCTGTAAAACGTGCACAAGCACTTGCTGCTCAGATGGGGTTCCGTCAGGACCCTGATTTTTCTCCTCTCATAAACTCGTTTCCAGGACAGGTGGCTACTGATGTTGCTGCCCCGCAGAAGCCTACTAAAGCCCCTGTTCTTCGTCTTGATGCTCTTGGAAGGGAAATAGATGAACATGGAAACTTAGTGAATGTGACGAAACCAAACAACCTCAGTACCCTAAAGGTCAACATTAACAAACAGAAGAAAGATGCATTCCAGATTCTTAAACCTGAATTGGATGTGGATCCTGAAAAGAATCCTCATTTTGATCCGGATGTGGGCATTAGTAAAAAATTTTTGAGGCCAAAGAGGATGGGTTTCGCATTTGTAGAGGAAGGAAAATGGACAAGAGATGCTGAGCTTATAAAATTAAAGACTAAATTTGGAGAAGCACAAGCCAAAGAGCAAAGAGCAAAGCAGCAACAGTTTGCAAAGGCAAAGGCAGCGCCAGATATTAATCCAAATTTGATAGAAGTAGGAGAGAGAGTTATCACCAAAGAAAAACCAAAGGATCCAATTCCTGAAATCGAGTGGTGGGATGTGCCACTGTTGCACTCTGGTACTTATAAGGAAGTTGTTGATGGTACAGTAGCTGAAGATAAATTAAAGATAGAGAAAATCACAATCTATATTGAGCATCCTCAACCTATTGAGCCCCCTACTGAGCCAGCTCCTCCACCGCCTCAACCACTGAAGCTGACCAAGAAGGAGCAGAAAAAACTACGTACACAGAAACGTCTGGCCAGAGAGAAAGATAGGCAAGAGATGATTAGACAAGGCCTGCTTGAGCCCCCAAAGCCAAAAGTTAAAATGAGTAATTTGATGAAAGTTCTTGGCTCTGAAGCAACCCAAGATCCAACCAGGCTTGAAAAGGAGATCAGGAGTGCAGCTGCTGAACGTGAACAAGCTCATGTAGACAGGAATATAGCACGGAAGCTCACTCCTGCCGAGCGTCGTGAGAAGAAAGAAAGGAAGCTTTTTGATGACCCTAATAACGTGGAGACAATCGTCTCAGTTTACAGGATCAATGAGCTGTCACATCCAAAGGCCCGCTTCAAGATAGATGTTAATGCGCGAGAGAACCGGCTGACTGGATCTTGTGTGATATCAGATGGTATTAATGTTGTGGTTGTTGAAGGTGGAAGCAAGTCTATCAAGAGGTATGCAAAGGTTATGCTTAGGCGCATAAACTGGGCTGAGGCAGTAAAAGAAGAGGAAGAAGATGATGATGCTGACGATGACAAGCCTCCTAACAAGTGCGTGTTAGTATGGCAAGGAAGTGTTGCAAGACGGAGCTTCAATAGGTTTTCTGTTCATGAATGCATGACTGAAGCCGCTGCCCGGAAGGTTTTTGCCGATGCTGGCGTTGCTCATTACTGGGATCTTGCGGTCAACTTTCAAGATGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

874

Amino Acids

99.0

Weight (kDa)

9.31

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP3	PF08572	489 - 717	5.4e-64	pre-mRNA processing factor 3 domain
Prp3_C	PF06544	741 - 866	4.6e-44	Small nuclear ribonucleoprotein Prp3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1574, 1776
AccB7I	CCANNNNNTGG	1 cut(s)	1015
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	2124
AccIII	TCCGGA	1 cut(s)	1480
AclWI	GGATC	9 cut(s)	1448, 1461, 1472, 1715, 1728, 2057, 2240, 2311, 2598
AcoI	YGGCCR	2 cut(s)	217, 1950
AcsI	RAATTY	3 cut(s)	1502, 1589, 1672
AcuI	CTGAAG	5 cut(s)	977, 1824, 1922, 2070, 2559
AfaI	GTAC	5 cut(s)	850, 1384, 1771, 1795, 1936
AfeI	AGCGCT	1 cut(s)	155
AfiI	CCNNNNNNNGG	7 cut(s)	130, 300, 526, 669, 1015, 1487, 2550
AjnI	CCWGG	3 cut(s)	293, 1249, 2069
Alw21I	GWGCWC	1 cut(s)	1183
Alw26I	GTCTC	7 cut(s)	36, 42, 232, 728, 897, 2204, 2224
Alw44I	GTGCAC	1 cut(s)	1179
AlwI	GGATC	9 cut(s)	1448, 1461, 1472, 1715, 1728, 2057, 2240, 2311, 2598
AlwNI	CAGNNNCTG	2 cut(s)	1802, 2102
Aor13HI	TCCGGA	1 cut(s)	1480
Aor51HI	AGCGCT	1 cut(s)	155
AoxI	GGCC	5 cut(s)	217, 1511, 1950, 1987, 2256
ApaLI	GTGCAC	1 cut(s)	1179
ApoI	RAATTY	3 cut(s)	1502, 1589, 1672
AseI	ATTAAT	2 cut(s)	1665, 2328
Asp700I	GAANNNNTTC	2 cut(s)	455, 862
AspLEI	GCGC	8 cut(s)	156, 201, 234, 315, 695, 1657, 2284, 2394
AspS9I	GGNCC	5 cut(s)	133, 249, 291, 1216, 2257
AsuC2I	CCSGG	2 cut(s)	221, 2551
AsuHPI	GGTGA	4 cut(s)	404, 524, 911, 1693
AsuNHI	GCTAGC	1 cut(s)	1004
AvaII	GGWCC	4 cut(s)	133, 249, 291, 1216
BaeGI	GKGCMC	1 cut(s)	1183
BaeI	ACNNNNGTAYC	4 cut(s)	756, 789, 1366, 1399
BalI	TGGCCA	1 cut(s)	1952
BamHI	GGATCC	2 cut(s)	1453, 1720
BanII	GRGCYC	3 cut(s)	168, 1866, 2001
BbsI	GAAGAC	2 cut(s)	219, 411
Bbv12I	GWGCWC	1 cut(s)	1183
BbvCI	CCTCAGC	1 cut(s)	2406
BccI	CCATC	8 cut(s)	377, 461, 848, 1087, 1195, 1516, 1784, 2315
BceAI	ACGGC	3 cut(s)	54, 232, 1136
BciT130I	CCWGG	3 cut(s)	295, 1251, 2071
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	221, 2551
BcoDI	GTCTC	7 cut(s)	36, 42, 232, 728, 897, 2204, 2224
BfaI	CTAG	3 cut(s)	420, 846, 1005
BfmI	CTRYAG	2 cut(s)	1095, 1143
BfoI	RGCGCY	3 cut(s)	157, 696, 1658
BglII	AGATCT	1 cut(s)	821
BlpI	GCTNAGC	1 cut(s)	1566
Bme1390I	CCNGG	5 cut(s)	221, 295, 1251, 2071, 2551
Bme18I	GGWCC	4 cut(s)	133, 249, 291, 1216
BmgT120I	GGNCC	5 cut(s)	133, 249, 291, 1216, 2257
BmiI	GGNNCC	5 cut(s)	705, 1208, 1218, 1455, 1722
BmrFI	CCNGG	5 cut(s)	221, 295, 1251, 2071, 2551
BmrI	ACTGGG	2 cut(s)	2410, 2596
BmsI	GCATC	9 cut(s)	64, 307, 991, 1306, 1408, 1552, 1855, 2428, 2557
BmtI	GCTAGC	1 cut(s)	1008
BmuI	ACTGGG	2 cut(s)	2410, 2596
BoxI	GACNNNNGTC	1 cut(s)	2216
BpiI	GAAGAC	2 cut(s)	219, 411
Bpu10I	CCTNAGC	2 cut(s)	2387, 2406
Bpu1102I	GCTNAGC	1 cut(s)	1566
BpuEI	CTTGAG	1 cut(s)	2015
BpuMI	CCSGG	2 cut(s)	221, 2551
BsaAI	YACGTR	1 cut(s)	1934
BsaBI	GATNNNNATC	3 cut(s)	60, 1452, 1665
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	2 cut(s)	260, 768
BsaWI	WCCGGW	1 cut(s)	1480
BsaXI	ACNNNNNCTCC	6 cut(s)	361, 391, 496, 526, 1680, 1710
Bsc4I	CCNNNNNNNGG	7 cut(s)	130, 300, 526, 669, 1015, 1487, 2550
Bse118I	RCCGGY	1 cut(s)	2292
Bse1I	ACTGG	4 cut(s)	970, 2305, 2405, 2591
Bse8I	GATNNNNATC	3 cut(s)	60, 1452, 1665
BseAI	TCCGGA	1 cut(s)	1480
BseBI	CCWGG	3 cut(s)	295, 1251, 2071
BseDI	CCNNGG	2 cut(s)	260, 768
BseGI	GGATG	9 cut(s)	229, 631, 754, 1453, 1489, 1527, 1753, 1846, 2248
BseJI	GATNNNNATC	3 cut(s)	60, 1452, 1665
BseLI	CCNNNNNNNGG	7 cut(s)	130, 300, 526, 669, 1015, 1487, 2550
BseMII	CTCAG	8 cut(s)	723, 939, 1211, 1393, 1557, 1863, 2235, 2397
BseNI	ACTGG	4 cut(s)	970, 2305, 2405, 2591
BseRI	GAGGAG	4 cut(s)	341, 382, 1221, 1872
BseSI	GKGCMC	1 cut(s)	1183
BseX3I	CGGCCG	1 cut(s)	217
BseYI	CCCAGC	2 cut(s)	872, 1055
BsgI	GTGCAG	1 cut(s)	2115
Bsh1285I	CGRYCG	5 cut(s)	31, 92, 131, 197, 220
BshFI	GGCC	5 cut(s)	219, 1513, 1952, 1989, 2258
BsiEI	CGRYCG	5 cut(s)	31, 92, 131, 197, 220
BsiHKAI	GWGCWC	1 cut(s)	1183
BsiSI	CCGG	4 cut(s)	220, 1481, 2293, 2551
BslFI	GGGAC	2 cut(s)	278, 1044
BslI	CCNNNNNNNGG	7 cut(s)	130, 300, 526, 669, 1015, 1487, 2550
BsmAI	GTCTC	7 cut(s)	36, 42, 232, 728, 897, 2204, 2224
BsmBI	CGTCTC	1 cut(s)	2224
BsmFI	GGGAC	2 cut(s)	278, 1044
BsmI	GAATGC	3 cut(s)	592, 1421, 2534
BsnI	GGCC	5 cut(s)	219, 1513, 1952, 1989, 2258
Bso31I	GGTCTC	1 cut(s)	728
Bsp1286I	GDGCHC	4 cut(s)	168, 1183, 1866, 2001
Bsp13I	TCCGGA	1 cut(s)	1480
Bsp1720I	GCTNAGC	1 cut(s)	1566
Bsp68I	TCGCGA	1 cut(s)	162
BspANI	GGCC	5 cut(s)	219, 1513, 1952, 1989, 2258
BspCNI	CTCAG	8 cut(s)	724, 940, 1210, 1392, 1558, 1864, 2234, 2398
BspEI	TCCGGA	1 cut(s)	1480
BspHI	TCATGA	2 cut(s)	826, 2524
BspLI	GGNNCC	5 cut(s)	705, 1208, 1218, 1455, 1722
BspMAI	CTGCAG	1 cut(s)	1147
BspOI	GCTAGC	1 cut(s)	1008
BspPI	GGATC	9 cut(s)	1448, 1461, 1472, 1715, 1728, 2057, 2240, 2311, 2598
BspTNI	GGTCTC	1 cut(s)	728
BsrBI	CCGCTC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	2292
BsrI	ACTGG	4 cut(s)	970, 2305, 2405, 2591
BssAI	RCCGGY	1 cut(s)	2292
BssECI	CCNNGG	2 cut(s)	260, 768
BssT1I	CCWWGG	1 cut(s)	768
Bst2UI	CCWGG	3 cut(s)	295, 1251, 2071
Bst4CI	ACNGT	5 cut(s)	195, 242, 1635, 1758, 1798
Bst6I	CTCTTC	3 cut(s)	407, 528, 2415
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstBAI	YACGTR	1 cut(s)	1934
BstC8I	GCNNGC	7 cut(s)	164, 203, 1006, 1878, 1991, 2260, 2572
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	9 cut(s)	229, 631, 754, 1453, 1489, 1527, 1753, 1846, 2248
BstH2I	RGCGCY	3 cut(s)	157, 696, 1658
BstHHI	GCGC	8 cut(s)	156, 201, 234, 315, 695, 1657, 2284, 2394
BstMAI	GTCTC	7 cut(s)	36, 42, 232, 728, 897, 2204, 2224
BstMCI	CGRYCG	5 cut(s)	31, 92, 131, 197, 220
BstNI	CCWGG	3 cut(s)	295, 1251, 2071
BstNSI	RCATGY	1 cut(s)	1070
BstPAI	GACNNNNGTC	1 cut(s)	2216
BstPI	GGTNACC	1 cut(s)	512
BstSCI	CCNGG	5 cut(s)	219, 293, 1249, 2069, 2549
BstSFI	CTRYAG	2 cut(s)	1095, 1143
BstSLI	GKGCMC	1 cut(s)	1183
BstSNI	TACGTA	1 cut(s)	1934
BstV2I	GAAGAC	2 cut(s)	219, 411
BstX2I	RGATCY	6 cut(s)	821, 1453, 1720, 2062, 2303, 2590
BstYI	RGATCY	6 cut(s)	821, 1453, 1720, 2062, 2303, 2590
BstZI	CGGCCG	1 cut(s)	217
BsuRI	GGCC	5 cut(s)	219, 1513, 1952, 1989, 2258
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	9 cut(s)	229, 631, 754, 1453, 1489, 1527, 1753, 1846, 2248
BtsIMutI	CAGTG	2 cut(s)	1754, 1898
BtuMI	TCGCGA	1 cut(s)	162
Cac8I	GCNNGC	7 cut(s)	164, 203, 1006, 1878, 1991, 2260, 2572
CaiI	CAGNNNCTG	2 cut(s)	1802, 2102
CciI	TCATGA	2 cut(s)	826, 2524
CfoI	GCGC	8 cut(s)	156, 201, 234, 315, 695, 1657, 2284, 2394
Cfr10I	RCCGGY	1 cut(s)	2292
Cfr13I	GGNCC	5 cut(s)	133, 249, 291, 1216, 2257
CpoI	CGGWCCG	1 cut(s)	133
CseI	GACGC	2 cut(s)	640, 2150
Csp6I	GTAC	5 cut(s)	849, 1383, 1770, 1794, 1935
CspI	CGGWCCG	1 cut(s)	133
CviAII	CATG	7 cut(s)	827, 836, 1067, 1343, 2120, 2525, 2533
CviQI	GTAC	5 cut(s)	849, 1383, 1770, 1794, 1935
EaeI	YGGCCR	2 cut(s)	217, 1950
EagI	CGGCCG	1 cut(s)	217
Eam1104I	CTCTTC	3 cut(s)	407, 528, 2415
EarI	CTCTTC	3 cut(s)	407, 528, 2415
EciI	GGCGGA	1 cut(s)	555
EclXI	CGGCCG	1 cut(s)	217
Eco105I	TACGTA	1 cut(s)	1934
Eco130I	CCWWGG	1 cut(s)	768
Eco147I	AGGCCT	1 cut(s)	1989
Eco24I	GRGCYC	3 cut(s)	168, 1866, 2001
Eco31I	GGTCTC	1 cut(s)	728
Eco32I	GATATC	1 cut(s)	2316
Eco47I	GGWCC	4 cut(s)	133, 249, 291, 1216
Eco47III	AGCGCT	1 cut(s)	155
Eco52I	CGGCCG	1 cut(s)	217
Eco57I	CTGAAG	5 cut(s)	977, 1824, 1922, 2070, 2559
Eco91I	GGTNACC	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	1216
EcoO65I	GGTNACC	1 cut(s)	512
EcoRII	CCWGG	3 cut(s)	293, 1249, 2069
EcoRV	GATATC	1 cut(s)	2316
EcoT14I	CCWWGG	1 cut(s)	768
EcoT22I	ATGCAT	2 cut(s)	1423, 2534
EcoT38I	GRGCYC	3 cut(s)	168, 1866, 2001
ErhI	CCWWGG	1 cut(s)	768
Esp3I	CGTCTC	1 cut(s)	2224
FaeI	CATG	7 cut(s)	830, 839, 1070, 1346, 2123, 2528, 2536
FalI	AAGNNNNNCTT	4 cut(s)	1977, 2009, 2246, 2278
FaqI	GGGAC	2 cut(s)	278, 1044
FatI	CATG	7 cut(s)	826, 835, 1066, 1342, 2119, 2524, 2532
FauI	CCCGC	3 cut(s)	176, 1287, 2267
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	2124
FokI	GGATG	9 cut(s)	236, 638, 741, 1460, 1496, 1534, 1760, 1833, 2235
FriOI	GRGCYC	3 cut(s)	168, 1866, 2001
FspBI	CTAG	3 cut(s)	420, 846, 1005
GlaI	GCGC	8 cut(s)	155, 200, 233, 314, 694, 1656, 2283, 2393
GsaI	CCCAGC	2 cut(s)	876, 1059
HaeII	RGCGCY	3 cut(s)	157, 696, 1658
HaeIII	GGCC	5 cut(s)	219, 1513, 1952, 1989, 2258
HapII	CCGG	4 cut(s)	220, 1481, 2293, 2551
HgaI	GACGC	2 cut(s)	640, 2150
HhaI	GCGC	8 cut(s)	156, 201, 234, 315, 695, 1657, 2284, 2394
Hin1II	CATG	7 cut(s)	830, 839, 1070, 1346, 2123, 2528, 2536
Hin6I	GCGC	8 cut(s)	154, 199, 232, 313, 693, 1655, 2282, 2392
HinP1I	GCGC	8 cut(s)	154, 199, 232, 313, 693, 1655, 2282, 2392
HincII	GTYRAC	2 cut(s)	1396, 2602
HindII	GTYRAC	2 cut(s)	1396, 2602
HindIII	AAGCTT	2 cut(s)	962, 2183
HinfI	GANTC	9 cut(s)	101, 140, 338, 456, 886, 1019, 1121, 1429, 1465
HpaII	CCGG	4 cut(s)	220, 1481, 2293, 2551
HphI	GGTGA	4 cut(s)	404, 524, 911, 1693
Hpy166II	GTNNAC	7 cut(s)	1181, 1396, 1937, 2111, 2125, 2227, 2602
Hpy188I	TCNGA	8 cut(s)	106, 133, 325, 430, 492, 1200, 2050, 2320
Hpy8I	GTNNAC	7 cut(s)	1181, 1396, 1937, 2111, 2125, 2227, 2602
Hpy99I	CGWCG	3 cut(s)	83, 656, 2166
HpyCH4III	ACNGT	5 cut(s)	195, 242, 1635, 1758, 1798
HpyCH4IV	ACGT	5 cut(s)	1177, 1933, 1945, 2107, 2205
HpySE526I	ACGT	5 cut(s)	1177, 1933, 1945, 2107, 2205
Hsp92II	CATG	7 cut(s)	830, 839, 1070, 1346, 2123, 2528, 2536
HspAI	GCGC	8 cut(s)	154, 199, 232, 313, 693, 1655, 2282, 2392
Kpn2I	TCCGGA	1 cut(s)	1480
Ksp22I	TGATCA	1 cut(s)	628
LmnI	GCTCC	6 cut(s)	279, 328, 751, 1885, 1918, 2502
LweI	GCATC	9 cut(s)	64, 307, 991, 1306, 1408, 1552, 1855, 2428, 2557
MaeI	CTAG	3 cut(s)	420, 846, 1005
MaeII	ACGT	5 cut(s)	1177, 1933, 1945, 2107, 2205
MaeIII	GTNAC	4 cut(s)	512, 1090, 1360, 2244
MbiI	CCGCTC	1 cut(s)	247
MflI	RGATCY	6 cut(s)	821, 1453, 1720, 2062, 2303, 2590
MhlI	GDGCHC	4 cut(s)	168, 1183, 1866, 2001
MlsI	TGGCCA	1 cut(s)	1952
MluNI	TGGCCA	1 cut(s)	1952
MlyI	GAGTC	2 cut(s)	95, 1115
MmeI	TCCRAC	1 cut(s)	2090
Mox20I	TGGCCA	1 cut(s)	1952
Mph1103I	ATGCAT	2 cut(s)	1423, 2534
MroI	TCCGGA	1 cut(s)	1480
MroXI	GAANNNNTTC	2 cut(s)	455, 862
MscI	TGGCCA	1 cut(s)	1952
Msp20I	TGGCCA	1 cut(s)	1952
MspA1I	CMGCKG	4 cut(s)	1088, 1100, 2099, 2546
MspI	CCGG	4 cut(s)	220, 1481, 2293, 2551
MspR9I	CCNGG	5 cut(s)	221, 295, 1251, 2071, 2551
Mva1269I	GAATGC	3 cut(s)	592, 1421, 2534
MvaI	CCWGG	3 cut(s)	295, 1251, 2071
NciI	CCSGG	2 cut(s)	221, 2551
NheI	GCTAGC	1 cut(s)	1004
NlaIII	CATG	7 cut(s)	830, 839, 1070, 1346, 2123, 2528, 2536
NlaIV	GGNNCC	5 cut(s)	705, 1208, 1218, 1455, 1722
NmeAIII	GCCGAG	4 cut(s)	231, 285, 545, 2182
NmuCI	GTSAC	3 cut(s)	512, 1360, 2244
NruI	TCGCGA	1 cut(s)	162
NsiI	ATGCAT	2 cut(s)	1423, 2534
NspI	RCATGY	1 cut(s)	1070
PagI	TCATGA	2 cut(s)	826, 2524
PceI	AGGCCT	1 cut(s)	1989
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PctI	GAATGC	3 cut(s)	592, 1421, 2534
PdmI	GAANNNNTTC	2 cut(s)	455, 862
PfeI	GAWTC	7 cut(s)	140, 338, 456, 886, 1019, 1429, 1465
PflMI	CCANNNNNTGG	1 cut(s)	1015
PfoI	TCCNGGA	1 cut(s)	1249
Ple19I	CGATCG	2 cut(s)	92, 131
PleI	GAGTC	2 cut(s)	95, 1115
PpsI	GAGTC	2 cut(s)	95, 1115
Ppu21I	YACGTR	1 cut(s)	1934
PpuMI	RGGWCCY	1 cut(s)	1216
PshAI	GACNNNNGTC	1 cut(s)	2216
PshBI	ATTAAT	2 cut(s)	1665, 2328
PsiI	TTATAA	2 cut(s)	1574, 1776
Psp5II	RGGWCCY	1 cut(s)	1216
Psp6I	CCWGG	3 cut(s)	293, 1249, 2069
PspEI	GGTNACC	1 cut(s)	512
PspFI	CCCAGC	2 cut(s)	872, 1055
PspGI	CCWGG	3 cut(s)	293, 1249, 2069
PspN4I	GGNNCC	5 cut(s)	705, 1208, 1218, 1455, 1722
PspPI	GGNCC	5 cut(s)	133, 249, 291, 1216, 2257
PspPPI	RGGWCCY	1 cut(s)	1216
PstI	CTGCAG	1 cut(s)	1147
PstNI	CAGNNNCTG	2 cut(s)	1802, 2102
PsuI	RGATCY	6 cut(s)	821, 1453, 1720, 2062, 2303, 2590
PvuI	CGATCG	2 cut(s)	92, 131
PvuII	CAGCTG	3 cut(s)	1088, 1100, 2099
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	5 cut(s)	850, 1384, 1771, 1795, 1936
RsaNI	GTAC	5 cut(s)	849, 1383, 1770, 1794, 1935
Rsr2I	CGGWCCG	1 cut(s)	133
RsrII	CGGWCCG	1 cut(s)	133
Sau96I	GGNCC	5 cut(s)	133, 249, 291, 1216, 2257
SchI	GAGTC	2 cut(s)	95, 1115
ScrFI	CCNGG	5 cut(s)	221, 295, 1251, 2071, 2551
SduI	GDGCHC	4 cut(s)	168, 1183, 1866, 2001
SfaNI	GCATC	9 cut(s)	64, 307, 991, 1306, 1408, 1552, 1855, 2428, 2557
SfcI	CTRYAG	2 cut(s)	1095, 1143
SinI	GGWCC	4 cut(s)	133, 249, 291, 1216
SmlI	CTYRAG	1 cut(s)	1994
SmoI	CTYRAG	1 cut(s)	1994
SnaBI	TACGTA	1 cut(s)	1934
SseBI	AGGCCT	1 cut(s)	1989
SspMI	CTAG	3 cut(s)	420, 846, 1005
StuI	AGGCCT	1 cut(s)	1989
StyD4I	CCNGG	5 cut(s)	219, 293, 1249, 2069, 2549
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	5 cut(s)	195, 242, 1635, 1758, 1798
TaiI	ACGT	5 cut(s)	1180, 1936, 1948, 2110, 2208
TaqI	TCGA	7 cut(s)	17, 40, 341, 379, 459, 1022, 1737
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	3 cut(s)	189, 659, 2546
TfiI	GAWTC	7 cut(s)	140, 338, 456, 886, 1019, 1429, 1465
TscAI	CASTG	2 cut(s)	1761, 1905
TseFI	GTSAC	3 cut(s)	512, 1360, 2244
Tsp45I	GTSAC	3 cut(s)	512, 1360, 2244
TspDTI	ATGAA	7 cut(s)	743, 810, 824, 1353, 2048, 2513, 2541
TspGWI	ACGGA	4 cut(s)	580, 1199, 2155, 2515
TspRI	CASTG	2 cut(s)	1761, 1905
Van91I	CCANNNNNTGG	1 cut(s)	1015
VneI	GTGCAC	1 cut(s)	1179
VpaK11BI	GGWCC	4 cut(s)	133, 249, 291, 1216
VspI	ATTAAT	2 cut(s)	1665, 2328
XapI	RAATTY	3 cut(s)	1502, 1589, 1672
XceI	RCATGY	1 cut(s)	1070
XmiI	GTMKAC	1 cut(s)	2124
XmnI	GAANNNNTTC	2 cut(s)	455, 862
XspI	CTAG	3 cut(s)	420, 846, 1005
Zsp2I	ATGCAT	2 cut(s)	1423, 2534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.