Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Reverse (-)

54700341 .. 54705753

Gene Structure 5413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG321100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGGAATCAAGGGTTGTGCCTGAGACCTCTTTCCCCCCTAGTCATCCCCATCCTACCAAGGTATATTCGATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCTTCAACTGCTGGAAGAAGTGGAAATCTGCCTCCTGGTGAGTTAGATAAAATTAAGAATCTTCTGGCGAAACGTAAGGAATTGGCTGACAAGCTGAACAAAACGAAGTTAGACAAAGCAGCCAAAGCTATTTCAGATGCTAGCGCAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCTGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTACAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTAAAACTTGCACAGGAGCGGGCTGCCAGGATGGGCTTTCGCCATGACCCAGAATTTGCTCCTGTTATAAACTTGTTCCCAGGACAGGTGGCAACAGATGTTGTTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTAGTCAATGTGACTAAACCAAACAACCTCAGCACTTTAAAGGTCAACATTAACAAACAGAAGAAAGACGCATTCCAAATTCTTAAACCTGAAGTCGATATGGATCCTGAATCAAATCCTTTTTTTGACCCGAAGATGGGCATTAATATGACGAAGATTATGAGGCCAAAGAGGATGAACTTCCAGTTTGTAGAGGAAGGGAAATGGTCAAGAGATGCTGAACATATGAAGTTGAAGAGTAAATTTGGGGAATTACAAGCAAAAGAGCATAGGGCGAAGCAGGCCCAGTTGGCAAAGGCAAAGGCAGCACCTGATACAAATCCAAATTTGATAGAGGTAGCAGAAAGAGTCATCACCAAAGAAAAACCGAAGGATCCAATTCCTGAAGTTGAGTGGTGGGATGTGTCCTTTTTACAATCTGGTACTTATGGCGAGCTTGTTGATGGTAGAATACCTGAAGACAGATTAAAGTTGGACAAAATCACCATCTATGTTGAACATCCTCAGCCCATTGAGCCCCCTGTGGAGCCAGCTCCTCCACCACCTCAACCATTAAAGTTGACCAAGAAAGAGCAGAAAAAACTACGCACACAGCGTCGTCTTGCTAGAGAGAAAGATAAGCAGGAGATGATTAGACAGGGTCTGATTGAACCTCCCAAGTCAAAAGTTAAAATGAGTAATTTGATGAAAGTTCTTGGATCTGAAGCAACCCAAGATCCAACCAGACTGGAAAAGGAGATCCGGAGTGCAGCTGCTGAACGTGAACAAGCTCATATAGACAGGAATATTGCTCGCAAGCTCACTCCTGCTGAGCGCCGTGAGAAGAAAGAAAGGAAGCTTTTTGATGATCCAAATAATGTGGATACCATAGTCTCAGTTTATAAAATCAATGATCTATCGCATCCAAAGGCCCGCTTTAAGATTGATGTTAATGCCAGAGAGAATCGGCTGACTGGATGTGCTGTGATCTCAGATGGTATGAATGTTGTGGCTGTTGAAGGTGGAAGCAAATCTATCAAAAGGTATGCAAAGGTCATGCTTCGGCGCATAAACTGGGCTGAGGCTGTGAAAGAGGAGGAAGAAGATGAAGAAGAAAATGATGATAAGCCTCCTAACAAGTGTGTCTTGGTGTGGCAAGGAAGTGTTGCCAGGCCTAGTTTCAATAGATTTTTGGTTCATGAATGCATGACTGAAGCTGCTGGTCGAAAGTTCTTTGCTGATGCTGGCGTTGCTCATTACTGGGATCTTGCAGTCAACTTTGCAGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

625

Amino Acids

69.95

Weight (kDa)

9.16

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP3	PF08572	240 - 469	1.1e-64	pre-mRNA processing factor 3 domain
Prp3_C	PF06544	493 - 618	1.9e-42	Small nuclear ribonucleoprotein Prp3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	491, 1485
AccBSI	CCGCTC	1 cut(s)	442
AccIII	TCCGGA	1 cut(s)	1344
AciI	CCGC	2 cut(s)	442, 1516
AclWI	GGATC	9 cut(s)	701, 714, 971, 984, 1309, 1313, 1336, 1445, 1854
AcsI	RAATTY	4 cut(s)	476, 681, 845, 928
AcuI	CTGAAG	5 cut(s)	714, 1008, 1080, 1326, 1815
AfaI	GTAC	4 cut(s)	139, 340, 382, 1027
AfiI	CCNNNNNNNGG	5 cut(s)	508, 579, 580, 739, 740
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	7 cut(s)	156, 310, 838, 1100, 1253, 1601, 1765
AjnI	CCWGG	4 cut(s)	184, 449, 502, 1751
Alw26I	GTCTC	2 cut(s)	17, 1480
AlwI	GGATC	9 cut(s)	701, 714, 971, 984, 1309, 1313, 1336, 1445, 1854
AlwNI	CAGNNNCTG	3 cut(s)	914, 1246, 1358
Aor13HI	TCCGGA	1 cut(s)	1344
AoxI	GGCC	5 cut(s)	549, 767, 885, 1512, 1754
ApeKI	GCWGC	6 cut(s)	269, 446, 908, 1352, 1355, 1799
ApoI	RAATTY	4 cut(s)	476, 681, 845, 928
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AseI	ATTAAT	1 cut(s)	747
AsiGI	ACCGGT	1 cut(s)	395
AspLEI	GCGC	3 cut(s)	296, 1419, 1650
AspS9I	GGNCC	3 cut(s)	550, 886, 1513
AsuHPI	GGTGA	4 cut(s)	200, 419, 949, 1078
AsuNHI	GCTAGC	1 cut(s)	290
BaeI	ACNNNNGTAYC	2 cut(s)	1458, 1491
BamHI	GGATCC	2 cut(s)	706, 976
BanII	GRGCYC	1 cut(s)	1122
BbsI	GAAGAC	1 cut(s)	1068
BbvCI	CCTCAGC	3 cut(s)	632, 1107, 1662
BbvI	GCAGC	6 cut(s)	281, 433, 920, 1342, 1364, 1786
BceAI	ACGGC	1 cut(s)	1404
BciT130I	CCWGG	4 cut(s)	186, 451, 504, 1753
BciVI	GTATCC	1 cut(s)	1459
BcoDI	GTCTC	2 cut(s)	17, 1480
BfaI	CTAG	6 cut(s)	39, 135, 291, 1209, 1758, 1876
BfoI	RGCGCY	1 cut(s)	1420
BfuI	GTATCC	1 cut(s)	1459
BglI	GCCNNNNNGGC	1 cut(s)	893
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	6 cut(s)	270, 447, 909, 1353, 1356, 1800
BlpI	GCTNAGC	1 cut(s)	1413
BlsI	GCNGC	6 cut(s)	271, 448, 910, 1354, 1357, 1801
Bme1390I	CCNGG	4 cut(s)	186, 451, 504, 1753
BmgT120I	GGNCC	3 cut(s)	550, 886, 1513
BmiI	GGNNCC	4 cut(s)	552, 708, 978, 1131
BmrFI	CCNGG	4 cut(s)	186, 451, 504, 1753
BmrI	ACTGGG	3 cut(s)	883, 1666, 1852
BmsI	GCATC	7 cut(s)	277, 309, 361, 559, 808, 1513, 1813
BmtI	GCTAGC	1 cut(s)	294
BmuI	ACTGGG	3 cut(s)	883, 1666, 1852
BpiI	GAAGAC	1 cut(s)	1068
Bpu10I	CCTNAGC	3 cut(s)	632, 1107, 1662
Bpu1102I	GCTNAGC	1 cut(s)	1413
BsaBI	GATNNNNATC	2 cut(s)	705, 921
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	57, 502, 546, 574
BsaWI	WCCGGW	2 cut(s)	395, 1344
Bsc4I	CCNNNNNNNGG	5 cut(s)	508, 579, 580, 739, 740
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	7 cut(s)	409, 787, 889, 1335, 1561, 1661, 1847
Bse8I	GATNNNNATC	2 cut(s)	705, 921
BseAI	TCCGGA	1 cut(s)	1344
BseBI	CCWGG	4 cut(s)	186, 451, 504, 1753
BseDI	CCNNGG	4 cut(s)	57, 502, 546, 574
BseJI	GATNNNNATC	2 cut(s)	705, 921
BseLI	CCNNNNNNNGG	5 cut(s)	508, 579, 580, 739, 740
BseMII	CTCAG	8 cut(s)	12, 548, 646, 1121, 1404, 1491, 1587, 1653
BseNI	ACTGG	7 cut(s)	409, 787, 889, 1335, 1561, 1661, 1847
BseRI	GAGGAG	2 cut(s)	1128, 1691
BseXI	GCAGC	6 cut(s)	281, 433, 920, 1342, 1364, 1786
BsgI	GTGCAG	1 cut(s)	1371
BshFI	GGCC	5 cut(s)	551, 769, 887, 1514, 1756
BshTI	ACCGGT	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	396, 1345
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	5 cut(s)	508, 579, 580, 739, 740
BsmAI	GTCTC	2 cut(s)	17, 1480
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	2 cut(s)	674, 1790
BsnI	GGCC	5 cut(s)	551, 769, 887, 1514, 1756
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	1122
Bsp13I	TCCGGA	1 cut(s)	1344
Bsp1720I	GCTNAGC	1 cut(s)	1413
BspACI	CCGC	2 cut(s)	442, 1516
BspANI	GGCC	5 cut(s)	551, 769, 887, 1514, 1756
BspCNI	CTCAG	8 cut(s)	13, 547, 645, 1120, 1405, 1490, 1586, 1654
BspEI	TCCGGA	1 cut(s)	1344
BspHI	TCATGA	2 cut(s)	115, 1780
BspLI	GGNNCC	4 cut(s)	552, 708, 978, 1131
BspOI	GCTAGC	1 cut(s)	294
BspPI	GGATC	9 cut(s)	701, 714, 971, 984, 1309, 1313, 1336, 1445, 1854
BspTNI	GGTCTC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	7 cut(s)	409, 787, 889, 1335, 1561, 1661, 1847
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	4 cut(s)	57, 502, 546, 574
BssT1I	CCWWGG	3 cut(s)	57, 546, 574
Bst2UI	CCWGG	4 cut(s)	186, 451, 504, 1753
Bst6I	CTCTTC	1 cut(s)	833
BstC8I	GCNNGC	9 cut(s)	292, 444, 885, 1037, 1134, 1396, 1400, 1516, 1828
BstDEI	CTNAG	8 cut(s)	21, 534, 632, 1107, 1413, 1477, 1573, 1662
BstH2I	RGCGCY	1 cut(s)	1420
BstHHI	GCGC	3 cut(s)	296, 1419, 1650
BstMAI	GTCTC	2 cut(s)	17, 1480
BstMWI	GCNNNNNNNGC	6 cut(s)	275, 884, 893, 908, 1117, 1832
BstNI	CCWGG	4 cut(s)	186, 451, 504, 1753
BstSCI	CCNGG	4 cut(s)	184, 449, 502, 1751
BstV1I	GCAGC	6 cut(s)	281, 433, 920, 1342, 1364, 1786
BstV2I	GAAGAC	1 cut(s)	1068
BstX2I	RGATCY	7 cut(s)	110, 706, 976, 1301, 1318, 1341, 1846
BstYI	RGATCY	7 cut(s)	110, 706, 976, 1301, 1318, 1341, 1846
BsuI	GTATCC	1 cut(s)	1459
BsuRI	GGCC	5 cut(s)	551, 769, 887, 1514, 1756
Cac8I	GCNNGC	9 cut(s)	292, 444, 885, 1037, 1134, 1396, 1400, 1516, 1828
CaiI	CAGNNNCTG	3 cut(s)	914, 1246, 1358
CciI	TCATGA	2 cut(s)	115, 1780
CfoI	GCGC	3 cut(s)	296, 1419, 1650
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	550, 886, 1513
CseI	GACGC	2 cut(s)	680, 1187
Csp6I	GTAC	4 cut(s)	138, 339, 381, 1026
CspAI	ACCGGT	1 cut(s)	395
CspCI	CAANNNNNGTGG	2 cut(s)	1443, 1478
CviAII	CATG	7 cut(s)	116, 125, 467, 596, 1639, 1781, 1789
CviQI	GTAC	4 cut(s)	138, 339, 381, 1026
DdeI	CTNAG	8 cut(s)	21, 534, 632, 1107, 1413, 1477, 1573, 1662
DraI	TTTAAA	1 cut(s)	642
Eam1104I	CTCTTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	833
Eco130I	CCWWGG	3 cut(s)	57, 546, 574
Eco147I	AGGCCT	1 cut(s)	1756
Eco24I	GRGCYC	1 cut(s)	1122
Eco31I	GGTCTC	1 cut(s)	17
Eco57I	CTGAAG	5 cut(s)	714, 1008, 1080, 1326, 1815
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRII	CCWGG	4 cut(s)	184, 449, 502, 1751
EcoT14I	CCWWGG	3 cut(s)	57, 546, 574
EcoT22I	ATGCAT	1 cut(s)	1790
EcoT38I	GRGCYC	1 cut(s)	1122
ErhI	CCWWGG	3 cut(s)	57, 546, 574
FaeI	CATG	7 cut(s)	119, 128, 470, 599, 1642, 1784, 1792
FalI	AAGNNNNNCTT	4 cut(s)	1502, 1534, 1712, 1744
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	7 cut(s)	115, 124, 466, 595, 1638, 1780, 1788
FauI	CCCGC	2 cut(s)	435, 1523
FauNDI	CATATG	1 cut(s)	828
Fnu4HI	GCNGC	6 cut(s)	270, 447, 909, 1353, 1356, 1800
FriOI	GRGCYC	1 cut(s)	1122
Fsp4HI	GCNGC	6 cut(s)	270, 447, 909, 1353, 1356, 1800
FspBI	CTAG	6 cut(s)	39, 135, 291, 1209, 1758, 1876
GlaI	GCGC	3 cut(s)	295, 1418, 1649
GluI	GCNGC	6 cut(s)	270, 447, 909, 1353, 1356, 1800
HaeII	RGCGCY	1 cut(s)	1420
HaeIII	GGCC	5 cut(s)	551, 769, 887, 1514, 1756
HapII	CCGG	2 cut(s)	396, 1345
HgaI	GACGC	2 cut(s)	680, 1187
HhaI	GCGC	3 cut(s)	296, 1419, 1650
Hin1II	CATG	7 cut(s)	119, 128, 470, 599, 1642, 1784, 1792
Hin6I	GCGC	3 cut(s)	294, 1417, 1648
HinP1I	GCGC	3 cut(s)	294, 1417, 1648
HincII	GTYRAC	3 cut(s)	649, 1164, 1858
HindII	GTYRAC	3 cut(s)	649, 1164, 1858
HindIII	AAGCTT	1 cut(s)	1439
HinfI	GANTC	5 cut(s)	5, 208, 713, 951, 1546
HpaII	CCGG	2 cut(s)	396, 1345
HphI	GGTGA	4 cut(s)	200, 419, 949, 1078
Hpy166II	GTNNAC	4 cut(s)	649, 1164, 1367, 1858
Hpy188I	TCNGA	6 cut(s)	286, 402, 537, 1248, 1306, 1576
Hpy188III	TCNNGA	6 cut(s)	116, 710, 813, 986, 1345, 1781
Hpy8I	GTNNAC	4 cut(s)	649, 1164, 1367, 1858
Hpy99I	CGWCG	1 cut(s)	1203
HpyAV	CCTTC	5 cut(s)	304, 573, 794, 967, 1595
HpyCH4IV	ACGT	2 cut(s)	223, 1363
HpyCH4V	TGCA	9 cut(s)	322, 335, 352, 434, 1352, 1631, 1788, 1853, 1865
HpyF10VI	GCNNNNNNNGC	6 cut(s)	275, 884, 893, 908, 1117, 1832
HpyF3I	CTNAG	8 cut(s)	21, 534, 632, 1107, 1413, 1477, 1573, 1662
HpySE526I	ACGT	2 cut(s)	223, 1363
Hsp92II	CATG	7 cut(s)	119, 128, 470, 599, 1642, 1784, 1792
HspAI	GCGC	3 cut(s)	294, 1417, 1648
Kpn2I	TCCGGA	1 cut(s)	1344
LmnI	GCTCC	4 cut(s)	439, 487, 1129, 1141
Lsp1109I	GCAGC	6 cut(s)	281, 433, 920, 1342, 1364, 1786
LweI	GCATC	7 cut(s)	277, 309, 361, 559, 808, 1513, 1813
MaeI	CTAG	6 cut(s)	39, 135, 291, 1209, 1758, 1876
MaeII	ACGT	2 cut(s)	223, 1363
MaeIII	GTNAC	1 cut(s)	613
MbiI	CCGCTC	1 cut(s)	442
MflI	RGATCY	7 cut(s)	110, 706, 976, 1301, 1318, 1341, 1846
MhlI	GDGCHC	1 cut(s)	1122
MlyI	GAGTC	1 cut(s)	960
MmeI	TCCRAC	2 cut(s)	1056, 1346
Mph1103I	ATGCAT	1 cut(s)	1790
MroI	TCCGGA	1 cut(s)	1344
MslI	CAYNNNNRTG	2 cut(s)	600, 749
MspA1I	CMGCKG	1 cut(s)	1355
MspI	CCGG	2 cut(s)	396, 1345
MspR9I	CCNGG	4 cut(s)	186, 451, 504, 1753
Mva1269I	GAATGC	2 cut(s)	674, 1790
MvaI	CCWGG	4 cut(s)	186, 451, 504, 1753
MwoI	GCNNNNNNNGC	6 cut(s)	275, 884, 893, 908, 1117, 1832
NdeI	CATATG	1 cut(s)	828
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	7 cut(s)	119, 128, 470, 599, 1642, 1784, 1792
NlaIV	GGNNCC	4 cut(s)	552, 708, 978, 1131
NmuCI	GTSAC	1 cut(s)	613
NsiI	ATGCAT	1 cut(s)	1790
PagI	TCATGA	2 cut(s)	115, 1780
PceI	AGGCCT	1 cut(s)	1756
PcsI	WCGNNNNNNNCGW	1 cut(s)	1195
PctI	GAATGC	2 cut(s)	674, 1790
PfeI	GAWTC	4 cut(s)	5, 208, 713, 1546
PflFI	GACNNNGTC	1 cut(s)	1242
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	6 cut(s)	271, 448, 910, 1354, 1357, 1801
PleI	GAGTC	1 cut(s)	959
PpsI	GAGTC	1 cut(s)	959
PshBI	ATTAAT	1 cut(s)	747
PsiI	TTATAA	2 cut(s)	491, 1485
Psp6I	CCWGG	4 cut(s)	184, 449, 502, 1751
PspGI	CCWGG	4 cut(s)	184, 449, 502, 1751
PspN4I	GGNNCC	4 cut(s)	552, 708, 978, 1131
PspPI	GGNCC	3 cut(s)	550, 886, 1513
PstNI	CAGNNNCTG	3 cut(s)	914, 1246, 1358
PsuI	RGATCY	7 cut(s)	110, 706, 976, 1301, 1318, 1341, 1846
PsyI	GACNNNGTC	1 cut(s)	1242
PvuII	CAGCTG	1 cut(s)	1355
RsaI	GTAC	4 cut(s)	139, 340, 382, 1027
RsaNI	GTAC	4 cut(s)	138, 339, 381, 1026
RseI	CAYNNNNRTG	2 cut(s)	600, 749
SatI	GCNGC	6 cut(s)	270, 447, 909, 1353, 1356, 1800
Sau96I	GGNCC	3 cut(s)	550, 886, 1513
SchI	GAGTC	1 cut(s)	960
ScrFI	CCNGG	4 cut(s)	186, 451, 504, 1753
SduI	GDGCHC	1 cut(s)	1122
SfaNI	GCATC	7 cut(s)	277, 309, 361, 559, 808, 1513, 1813
SmiMI	CAYNNNNRTG	2 cut(s)	600, 749
SseBI	AGGCCT	1 cut(s)	1756
SsiI	CCGC	2 cut(s)	442, 1516
SspI	AATATT	1 cut(s)	1390
SspMI	CTAG	6 cut(s)	39, 135, 291, 1209, 1758, 1876
StuI	AGGCCT	1 cut(s)	1756
StyD4I	CCNGG	4 cut(s)	184, 449, 502, 1751
StyI	CCWWGG	3 cut(s)	57, 546, 574
TaiI	ACGT	2 cut(s)	226, 1366
TaqI	TCGA	4 cut(s)	68, 562, 699, 1807
TatI	WGTACW	2 cut(s)	137, 338
TfiI	GAWTC	4 cut(s)	5, 208, 713, 1546
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	6 cut(s)	269, 446, 908, 1352, 1355, 1799
Tsp45I	GTSAC	1 cut(s)	613
Tth111I	GACNNNGTC	1 cut(s)	1242
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	4 cut(s)	476, 681, 845, 928
XspI	CTAG	6 cut(s)	39, 135, 291, 1209, 1758, 1876
Zsp2I	ATGCAT	1 cut(s)	1790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.