Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Forward (+)

11964404 .. 11969408

Gene Structure 5005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2460 bp

ATGGAGAAAGAGAAATCGAGCAAGCGCTCCCGAGACGAACGCGACCGACGAGACCGAGACCGAGACCGCGACAGGGATCATCACAAGCATCGAAGCAGCCGCGACGCTTCCGATGACCACCACCGCCAACACCGCGCTCGGTCGGACCGCGATTCGAAGCCCGAGCGCTCCCACGACCACAGATCTCGCCGTGACAGGTCGCCGGAGCCGCGGGACGACAGGGAAGGGAGTAGAGAGAGGTCCAGGCATCGCGAAGTGAAGCGGGAGAGGTCGGAGGAGGGAGAGGATATGGTGGAGAGGAGGCATAAGAGGAAAGAGAGGGAGAGGAGTGAGGGTAGAGATGGCGGTGTGGATGAGTCTGAAGATTCTAAGAGAGCTAGGGGTCCGGATGAGAGGAAAGAGAGGAAGCGATTTGATGACCGCCGAGTAAAGGAAGAAGAGGATGCTGGAGAATTGGAAAGGAGCACTGAAGGGAATGTGATTCACACTGAGGTTAAGGTTAAGAAAGAAGAATTGGAGGATGATGAGGGCTTCACTACCACCCAAAATGGGGGTGCTCCGGTGGGTAATGTTACATCTTTGGTGGATACATTTAGGCTAGCATTTGTCATAAGAGGTGCCAGTCTGGATTCTACTATGGAATCAAGGGTTGTGCCTGAGACCTCTCCCCCCTATACAGATGGGACATCTTCAACTGCTGGAAGAAGTGGAAATCTGCCTCCTGGTGAGTTAGATAAAATTAAGAATCTTCTGGCGAAACGTAAGGAATTGGCTGACAAGCTGAACAAAACGAAGTTAGACAAAGCAGCCAAAGCTATTTCAGATGCTAGCGCAAACTTGGGATTGAAGGATGGGATGCAGCCTCCATCTGCAAGTACAGGAATTTTGCATCCCCCTGTGCCATCAACAATTAGTGGTACAAGTGGAATGACCGGTCTGACTGGTGGCAACAGATGTTGTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTAGTCAACGTGACTAAACCAAACAACCTCAGCACTTTAAAGGTCAACATTAACAAACAGAAGAAAGATGCATTCCAAATTCTTAAACCTGAAGTCGATATGGATCCTGAATCAAATCCTTTTTTTGACCCGAAGATGGGCATTAATATGACGAAGATTATGAGGCCAAAGAGGATGAACTTCCAGTTTGTAGAGGAAGGGAAGTGGTCAAGAGATGCTGAACATATGAAGTTGAAGAGTAAATTTGGGGAATTACAAGCAAAAGAGCATAGGGCGAAGCAGGCCCAGTTGGCAAAGGCCAAGGCAGCACCTGATACAAATCCAAATTTGATAGAGGTAGCAGAAAGAGTCATCACCAAAGAAAAACTGAAGGATCCAATTCCTGAAGTTGAGTGGTGGGATGTGTCCTTTTTACAATCTGGTACTTATGGCGAGCTTGTTGATGGTAGAATACCTGAAGATAGATTAAAGTTGGACAAAATCACCATCTATGTTGAACATCCCCAGCCCATTGAGCCCCCTGTGGAGCCAGCTCCTCCACCACCTCAACCATTAAAGTTGACCAAGAAAGAGCAGAAAAAACTACGCACACAGCGTCGTCTTGCTAGAGAGAAAGATAAGCAGGAGATGATTAGACAGGGTCTGATTGAACCCCCCAAGTCAAAAGTTAAAATGAGTAATTTGATGAAAGTTCTTGGCTCCGAAGCAACCCAAGATCCAACCAGACTGGAAAAGGAGATCCGGAGTGCAGCTGCTGAACGTGAACAAGCTCATATAGACAGGAATATTGCCCGCAAGCTCACTCCTGCTGAGCGCCGTGAGAAGAAAGAGAGGAAGCTTTTTGATGATCCAAATAATGTGGATACCATAGTCTCAGTTTATAAAATCAATGATCTATCTCATCCAAAGGCCCGCTTTAAGATTGATGTTAATGCCAGAGAGAATCGGCTGACTGGATGTGCTGTGATCTCAGATGGTATGAATGTTGTGGCTGTTGAAGGTGGAAGCAAATCTATCAAAAGGTATGCAAAGGTCATGCTTCGGCGCATAAACTGGGCTGAGGCTGTGAAAGAGGAGGAAGAAGATAAAGAAGAAAATGATGATAAGCCTCCTAACAAGTGTGTCTTGGTGTGGCAAGGAAGTGTTGCCAGGCCTAGTTTCAATAGATTTTTGGTTCATGAATGCATGACTGAAGCTGCTGGTCGAAAGTTCTTTGCTGATGCTGGCGTTGCTCATTACTGGGATCTTGCAGTCAACTTTACTGATGATGAATATGTTAGAATGCCTGAAATCCAGAATGCAAGTGTTATGGCCCCTCATGCTCGACAAGGAAGAAATGCGAGTTCAGATCTGCCCTACTTAACTGGGCAAGAGATGGAGGCCATGGATGCTGCTGTTCGTTCAAACTATCATCTACACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

819

Amino Acids

93.29

Weight (kDa)

9.08

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP3	PF08572	384 - 613	1.9e-64	pre-mRNA processing factor 3 domain
Prp3_C	PF06544	637 - 762	2.9e-42	Small nuclear ribonucleoprotein Prp3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1917
AccB1I	GGYRCC	1 cut(s)	617
AccII	CGCG	7 cut(s)	42, 69, 102, 135, 150, 211, 252
AccIII	TCCGGA	2 cut(s)	385, 1776
AclWI	GGATC	9 cut(s)	84, 1133, 1146, 1403, 1416, 1745, 1768, 1877, 2286
AcsI	RAATTY	4 cut(s)	882, 1113, 1277, 1360
AcuI	CTGAAG	7 cut(s)	381, 489, 1146, 1424, 1440, 1512, 2247
AfaI	GTAC	3 cut(s)	877, 919, 1459
AfeI	AGCGCT	2 cut(s)	26, 167
AfiI	CCNNNNNNNGG	8 cut(s)	73, 430, 549, 550, 1011, 1012, 1171, 1172
AgeI	ACCGGT	1 cut(s)	932
AgsI	TTSAA	8 cut(s)	693, 847, 1270, 1532, 1685, 2033, 2197, 2439
AjnI	CCWGG	3 cut(s)	242, 721, 2183
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
Alw21I	GWGCWC	2 cut(s)	467, 559
Alw26I	GTCTC	6 cut(s)	27, 45, 51, 57, 653, 1912
AlwI	GGATC	9 cut(s)	84, 1133, 1146, 1403, 1416, 1745, 1768, 1877, 2286
AlwNI	CAGNNNCTG	3 cut(s)	1346, 1678, 1790
Ama87I	CYCGRG	2 cut(s)	30, 161
Aor13HI	TCCGGA	2 cut(s)	385, 1776
Aor51HI	AGCGCT	2 cut(s)	26, 167
AoxI	GGCC	8 cut(s)	981, 1199, 1317, 1332, 1944, 2186, 2346, 2415
ApeKI	GCWGC	8 cut(s)	96, 806, 859, 1340, 1784, 1787, 2231, 2426
ApoI	RAATTY	4 cut(s)	882, 1113, 1277, 1360
AseI	ATTAAT	1 cut(s)	1179
AsiGI	ACCGGT	1 cut(s)	932
AspLEI	GCGC	6 cut(s)	27, 137, 168, 833, 1851, 2082
AspS9I	GGNCC	7 cut(s)	145, 240, 383, 982, 1318, 1945, 2347
AsuHPI	GGTGA	3 cut(s)	737, 1381, 1510
AsuII	TTCGAA	1 cut(s)	155
AsuNHI	GCTAGC	2 cut(s)	598, 827
AvaI	CYCGRG	2 cut(s)	30, 161
AvaII	GGWCC	3 cut(s)	145, 240, 383
BaeI	ACNNNNGTAYC	2 cut(s)	1890, 1923
BamHI	GGATCC	2 cut(s)	1138, 1408
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	1554
Bbv12I	GWGCWC	2 cut(s)	467, 559
BbvCI	CCTCAGC	2 cut(s)	1064, 2094
BbvI	GCAGC	8 cut(s)	108, 818, 871, 1352, 1774, 1796, 2218, 2413
BceAI	ACGGC	2 cut(s)	174, 1836
BciT130I	CCWGG	3 cut(s)	244, 723, 2185
BciVI	GTATCC	2 cut(s)	580, 1891
BcoDI	GTCTC	6 cut(s)	27, 45, 51, 57, 653, 1912
BfaI	CTAG	5 cut(s)	378, 599, 828, 1641, 2190
BfoI	RGCGCY	3 cut(s)	28, 169, 1852
BfuI	GTATCC	2 cut(s)	580, 1891
BglI	GCCNNNNNGGC	1 cut(s)	1325
BglII	AGATCT	2 cut(s)	182, 2383
BlpI	GCTNAGC	1 cut(s)	1845
Bme1390I	CCNGG	3 cut(s)	244, 723, 2185
Bme18I	GGWCC	3 cut(s)	145, 240, 383
BmeT110I	CYCGRG	2 cut(s)	30, 161
BmgT120I	GGNCC	7 cut(s)	145, 240, 383, 982, 1318, 1945, 2347
BmiI	GGNNCC	9 cut(s)	207, 384, 619, 984, 1140, 1410, 1563, 1735, 2349
BmrFI	CCNGG	3 cut(s)	244, 723, 2185
BmrI	ACTGGG	4 cut(s)	1315, 2098, 2284, 2409
BmtI	GCTAGC	2 cut(s)	602, 831
BmuI	ACTGGG	4 cut(s)	1315, 2098, 2284, 2409
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	2 cut(s)	1064, 2094
Bpu1102I	GCTNAGC	1 cut(s)	1845
Bpu14I	TTCGAA	1 cut(s)	155
BsaBI	GATNNNNATC	2 cut(s)	1137, 1353
BsaI	GGTCTC	4 cut(s)	45, 51, 57, 653
BsaJI	CCNNGG	5 cut(s)	209, 978, 1006, 1335, 2418
BsaWI	WCCGGW	4 cut(s)	385, 559, 932, 1776
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	8 cut(s)	73, 430, 549, 550, 1011, 1012, 1171, 1172
Bse118I	RCCGGY	1 cut(s)	932
Bse1I	ACTGG	9 cut(s)	621, 946, 1219, 1321, 1767, 1993, 2093, 2279, 2404
Bse8I	GATNNNNATC	2 cut(s)	1137, 1353
BseAI	TCCGGA	2 cut(s)	385, 1776
BseBI	CCWGG	3 cut(s)	244, 723, 2185
BseDI	CCNNGG	5 cut(s)	209, 978, 1006, 1335, 2418
BseJI	GATNNNNATC	2 cut(s)	1137, 1353
BseLI	CCNNNNNNNGG	8 cut(s)	73, 430, 549, 550, 1011, 1012, 1171, 1172
BseMII	CTCAG	8 cut(s)	480, 648, 980, 1078, 1836, 1923, 2019, 2085
BseNI	ACTGG	9 cut(s)	621, 946, 1219, 1321, 1767, 1993, 2093, 2279, 2404
BseRI	GAGGAG	5 cut(s)	290, 313, 340, 1560, 2123
BseXI	GCAGC	8 cut(s)	108, 818, 871, 1352, 1774, 1796, 2218, 2413
BseYI	CCCAGC	1 cut(s)	1539
BsgI	GTGCAG	1 cut(s)	1803
Bsh1236I	CGCG	7 cut(s)	42, 69, 102, 135, 150, 211, 252
Bsh1285I	CGRYCG	2 cut(s)	46, 143
BshFI	GGCC	8 cut(s)	983, 1201, 1319, 1334, 1946, 2188, 2348, 2417
BshNI	GGYRCC	1 cut(s)	617
BshTI	ACCGGT	1 cut(s)	932
BsiEI	CGRYCG	2 cut(s)	46, 143
BsiHKAI	GWGCWC	2 cut(s)	467, 559
BsiHKCI	CYCGRG	2 cut(s)	30, 161
BsiSI	CCGG	5 cut(s)	203, 386, 560, 933, 1777
BslFI	GGGAC	3 cut(s)	227, 697, 945
BslI	CCNNNNNNNGG	8 cut(s)	73, 430, 549, 550, 1011, 1012, 1171, 1172
BsmAI	GTCTC	6 cut(s)	27, 45, 51, 57, 653, 1912
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	3 cut(s)	227, 697, 945
BsmI	GAATGC	4 cut(s)	1106, 2222, 2322, 2338
BsnI	GGCC	8 cut(s)	983, 1201, 1319, 1334, 1946, 2188, 2348, 2417
Bso31I	GGTCTC	4 cut(s)	45, 51, 57, 653
BsoBI	CYCGRG	2 cut(s)	30, 161
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	467, 559, 1554
Bsp13I	TCCGGA	2 cut(s)	385, 1776
Bsp1720I	GCTNAGC	1 cut(s)	1845
Bsp19I	CCATGG	1 cut(s)	2418
Bsp68I	TCGCGA	1 cut(s)	252
BspANI	GGCC	8 cut(s)	983, 1201, 1319, 1334, 1946, 2188, 2348, 2417
BspCNI	CTCAG	8 cut(s)	481, 649, 979, 1077, 1837, 1922, 2018, 2086
BspEI	TCCGGA	2 cut(s)	385, 1776
BspFNI	CGCG	7 cut(s)	42, 69, 102, 135, 150, 211, 252
BspHI	TCATGA	1 cut(s)	2212
BspLI	GGNNCC	9 cut(s)	207, 384, 619, 984, 1140, 1410, 1563, 1735, 2349
BspOI	GCTAGC	2 cut(s)	602, 831
BspPI	GGATC	9 cut(s)	84, 1133, 1146, 1403, 1416, 1745, 1768, 1877, 2286
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	617
BspTNI	GGTCTC	4 cut(s)	45, 51, 57, 653
BsrFI	RCCGGY	1 cut(s)	932
BsrI	ACTGG	9 cut(s)	621, 946, 1219, 1321, 1767, 1993, 2093, 2279, 2404
BssAI	RCCGGY	1 cut(s)	932
BssECI	CCNNGG	5 cut(s)	209, 978, 1006, 1335, 2418
BssT1I	CCWWGG	4 cut(s)	978, 1006, 1335, 2418
Bst2UI	CCWGG	3 cut(s)	244, 723, 2185
Bst6I	CTCTTC	2 cut(s)	432, 1265
BstBI	TTCGAA	1 cut(s)	155
BstDEI	CTNAG	9 cut(s)	369, 489, 657, 966, 1064, 1845, 1909, 2005, 2094
BstDSI	CCRYGG	2 cut(s)	209, 2418
BstFNI	CGCG	7 cut(s)	42, 69, 102, 135, 150, 211, 252
BstH2I	RGCGCY	3 cut(s)	28, 169, 1852
BstHHI	GCGC	6 cut(s)	27, 137, 168, 833, 1851, 2082
BstMAI	GTCTC	6 cut(s)	27, 45, 51, 57, 653, 1912
BstMCI	CGRYCG	2 cut(s)	46, 143
BstNI	CCWGG	3 cut(s)	244, 723, 2185
BstSCI	CCNGG	3 cut(s)	242, 721, 2183
BstUI	CGCG	7 cut(s)	42, 69, 102, 135, 150, 211, 252
BstV1I	GCAGC	8 cut(s)	108, 818, 871, 1352, 1774, 1796, 2218, 2413
BstX2I	RGATCY	7 cut(s)	182, 1138, 1408, 1750, 1773, 2278, 2383
BstYI	RGATCY	7 cut(s)	182, 1138, 1408, 1750, 1773, 2278, 2383
BsuI	GTATCC	2 cut(s)	580, 1891
BsuRI	GGCC	8 cut(s)	983, 1201, 1319, 1334, 1946, 2188, 2348, 2417
BtgI	CCRYGG	2 cut(s)	209, 2418
BtgZI	GCGATG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	465, 486
BtuMI	TCGCGA	1 cut(s)	252
CaiI	CAGNNNCTG	3 cut(s)	1346, 1678, 1790
CciI	TCATGA	1 cut(s)	2212
CfoI	GCGC	6 cut(s)	27, 137, 168, 833, 1851, 2082
Cfr10I	RCCGGY	1 cut(s)	932
Cfr13I	GGNCC	7 cut(s)	145, 240, 383, 982, 1318, 1945, 2347
Cfr42I	CCGCGG	1 cut(s)	212
CpoI	CGGWCCG	1 cut(s)	145
CseI	GACGC	2 cut(s)	113, 1619
Csp6I	GTAC	3 cut(s)	876, 918, 1458
CspAI	ACCGGT	1 cut(s)	932
CspCI	CAANNNNNGTGG	2 cut(s)	1875, 1910
CspI	CGGWCCG	1 cut(s)	145
CviAII	CATG	6 cut(s)	1028, 2071, 2213, 2221, 2354, 2419
CviQI	GTAC	3 cut(s)	876, 918, 1458
DdeI	CTNAG	9 cut(s)	369, 489, 657, 966, 1064, 1845, 1909, 2005, 2094
DraI	TTTAAA	1 cut(s)	1074
Eam1104I	CTCTTC	2 cut(s)	432, 1265
EarI	CTCTTC	2 cut(s)	432, 1265
Eco130I	CCWWGG	4 cut(s)	978, 1006, 1335, 2418
Eco147I	AGGCCT	1 cut(s)	2188
Eco24I	GRGCYC	1 cut(s)	1554
Eco31I	GGTCTC	4 cut(s)	45, 51, 57, 653
Eco47I	GGWCC	3 cut(s)	145, 240, 383
Eco47III	AGCGCT	2 cut(s)	26, 167
Eco57I	CTGAAG	7 cut(s)	381, 489, 1146, 1424, 1440, 1512, 2247
Eco88I	CYCGRG	2 cut(s)	30, 161
EcoO109I	RGGNCCY	1 cut(s)	982
EcoRII	CCWGG	3 cut(s)	242, 721, 2183
EcoT14I	CCWWGG	4 cut(s)	978, 1006, 1335, 2418
EcoT22I	ATGCAT	2 cut(s)	1108, 2222
EcoT38I	GRGCYC	1 cut(s)	1554
ErhI	CCWWGG	4 cut(s)	978, 1006, 1335, 2418
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	6 cut(s)	1031, 2074, 2216, 2224, 2357, 2422
FalI	AAGNNNNNCTT	4 cut(s)	1934, 1966, 2144, 2176
FaqI	GGGAC	3 cut(s)	227, 697, 945
FatI	CATG	6 cut(s)	1027, 2070, 2212, 2220, 2353, 2418
FauI	CCCGC	4 cut(s)	204, 255, 1835, 1955
FauNDI	CATATG	1 cut(s)	1260
FriOI	GRGCYC	1 cut(s)	1554
FspBI	CTAG	5 cut(s)	378, 599, 828, 1641, 2190
GlaI	GCGC	6 cut(s)	26, 136, 167, 832, 1850, 2081
GsaI	CCCAGC	1 cut(s)	1543
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	3 cut(s)	28, 169, 1852
HaeIII	GGCC	8 cut(s)	983, 1201, 1319, 1334, 1946, 2188, 2348, 2417
HapII	CCGG	5 cut(s)	203, 386, 560, 933, 1777
HgaI	GACGC	2 cut(s)	113, 1619
HhaI	GCGC	6 cut(s)	27, 137, 168, 833, 1851, 2082
Hin1II	CATG	6 cut(s)	1031, 2074, 2216, 2224, 2357, 2422
Hin6I	GCGC	6 cut(s)	25, 135, 166, 831, 1849, 2080
HinP1I	GCGC	6 cut(s)	25, 135, 166, 831, 1849, 2080
HincII	GTYRAC	4 cut(s)	1042, 1081, 1596, 2290
HindII	GTYRAC	4 cut(s)	1042, 1081, 1596, 2290
HindIII	AAGCTT	1 cut(s)	1871
HpaII	CCGG	5 cut(s)	203, 386, 560, 933, 1777
HphI	GGTGA	3 cut(s)	737, 1381, 1510
Hpy166II	GTNNAC	5 cut(s)	1042, 1081, 1596, 1799, 2290
Hpy8I	GTNNAC	5 cut(s)	1042, 1081, 1596, 1799, 2290
Hpy99I	CGWCG	3 cut(s)	51, 107, 1635
HpyAV	CCTTC	7 cut(s)	218, 464, 841, 1005, 1226, 1399, 2027
HpyCH4IV	ACGT	3 cut(s)	760, 1044, 1795
HpyCH4V	TGCA	9 cut(s)	859, 872, 889, 1106, 1784, 2063, 2220, 2285, 2336
HpyF3I	CTNAG	9 cut(s)	369, 489, 657, 966, 1064, 1845, 1909, 2005, 2094
HpySE526I	ACGT	3 cut(s)	760, 1044, 1795
Hsp92II	CATG	6 cut(s)	1031, 2074, 2216, 2224, 2357, 2422
HspAI	GCGC	6 cut(s)	25, 135, 166, 831, 1849, 2080
Kpn2I	TCCGGA	2 cut(s)	385, 1776
KspI	CCGCGG	1 cut(s)	212
LmnI	GCTCC	8 cut(s)	32, 173, 205, 462, 562, 1561, 1573, 1739
Lsp1109I	GCAGC	8 cut(s)	108, 818, 871, 1352, 1774, 1796, 2218, 2413
MaeI	CTAG	5 cut(s)	378, 599, 828, 1641, 2190
MaeII	ACGT	3 cut(s)	760, 1044, 1795
MaeIII	GTNAC	3 cut(s)	191, 571, 1045
MflI	RGATCY	7 cut(s)	182, 1138, 1408, 1750, 1773, 2278, 2383
MhlI	GDGCHC	3 cut(s)	467, 559, 1554
MlyI	GAGTC	2 cut(s)	365, 1392
MmeI	TCCRAC	4 cut(s)	123, 252, 1488, 1778
Mph1103I	ATGCAT	2 cut(s)	1108, 2222
MroI	TCCGGA	2 cut(s)	385, 1776
MslI	CAYNNNNRTG	2 cut(s)	1032, 1181
MspA1I	CMGCKG	2 cut(s)	211, 1787
MspI	CCGG	5 cut(s)	203, 386, 560, 933, 1777
MspR9I	CCNGG	3 cut(s)	244, 723, 2185
Mva1269I	GAATGC	4 cut(s)	1106, 2222, 2322, 2338
MvaI	CCWGG	3 cut(s)	244, 723, 2185
MvnI	CGCG	7 cut(s)	42, 69, 102, 135, 150, 211, 252
NcoI	CCATGG	1 cut(s)	2418
NdeI	CATATG	1 cut(s)	1260
NheI	GCTAGC	2 cut(s)	598, 827
NlaIII	CATG	6 cut(s)	1031, 2074, 2216, 2224, 2357, 2422
NlaIV	GGNNCC	9 cut(s)	207, 384, 619, 984, 1140, 1410, 1563, 1735, 2349
NmeAIII	GCCGAG	1 cut(s)	449
NmuCI	GTSAC	2 cut(s)	191, 1045
NruI	TCGCGA	1 cut(s)	252
NsiI	ATGCAT	2 cut(s)	1108, 2222
NspV	TTCGAA	1 cut(s)	155
PagI	TCATGA	1 cut(s)	2212
PceI	AGGCCT	1 cut(s)	2188
PcsI	WCGNNNNNNNCGW	2 cut(s)	46, 1627
PctI	GAATGC	4 cut(s)	1106, 2222, 2322, 2338
PfeI	GAWTC	8 cut(s)	152, 365, 481, 629, 641, 745, 1145, 1978
PflFI	GACNNNGTC	1 cut(s)	1674
PinAI	ACCGGT	1 cut(s)	932
PleI	GAGTC	2 cut(s)	364, 1391
PpsI	GAGTC	2 cut(s)	364, 1391
PshBI	ATTAAT	1 cut(s)	1179
PsiI	TTATAA	1 cut(s)	1917
Psp6I	CCWGG	3 cut(s)	242, 721, 2183
PspFI	CCCAGC	1 cut(s)	1539
PspGI	CCWGG	3 cut(s)	242, 721, 2183
PspN4I	GGNNCC	9 cut(s)	207, 384, 619, 984, 1140, 1410, 1563, 1735, 2349
PspPI	GGNCC	7 cut(s)	145, 240, 383, 982, 1318, 1945, 2347
PstNI	CAGNNNCTG	3 cut(s)	1346, 1678, 1790
PsuI	RGATCY	7 cut(s)	182, 1138, 1408, 1750, 1773, 2278, 2383
PsyI	GACNNNGTC	1 cut(s)	1674
PvuII	CAGCTG	1 cut(s)	1787
RruI	TCGCGA	1 cut(s)	252
RsaI	GTAC	3 cut(s)	877, 919, 1459
RsaNI	GTAC	3 cut(s)	876, 918, 1458
RseI	CAYNNNNRTG	2 cut(s)	1032, 1181
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SacII	CCGCGG	1 cut(s)	212
Sau96I	GGNCC	7 cut(s)	145, 240, 383, 982, 1318, 1945, 2347
SchI	GAGTC	2 cut(s)	365, 1392
ScrFI	CCNGG	3 cut(s)	244, 723, 2185
SduI	GDGCHC	3 cut(s)	467, 559, 1554
Sfr303I	CCGCGG	1 cut(s)	212
SfuI	TTCGAA	1 cut(s)	155
SgrBI	CCGCGG	1 cut(s)	212
SinI	GGWCC	3 cut(s)	145, 240, 383
SmiMI	CAYNNNNRTG	2 cut(s)	1032, 1181
SseBI	AGGCCT	1 cut(s)	2188
SspI	AATATT	1 cut(s)	1822
SspMI	CTAG	5 cut(s)	378, 599, 828, 1641, 2190
StuI	AGGCCT	1 cut(s)	2188
StyD4I	CCNGG	3 cut(s)	242, 721, 2183
StyI	CCWWGG	4 cut(s)	978, 1006, 1335, 2418
TaiI	ACGT	3 cut(s)	763, 1047, 1798
TaqI	TCGA	7 cut(s)	17, 91, 155, 994, 1131, 2239, 2359
TaqII	GACCGA	4 cut(s)	60, 69, 75, 129
TatI	WGTACW	1 cut(s)	875
TauI	GCSGC	2 cut(s)	102, 211
TfiI	GAWTC	8 cut(s)	152, 365, 481, 629, 641, 745, 1145, 1978
TscAI	CASTG	2 cut(s)	472, 493
TseFI	GTSAC	2 cut(s)	191, 1045
TseI	GCWGC	8 cut(s)	96, 806, 859, 1340, 1784, 1787, 2231, 2426
Tsp45I	GTSAC	2 cut(s)	191, 1045
TspDTI	ATGAA	8 cut(s)	1038, 1226, 1277, 1736, 2030, 2201, 2229, 2319
TspRI	CASTG	2 cut(s)	472, 493
Tth111I	GACNNNGTC	1 cut(s)	1674
VpaK11BI	GGWCC	3 cut(s)	145, 240, 383
VspI	ATTAAT	1 cut(s)	1179
XapI	RAATTY	4 cut(s)	882, 1113, 1277, 1360
XspI	CTAG	5 cut(s)	378, 599, 828, 1641, 2190
Zsp2I	ATGCAT	2 cut(s)	1108, 2222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.