Rw5G032310

187-kDa microtubule-associated protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
54529791 .. 54537736
7946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032310.1

Sequence Viewer

Length: 1299 bp
ATGCCTACACATCAACAGAACTCGGATCCTGAAGGACTGGAGCTTATCATTCCTGATTGCTGTGAGGATGAAGAATTGGTTCCAGAAAAAACATACTTTGGTGGAGAGGAGGGTGTTGGAGAATATATTTGGTACAGAACGAAGAATAAGCTTCATGGATCTGCATTGCTGGATATATCTAATTTGAATGAAGATGTTGGTATATGCAGTAAAACACTAACATATAAACCAGCACTTGTAGATGTTGGGGCTTATTTGGCCCTATATTGGGTGCCCACCCGTAAAGATGGTAAATGTGGGAAGGCACTAGTTGCAATTTGCAACTCTCCGGTTGCACCAGCTCTTCCTGTGGTTTCTAATGTTCGTGTGAAGAAGGTGTCTCTGTCTGTTTATTCTGGGGAAGGAGAATATACACCAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGAGCTTCCGAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTTCCGTTGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATTTAGACAAAGCAGCCAATGCTAGTTCAAATGCTAGCGCAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCTGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTGCAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTAAAACTTGCACAGGAGCGGGCTGCCAGGATGGGCTTTCGCCATGACCCAGAATTTGCTCCTGTTATAAACTTGTTCCCAGGACAGGTGGCAACAGATGTTGTTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTAGTCAATGTGACTAAACCAAACAACCTCAGCACTTTAAAGTCAAATCATGATAAACTGAATCAAGAAACACATAAAAGGGTAGGTGAGAAATATCAATCATACCAGTACGGGCTGTTCGACCCGATCTTCAGTTTGGTTATGGTGCACCACAAACAAAACGAGGCCGGCAATGGAGAAGAGTCCAAACAGAGCCCAAATCCAATAAGAAAACCTCCTGCTTCGTACTGGGCGCCGATACTCGGCCGCCCGCCGCCGCATCTTGGACTAATTTCACCACCAAATCACAAATCCGCACCAGCCCATGACCCAGATTCGATCAAAAACCCATCAAGACTCGACCTTTAA

Protein Analysis

432

Amino Acids

47.02

Weight (kDa)

5.93

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IG_AIR9 PF23197 16 - 104 9.6e-16 AIR9 A9 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 839
AccB1I GGYRCC 2 cut(s) 271, 1183
AccBSI CCGCTC 1 cut(s) 790
AciI CCGC 6 cut(s) 790, 1198, 1202, 1205, 1208, 1245
AclWI GGATC 4 cut(s) 20, 33, 166, 550
AcoI YGGCCR 1 cut(s) 1195
AcsI RAATTY 1 cut(s) 824
AcuI CTGAAG 2 cut(s) 51, 1066
AcyI GRCGYC 1 cut(s) 1184
AfaI GTAC 5 cut(s) 134, 596, 688, 1061, 1178
AfiI CCNNNNNNNGG 7 cut(s) 267, 268, 856, 927, 928, 1193, 1214
AgeI ACCGGT 1 cut(s) 743
AgsI TTSAA 4 cut(s) 187, 551, 633, 658
AhlI ACTAGT 1 cut(s) 307
AjnI CCWGG 2 cut(s) 797, 850
AluBI AGCT 6 cut(s) 43, 151, 341, 484, 580, 770
AluI AGCT 6 cut(s) 43, 151, 341, 484, 580, 770
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 2 cut(s) 384, 484
Alw44I GTGCAC 1 cut(s) 1097
AlwI GGATC 4 cut(s) 20, 33, 166, 550
AoxI GGCC 4 cut(s) 258, 897, 1116, 1195
ApaLI GTGCAC 1 cut(s) 1097
ApeKI GCWGC 2 cut(s) 617, 794
ApoI RAATTY 1 cut(s) 824
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AsiGI ACCGGT 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 2 cut(s) 644, 1186
AspS9I GGNCC 2 cut(s) 259, 898
AsuHPI GGTGA 5 cut(s) 452, 542, 767, 1049, 1218
AsuNHI GCTAGC 1 cut(s) 638
BaeGI GKGCMC 2 cut(s) 276, 1101
BamHI GGATCC 1 cut(s) 25
BanI GGYRCC 2 cut(s) 271, 1183
BanII GRGCYC 1 cut(s) 1148
Bbv12I GWGCWC 1 cut(s) 1101
BbvCI CCTCAGC 1 cut(s) 980
BbvI GCAGC 2 cut(s) 629, 781
BccI CCATC 6 cut(s) 281, 656, 685, 721, 796, 1288
BciT130I CCWGG 2 cut(s) 799, 852
BcoDI GTCTC 2 cut(s) 384, 484
BcuI ACTAGT 1 cut(s) 307
BfaI CTAG 4 cut(s) 308, 494, 627, 639
BfoI RGCGCY 1 cut(s) 1187
BisI GCNGC 5 cut(s) 618, 795, 1198, 1205, 1208
BlsI GCNGC 5 cut(s) 619, 796, 1199, 1206, 1209
Bme1390I CCNGG 2 cut(s) 799, 852
BmgT120I GGNCC 2 cut(s) 259, 898
BmiI GGNNCC 5 cut(s) 27, 81, 273, 900, 1185
BmrFI CCNGG 2 cut(s) 799, 852
BmrI ACTGGG 1 cut(s) 1189
BmsI GCATC 5 cut(s) 489, 657, 709, 907, 1219
BmtI GCTAGC 1 cut(s) 642
BmuI ACTGGG 1 cut(s) 1189
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 980
BsaHI GRCGYC 1 cut(s) 1184
BsaJI CCNNGG 3 cut(s) 850, 894, 922
BsaWI WCCGGW 2 cut(s) 328, 743
Bsc4I CCNNNNNNNGG 7 cut(s) 267, 268, 856, 927, 928, 1193, 1214
Bse118I RCCGGY 2 cut(s) 743, 1118
Bse1I ACTGG 6 cut(s) 42, 416, 517, 757, 1057, 1184
Bse3DI GCAATG 2 cut(s) 164, 1129
BseBI CCWGG 2 cut(s) 799, 852
BseDI CCNNGG 3 cut(s) 850, 894, 922
BseGI GGATG 5 cut(s) 73, 667, 672, 700, 807
BseLI CCNNNNNNNGG 7 cut(s) 267, 268, 856, 927, 928, 1193, 1214
BseMI GCAATG 2 cut(s) 164, 1129
BseMII CTCAG 4 cut(s) 437, 447, 896, 994
BseNI ACTGG 6 cut(s) 42, 416, 517, 757, 1057, 1184
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 2 cut(s) 276, 1101
BseX3I CGGCCG 1 cut(s) 1195
BseXI GCAGC 2 cut(s) 629, 781
Bsh1285I CGRYCG 1 cut(s) 1198
BshFI GGCC 4 cut(s) 260, 899, 1118, 1197
BshNI GGYRCC 2 cut(s) 271, 1183
BshTI ACCGGT 1 cut(s) 743
BsiEI CGRYCG 1 cut(s) 1198
BsiHKAI GWGCWC 1 cut(s) 1101
BsiSI CCGG 3 cut(s) 329, 744, 1119
BslI CCNNNNNNNGG 7 cut(s) 267, 268, 856, 927, 928, 1193, 1214
BsmAI GTCTC 2 cut(s) 384, 484
BsnI GGCC 4 cut(s) 260, 899, 1118, 1197
Bsp1286I GDGCHC 3 cut(s) 276, 1101, 1148
Bsp143I GATC 5 cut(s) 25, 158, 555, 1077, 1269
BspACI CCGC 6 cut(s) 790, 1198, 1202, 1205, 1208, 1245
BspANI GGCC 4 cut(s) 260, 899, 1118, 1197
BspCNI CTCAG 4 cut(s) 438, 448, 895, 993
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 5 cut(s) 27, 81, 273, 900, 1185
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 4 cut(s) 20, 33, 166, 550
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 2 cut(s) 271, 1183
BsrBI CCGCTC 1 cut(s) 790
BsrDI GCAATG 2 cut(s) 164, 1129
BsrFI RCCGGY 2 cut(s) 743, 1118
BsrI ACTGG 6 cut(s) 42, 416, 517, 757, 1057, 1184
BssAI RCCGGY 2 cut(s) 743, 1118
BssECI CCNNGG 3 cut(s) 850, 894, 922
BssMI GATC 5 cut(s) 25, 158, 555, 1077, 1269
BssNI GRCGYC 1 cut(s) 1184
BssT1I CCWWGG 2 cut(s) 894, 922
Bst2UI CCWGG 2 cut(s) 799, 852
Bst6I CTCTTC 2 cut(s) 348, 1125
BstACI GRCGYC 1 cut(s) 1184
BstAPI GCANNNNNTGC 2 cut(s) 311, 623
BstC8I GCNNGC 5 cut(s) 504, 640, 792, 1120, 1202
BstDEI CTNAG 4 cut(s) 446, 456, 882, 980
BstF5I GGATG 5 cut(s) 73, 667, 672, 700, 807
BstH2I RGCGCY 1 cut(s) 1187
BstHHI GCGC 2 cut(s) 644, 1186
BstKTI GATC 5 cut(s) 28, 161, 558, 1080, 1272
BstMAI GTCTC 2 cut(s) 384, 484
BstMBI GATC 5 cut(s) 25, 158, 555, 1077, 1269
BstMCI CGRYCG 1 cut(s) 1198
BstMWI GCNNNNNNNGC 4 cut(s) 257, 311, 586, 623
BstNI CCWGG 2 cut(s) 799, 852
BstSCI CCNGG 2 cut(s) 797, 850
BstSLI GKGCMC 2 cut(s) 276, 1101
BstV1I GCAGC 2 cut(s) 629, 781
BstX2I RGATCY 2 cut(s) 25, 158
BstYI RGATCY 2 cut(s) 25, 158
BstZI CGGCCG 1 cut(s) 1195
BsuRI GGCC 4 cut(s) 260, 899, 1118, 1197
BtsCI GGATG 5 cut(s) 73, 667, 672, 700, 807
BtsIMutI CAGTG 2 cut(s) 438, 510
Cac8I GCNNGC 5 cut(s) 504, 640, 792, 1120, 1202
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 2 cut(s) 644, 1186
Cfr10I RCCGGY 2 cut(s) 743, 1118
Cfr13I GGNCC 2 cut(s) 259, 898
Csp6I GTAC 5 cut(s) 133, 595, 687, 1060, 1177
CspAI ACCGGT 1 cut(s) 743
CviAII CATG 5 cut(s) 155, 815, 944, 1001, 1256
CviQI GTAC 5 cut(s) 133, 595, 687, 1060, 1177
DdeI CTNAG 4 cut(s) 446, 456, 882, 980
DinI GGCGCC 1 cut(s) 1185
DpnI GATC 5 cut(s) 27, 160, 557, 1079, 1271
DpnII GATC 5 cut(s) 25, 158, 555, 1077, 1269
DraI TTTAAA 1 cut(s) 990
EaeI YGGCCR 1 cut(s) 1195
EagI CGGCCG 1 cut(s) 1195
Eam1104I CTCTTC 2 cut(s) 348, 1125
EarI CTCTTC 2 cut(s) 348, 1125
EclXI CGGCCG 1 cut(s) 1195
Eco130I CCWWGG 2 cut(s) 894, 922
Eco24I GRGCYC 1 cut(s) 1148
Eco52I CGGCCG 1 cut(s) 1195
Eco57I CTGAAG 2 cut(s) 51, 1066
EcoO109I RGGNCCY 1 cut(s) 898
EcoRII CCWGG 2 cut(s) 797, 850
EcoT14I CCWWGG 2 cut(s) 894, 922
EcoT38I GRGCYC 1 cut(s) 1148
EgeI GGCGCC 1 cut(s) 1185
EheI GGCGCC 1 cut(s) 1185
ErhI CCWWGG 2 cut(s) 894, 922
FaeI CATG 5 cut(s) 158, 818, 947, 1004, 1259
FatI CATG 5 cut(s) 154, 814, 943, 1000, 1255
FauI CCCGC 2 cut(s) 783, 1209
Fnu4HI GCNGC 5 cut(s) 618, 795, 1198, 1205, 1208
FokI GGATG 5 cut(s) 80, 674, 679, 687, 814
FriOI GRGCYC 1 cut(s) 1148
Fsp4HI GCNGC 5 cut(s) 618, 795, 1198, 1205, 1208
FspBI CTAG 4 cut(s) 308, 494, 627, 639
GlaI GCGC 2 cut(s) 643, 1185
GluI GCNGC 5 cut(s) 618, 795, 1198, 1205, 1208
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 1187
HaeIII GGCC 4 cut(s) 260, 899, 1118, 1197
HapII CCGG 3 cut(s) 329, 744, 1119
HhaI GCGC 2 cut(s) 644, 1186
Hin1I GRCGYC 1 cut(s) 1184
Hin1II CATG 5 cut(s) 158, 818, 947, 1004, 1259
Hin6I GCGC 2 cut(s) 642, 1184
HinP1I GCGC 2 cut(s) 642, 1184
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 6 cut(s) 428, 571, 1012, 1133, 1265, 1287
HpaII CCGG 3 cut(s) 329, 744, 1119
HphI GGTGA 5 cut(s) 452, 542, 767, 1049, 1218
Hpy166II GTNNAC 2 cut(s) 443, 1099
Hpy188I TCNGA 6 cut(s) 25, 427, 457, 489, 750, 885
Hpy188III TCNNGA 7 cut(s) 29, 53, 83, 479, 1001, 1016, 1284
Hpy8I GTNNAC 2 cut(s) 443, 1099
HpyAV CCTTC 7 cut(s) 26, 295, 367, 395, 521, 652, 921
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 311, 586, 623
HpyF3I CTNAG 4 cut(s) 446, 456, 882, 980
Hsp92I GRCGYC 1 cut(s) 1184
Hsp92II CATG 5 cut(s) 158, 818, 947, 1004, 1259
HspAI GCGC 2 cut(s) 642, 1184
KasI GGCGCC 1 cut(s) 1183
KroI GCCGGC 1 cut(s) 1118
KroNI GCCGGC 1 cut(s) 1120
Kzo9I GATC 5 cut(s) 25, 158, 555, 1077, 1269
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 3 cut(s) 40, 787, 835
Lsp1109I GCAGC 2 cut(s) 629, 781
LweI GCATC 5 cut(s) 489, 657, 709, 907, 1219
MaeI CTAG 4 cut(s) 308, 494, 627, 639
MaeIII GTNAC 1 cut(s) 961
MalI GATC 5 cut(s) 27, 160, 557, 1079, 1271
MbiI CCGCTC 1 cut(s) 790
MboI GATC 5 cut(s) 25, 158, 555, 1077, 1269
MboII GAAGA 9 cut(s) 83, 154, 203, 335, 382, 467, 899, 1072, 1142
MflI RGATCY 2 cut(s) 25, 158
MhlI GDGCHC 3 cut(s) 276, 1101, 1148
MluCI AATT 6 cut(s) 74, 181, 315, 720, 824, 1221
Mly113I GGCGCC 1 cut(s) 1184
MlyI GAGTC 3 cut(s) 565, 1142, 1281
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 9 cut(s) 58, 100, 103, 441, 684, 891, 989, 1108, 1176
MroNI GCCGGC 1 cut(s) 1118
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 989, 1297
MslI CAYNNNNRTG 1 cut(s) 948
MspI CCGG 3 cut(s) 329, 744, 1119
MspR9I CCNGG 2 cut(s) 799, 852
MvaI CCWGG 2 cut(s) 799, 852
MwoI GCNNNNNNNGC 4 cut(s) 257, 311, 586, 623
NaeI GCCGGC 1 cut(s) 1120
NarI GGCGCC 1 cut(s) 1184
NdeII GATC 5 cut(s) 25, 158, 555, 1077, 1269
NgoMIV GCCGGC 1 cut(s) 1118
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 5 cut(s) 158, 818, 947, 1004, 1259
NlaIV GGNNCC 5 cut(s) 27, 81, 273, 900, 1185
NmeAIII GCCGAG 1 cut(s) 1173
NmuCI GTSAC 1 cut(s) 961
PagI TCATGA 1 cut(s) 1000
PciSI GCTCTTC 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 1068
PdiI GCCGGC 1 cut(s) 1120
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 428, 1012, 1265
PinAI ACCGGT 1 cut(s) 743
PkrI GCNGC 5 cut(s) 619, 796, 1199, 1206, 1209
PleI GAGTC 3 cut(s) 565, 1141, 1281
PluTI GGCGCC 1 cut(s) 1187
PpsI GAGTC 3 cut(s) 565, 1141, 1281
PsiI TTATAA 1 cut(s) 839
Psp6I CCWGG 2 cut(s) 797, 850
PspGI CCWGG 2 cut(s) 797, 850
PspN4I GGNNCC 5 cut(s) 27, 81, 273, 900, 1185
PspPI GGNCC 2 cut(s) 259, 898
PsrI GAACNNNNNNTAC 2 cut(s) 1052, 1084
PsuI RGATCY 2 cut(s) 25, 158
RsaI GTAC 5 cut(s) 134, 596, 688, 1061, 1178
RsaNI GTAC 5 cut(s) 133, 595, 687, 1060, 1177
RseI CAYNNNNRTG 1 cut(s) 948
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 989, 1297
SatI GCNGC 5 cut(s) 618, 795, 1198, 1205, 1208
Sau3AI GATC 5 cut(s) 25, 158, 555, 1077, 1269
Sau96I GGNCC 2 cut(s) 259, 898
SchI GAGTC 3 cut(s) 565, 1142, 1281
ScrFI CCNGG 2 cut(s) 799, 852
SduI GDGCHC 3 cut(s) 276, 1101, 1148
SfaNI GCATC 5 cut(s) 489, 657, 709, 907, 1219
SfoI GGCGCC 1 cut(s) 1185
SmiMI CAYNNNNRTG 1 cut(s) 948
SpeI ACTAGT 1 cut(s) 307
Sse9I AATT 6 cut(s) 74, 181, 315, 720, 824, 1221
SsiI CCGC 6 cut(s) 790, 1198, 1202, 1205, 1208, 1245
SspDI GGCGCC 1 cut(s) 1183
SspMI CTAG 4 cut(s) 308, 494, 627, 639
StyD4I CCNGG 2 cut(s) 797, 850
StyI CCWWGG 2 cut(s) 894, 922
TaqI TCGA 5 cut(s) 525, 910, 1071, 1268, 1290
TasI AATT 6 cut(s) 74, 181, 315, 720, 824, 1221
TatI WGTACW 2 cut(s) 594, 686
TauI GCSGC 3 cut(s) 1200, 1207, 1210
TfiI GAWTC 3 cut(s) 428, 1012, 1265
Tru1I TTAA 2 cut(s) 989, 1297
Tru9I TTAA 2 cut(s) 989, 1297
TscAI CASTG 2 cut(s) 438, 517
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 2 cut(s) 617, 794
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 5 cut(s) 84, 143, 204, 780, 954
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 2 cut(s) 438, 517
VneI GTGCAC 1 cut(s) 1097
XapI RAATTY 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 4 cut(s) 308, 494, 627, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.