pycom01g14520

U4 U6 small nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
14661070 .. 14663443
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g14520.1

Sequence Viewer

Length: 1260 bp
ATGGAGAAAGACAAATCGAGCAAACGCGACCGCAGGGATCGAGACAGAGACTACGATAAGCATCGCAGCCGTGACGCCGATGAAAAGCGATCGTCAAAGGACTCCGATTACCACCGCCACCACCACCGATCGGACCGTGATTCCAAGCGCGAGCCCCGCGACCACAAATCTCGTCGGGAACGGTCACGCGAGCCGAGTGAAGACGGCAGGGATGTCTCGCGCGACCATCGCGAGCGGTCCTACGAGCCCAGGGCCGAGAGGGAAGGGAGCAGAGAGAGGTCCAGGCATCGGGAAGCGAAACGCGAGAGGTCGGAGGAGCGAGAGGAATCGAAGCGTAAGAGGAAAGAGAGGGAGAGGAGTGAGGGTAGAGATGGCGATGGTGATGGTTTAGAAGATAAGAAGAGGTCTAGGGTTTTGGAAGGGGAGAGGAGAGAGAGTAAGCGATTCGAGGAAGATGGGCAGGAAGTGAATGGAGGTCAGAGAAAGAGTAGGAGGTTTGATGACCGCAGAGTAAAGGCGGAAGAGGACGGAGAGAATTGCGGAGCTGTTGAACGGAGAACTGAATTGAATGTGAATGCGAGTGAGGTTAATGTTAAGAAAGAAGAAGTTGGGGATGATCAGATTGGCAATTTCCAGAACGCCGCCCCCGCCCCAAATGGGAGTGGTTGGGTGGGTAATGGTGCTGCTCTGGAACCTACTATGACATCAAGGACTATGCCTGAGACCTCTTTTTCTCCCAATCAACCCCTTCCTACCAAGATGGAACATCTTCAACTGCTGGGAAAAGGTGGCAATGCAAGCAAAGATGCTAGCCATAACTTGGAAACGAAGGAGGCACTTAAACCACCATCAACCACTGCTGGGATACTACGTGCACCGGCCCCATCAACAGCTGGTGGTACAGCTGCTTCTGTGGCAACATTTGATTCATCTGCACTACCCATTTCTGCAGCAGGCATTCCCAATTTTGAAGCTGTAAAACGTGCACAAGAGCTTGCTGCTCAGATGGGGTTCCATCAAGACCCCGAGTTTTCTCCTCTTATAAATGTGTTTCCCGGACAGGTGGCAACTGATGCCCCTCAGAAGCCTACTAAGGCCCCTGTTCTTCGTCTTGATGCCCTTGGAAGGGAAATAGATGAGCACGGAAACTTAGTGAATGTGACCAAACCAAACAACCTCAGCACTCTAAAGGTCAACATTAACAAAAAGAAGAAAGAAGCATTCCAGATTCTAAAACCTGAATTGGATGTGGATCCTTAA

Protein Analysis

420

Amino Acids

47.31

Weight (kDa)

9.01

Isoelectric Point (pI)

66.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1043
AccB7I CCANNNNNTGG 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 235
AccII CGCG 8 cut(s) 27, 150, 159, 189, 220, 222, 231, 303
AciI CCGC 9 cut(s) 31, 115, 157, 235, 505, 518, 540, 642, 648
AclWI GGATC 2 cut(s) 45, 1247
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 901
AfiI CCNNNNNNNGG 7 cut(s) 130, 288, 657, 820, 861, 1125, 1126
AgsI TTSAA 4 cut(s) 551, 568, 773, 971
AjnI CCWGG 2 cut(s) 248, 281
AluBI AGCT 5 cut(s) 545, 893, 905, 974, 994
AluI AGCT 5 cut(s) 545, 893, 905, 974, 994
Alw21I GWGCWC 3 cut(s) 877, 988, 1143
Alw26I GTCTC 4 cut(s) 36, 42, 220, 716
Alw44I GTGCAC 2 cut(s) 873, 984
AlwI GGATC 2 cut(s) 45, 1247
Ama87I CYCGRG 1 cut(s) 1025
AoxI GGCC 3 cut(s) 252, 879, 1095
ApaLI GTGCAC 2 cut(s) 873, 984
ApeKI GCWGC 5 cut(s) 66, 683, 905, 950, 998
Asp700I GAANNNNTTC 1 cut(s) 768
AspLEI GCGC 2 cut(s) 150, 222
AspS9I GGNCC 6 cut(s) 133, 237, 252, 279, 880, 1096
AsuC2I CCSGG 1 cut(s) 1056
AsuHPI GGTGA 1 cut(s) 392
AsuNHI GCTAGC 1 cut(s) 809
AvaI CYCGRG 1 cut(s) 1025
AvaII GGWCC 3 cut(s) 133, 237, 279
BaeGI GKGCMC 2 cut(s) 877, 988
BamHI GGATCC 1 cut(s) 1252
BanII GRGCYC 2 cut(s) 156, 249
BarI GAAGNNNNNNTAC 2 cut(s) 892, 924
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 3 cut(s) 877, 988, 1143
BbvCI CCTCAGC 1 cut(s) 1178
BbvI GCAGC 5 cut(s) 78, 670, 892, 962, 985
BceAI ACGGC 2 cut(s) 54, 220
BciT130I CCWGG 2 cut(s) 250, 283
BciVI GTATCC 1 cut(s) 858
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 1 cut(s) 1056
BcoDI GTCTC 4 cut(s) 36, 42, 220, 716
BfaI CTAG 2 cut(s) 408, 810
BfmI CTRYAG 1 cut(s) 948
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 6 cut(s) 67, 642, 684, 906, 951, 999
BlsI GCNGC 6 cut(s) 68, 643, 685, 907, 952, 1000
Bme1390I CCNGG 3 cut(s) 250, 283, 1056
Bme18I GGWCC 3 cut(s) 133, 237, 279
BmeT110I CYCGRG 1 cut(s) 1025
BmgT120I GGNCC 6 cut(s) 133, 237, 252, 279, 880, 1096
BmiI GGNNCC 5 cut(s) 693, 882, 1013, 1098, 1254
BmrFI CCNGG 3 cut(s) 250, 283, 1056
BmsI GCATC 5 cut(s) 70, 295, 796, 1063, 1105
BmtI GCTAGC 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 1178
BpuMI CCSGG 1 cut(s) 1056
BsaAI YACGTR 1 cut(s) 872
BsaBI GATNNNNATC 2 cut(s) 60, 1251
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 716
BsaJI CCNNGG 3 cut(s) 248, 249, 1120
BsaXI ACNNNNNCTCC 4 cut(s) 349, 379, 421, 451
Bsc4I CCNNNNNNNGG 7 cut(s) 130, 288, 657, 820, 861, 1125, 1126
Bse118I RCCGGY 1 cut(s) 877
Bse3DI GCAATG 1 cut(s) 799
Bse8I GATNNNNATC 2 cut(s) 60, 1251
BseBI CCWGG 2 cut(s) 250, 283
BseDI CCNNGG 3 cut(s) 248, 249, 1120
BseGI GGATG 3 cut(s) 217, 619, 1252
BseJI GATNNNNATC 2 cut(s) 60, 1251
BseLI CCNNNNNNNGG 7 cut(s) 130, 288, 657, 820, 861, 1125, 1126
BseMI GCAATG 1 cut(s) 799
BseMII CTCAG 4 cut(s) 711, 1016, 1094, 1192
BseRI GAGGAG 4 cut(s) 329, 370, 442, 1026
BseSI GKGCMC 2 cut(s) 877, 988
BseXI GCAGC 5 cut(s) 78, 670, 892, 962, 985
BseYI CCCAGC 2 cut(s) 778, 860
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 8 cut(s) 27, 150, 159, 189, 220, 222, 231, 303
Bsh1285I CGRYCG 3 cut(s) 31, 92, 131
BshFI GGCC 3 cut(s) 254, 881, 1097
BsiEI CGRYCG 3 cut(s) 31, 92, 131
BsiHKAI GWGCWC 3 cut(s) 877, 988, 1143
BsiHKCI CYCGRG 1 cut(s) 1025
BsiSI CCGG 2 cut(s) 878, 1056
BslI CCNNNNNNNGG 7 cut(s) 130, 288, 657, 820, 861, 1125, 1126
BsmAI GTCTC 4 cut(s) 36, 42, 220, 716
BsmI GAATGC 3 cut(s) 580, 957, 1220
BsnI GGCC 3 cut(s) 254, 881, 1097
Bso31I GGTCTC 1 cut(s) 716
BsoBI CYCGRG 1 cut(s) 1025
Bsp1286I GDGCHC 5 cut(s) 156, 249, 877, 988, 1143
Bsp143I GATC 5 cut(s) 37, 89, 128, 616, 1252
Bsp68I TCGCGA 1 cut(s) 231
BspACI CCGC 9 cut(s) 31, 115, 157, 235, 505, 518, 540, 642, 648
BspANI GGCC 3 cut(s) 254, 881, 1097
BspCNI CTCAG 4 cut(s) 712, 1015, 1093, 1191
BspFNI CGCG 8 cut(s) 27, 150, 159, 189, 220, 222, 231, 303
BspLI GGNNCC 5 cut(s) 693, 882, 1013, 1098, 1254
BspMAI CTGCAG 1 cut(s) 952
BspOI GCTAGC 1 cut(s) 813
BspPI GGATC 2 cut(s) 45, 1247
BspTNI GGTCTC 1 cut(s) 716
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 799
BsrFI RCCGGY 1 cut(s) 877
BssAI RCCGGY 1 cut(s) 877
BssECI CCNNGG 3 cut(s) 248, 249, 1120
BssMI GATC 5 cut(s) 37, 89, 128, 616, 1252
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 1120
Bst2UI CCWGG 2 cut(s) 250, 283
Bst4CI ACNGT 2 cut(s) 137, 183
Bst6I CTCTTC 2 cut(s) 395, 516
BstACI GRCGYC 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 1073
BstBAI YACGTR 1 cut(s) 872
BstC8I GCNNGC 7 cut(s) 152, 191, 233, 799, 811, 955, 996
BstDEI CTNAG 6 cut(s) 720, 1002, 1080, 1092, 1150, 1178
BstF5I GGATG 3 cut(s) 217, 619, 1252
BstFNI CGCG 8 cut(s) 27, 150, 159, 189, 220, 222, 231, 303
BstHHI GCGC 2 cut(s) 150, 222
BstKTI GATC 5 cut(s) 40, 92, 131, 619, 1255
BstMAI GTCTC 4 cut(s) 36, 42, 220, 716
BstMBI GATC 5 cut(s) 37, 89, 128, 616, 1252
BstMCI CGRYCG 3 cut(s) 31, 92, 131
BstMWI GCNNNNNNNGC 6 cut(s) 156, 228, 647, 798, 914, 1073
BstNI CCWGG 2 cut(s) 250, 283
BstSCI CCNGG 3 cut(s) 248, 281, 1054
BstSFI CTRYAG 1 cut(s) 948
BstSLI GKGCMC 2 cut(s) 877, 988
BstUI CGCG 8 cut(s) 27, 150, 159, 189, 220, 222, 231, 303
BstV1I GCAGC 5 cut(s) 78, 670, 892, 962, 985
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 1252
BstYI RGATCY 1 cut(s) 1252
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 3 cut(s) 254, 881, 1097
BtgZI GCGATG 3 cut(s) 47, 212, 390
BtsCI GGATG 3 cut(s) 217, 619, 1252
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 1 cut(s) 855
BtuMI TCGCGA 1 cut(s) 231
Cac8I GCNNGC 7 cut(s) 152, 191, 233, 799, 811, 955, 996
CfoI GCGC 2 cut(s) 150, 222
Cfr10I RCCGGY 1 cut(s) 877
Cfr13I GGNCC 6 cut(s) 133, 237, 252, 279, 880, 1096
CpoI CGGWCCG 1 cut(s) 133
CseI GACGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 900
CspI CGGWCCG 1 cut(s) 133
CviQI GTAC 1 cut(s) 900
DdeI CTNAG 6 cut(s) 720, 1002, 1080, 1092, 1150, 1178
DpnI GATC 5 cut(s) 39, 91, 130, 618, 1254
DpnII GATC 5 cut(s) 37, 89, 128, 616, 1252
Eam1104I CTCTTC 2 cut(s) 395, 516
EarI CTCTTC 2 cut(s) 395, 516
EciI GGCGGA 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 1120
Eco24I GRGCYC 2 cut(s) 156, 249
Eco31I GGTCTC 1 cut(s) 716
Eco47I GGWCC 3 cut(s) 133, 237, 279
Eco88I CYCGRG 1 cut(s) 1025
EcoO109I RGGNCCY 1 cut(s) 1096
EcoRII CCWGG 2 cut(s) 248, 281
EcoT14I CCWWGG 1 cut(s) 1120
EcoT38I GRGCYC 2 cut(s) 156, 249
ErhI CCWWGG 1 cut(s) 1120
FaiI YATR 4 cut(s) 701, 716, 816, 1043
FauI CCCGC 2 cut(s) 164, 655
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 6 cut(s) 67, 642, 684, 906, 951, 999
FokI GGATG 2 cut(s) 224, 626
FriOI GRGCYC 2 cut(s) 156, 249
Fsp4HI GCNGC 6 cut(s) 67, 642, 684, 906, 951, 999
FspBI CTAG 2 cut(s) 408, 810
GlaI GCGC 2 cut(s) 149, 221
GluI GCNGC 6 cut(s) 67, 642, 684, 906, 951, 999
GsaI CCCAGC 2 cut(s) 782, 864
HaeIII GGCC 3 cut(s) 254, 881, 1097
HapII CCGG 2 cut(s) 878, 1056
HgaI GACGC 1 cut(s) 83
HhaI GCGC 2 cut(s) 150, 222
Hin1I GRCGYC 1 cut(s) 75
Hin6I GCGC 2 cut(s) 148, 220
HinP1I GCGC 2 cut(s) 148, 220
HincII GTYRAC 1 cut(s) 1195
HindII GTYRAC 1 cut(s) 1195
HinfI GANTC 6 cut(s) 101, 140, 326, 444, 926, 1228
HpaII CCGG 2 cut(s) 878, 1056
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 3 cut(s) 875, 986, 1195
Hpy188I TCNGA 7 cut(s) 106, 133, 313, 480, 621, 1005, 1083
Hpy188III TCNNGA 9 cut(s) 41, 176, 230, 290, 634, 689, 1019, 1112, 1225
Hpy8I GTNNAC 3 cut(s) 875, 986, 1195
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 5 cut(s) 257, 413, 758, 823, 1119
HpyCH4III ACNGT 2 cut(s) 137, 183
HpyCH4IV ACGT 2 cut(s) 871, 982
HpyCH4V TGCA 5 cut(s) 797, 875, 935, 950, 986
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 228, 647, 798, 914, 1073
HpyF3I CTNAG 6 cut(s) 720, 1002, 1080, 1092, 1150, 1178
HpySE526I ACGT 2 cut(s) 871, 982
Hsp92I GRCGYC 1 cut(s) 75
HspAI GCGC 2 cut(s) 148, 220
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 5 cut(s) 37, 89, 128, 616, 1252
LmnI GCTCC 3 cut(s) 267, 316, 542
Lsp1109I GCAGC 5 cut(s) 78, 670, 892, 962, 985
LweI GCATC 5 cut(s) 70, 295, 796, 1063, 1105
MaeI CTAG 2 cut(s) 408, 810
MaeII ACGT 2 cut(s) 871, 982
MaeIII GTNAC 3 cut(s) 71, 183, 1159
MalI GATC 5 cut(s) 39, 91, 130, 618, 1254
MbiI CCGCTC 1 cut(s) 235
MboI GATC 5 cut(s) 37, 89, 128, 616, 1252
MboII GAAGA 9 cut(s) 212, 404, 412, 464, 533, 614, 761, 1097, 1222
MflI RGATCY 1 cut(s) 1252
MhlI GDGCHC 5 cut(s) 156, 249, 877, 988, 1143
MluCI AATT 5 cut(s) 535, 563, 628, 964, 1241
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 768
MseI TTAA 5 cut(s) 588, 594, 840, 1200, 1258
MspA1I CMGCKG 2 cut(s) 893, 905
MspI CCGG 2 cut(s) 878, 1056
MspR9I CCNGG 3 cut(s) 250, 283, 1056
Mva1269I GAATGC 3 cut(s) 580, 957, 1220
MvaI CCWGG 2 cut(s) 250, 283
MvnI CGCG 8 cut(s) 27, 150, 159, 189, 220, 222, 231, 303
MwoI GCNNNNNNNGC 6 cut(s) 156, 228, 647, 798, 914, 1073
NciI CCSGG 1 cut(s) 1056
NdeII GATC 5 cut(s) 37, 89, 128, 616, 1252
NheI GCTAGC 1 cut(s) 809
NlaIV GGNNCC 5 cut(s) 693, 882, 1013, 1098, 1254
NmeAIII GCCGAG 2 cut(s) 219, 280
NmuCI GTSAC 3 cut(s) 71, 183, 1159
NruI TCGCGA 1 cut(s) 231
PasI CCCWGGG 1 cut(s) 249
PctI GAATGC 3 cut(s) 580, 957, 1220
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 5 cut(s) 140, 326, 444, 926, 1228
PflMI CCANNNNNTGG 1 cut(s) 820
PfoI TCCNGGA 1 cut(s) 1054
PkrI GCNGC 6 cut(s) 68, 643, 685, 907, 952, 1000
Ple19I CGATCG 2 cut(s) 92, 131
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 872
PsiI TTATAA 1 cut(s) 1043
Psp6I CCWGG 2 cut(s) 248, 281
PspFI CCCAGC 2 cut(s) 778, 860
PspGI CCWGG 2 cut(s) 248, 281
PspN4I GGNNCC 5 cut(s) 693, 882, 1013, 1098, 1254
PspPI GGNCC 6 cut(s) 133, 237, 252, 279, 880, 1096
PstI CTGCAG 1 cut(s) 952
PsuI RGATCY 1 cut(s) 1252
PvuI CGATCG 2 cut(s) 92, 131
PvuII CAGCTG 2 cut(s) 893, 905
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 1 cut(s) 901
RsaNI GTAC 1 cut(s) 900
Rsr2I CGGWCCG 1 cut(s) 133
RsrII CGGWCCG 1 cut(s) 133
SaqAI TTAA 5 cut(s) 588, 594, 840, 1200, 1258
SatI GCNGC 6 cut(s) 67, 642, 684, 906, 951, 999
Sau3AI GATC 5 cut(s) 37, 89, 128, 616, 1252
Sau96I GGNCC 6 cut(s) 133, 237, 252, 279, 880, 1096
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 250, 283, 1056
SduI GDGCHC 5 cut(s) 156, 249, 877, 988, 1143
SfaNI GCATC 5 cut(s) 70, 295, 796, 1063, 1105
SfcI CTRYAG 1 cut(s) 948
SinI GGWCC 3 cut(s) 133, 237, 279
Sse9I AATT 5 cut(s) 535, 563, 628, 964, 1241
SsiI CCGC 9 cut(s) 31, 115, 157, 235, 505, 518, 540, 642, 648
SspMI CTAG 2 cut(s) 408, 810
StyD4I CCNGG 3 cut(s) 248, 281, 1054
StyI CCWWGG 1 cut(s) 1120
TaaI ACNGT 2 cut(s) 137, 183
TaiI ACGT 2 cut(s) 874, 985
TaqI TCGA 4 cut(s) 17, 40, 329, 447
TasI AATT 5 cut(s) 535, 563, 628, 964, 1241
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 5 cut(s) 140, 326, 444, 926, 1228
Tru1I TTAA 5 cut(s) 588, 594, 840, 1200, 1258
Tru9I TTAA 5 cut(s) 588, 594, 840, 1200, 1258
TscAI CASTG 1 cut(s) 862
TseFI GTSAC 3 cut(s) 71, 183, 1159
TseI GCWGC 5 cut(s) 66, 683, 905, 950, 998
Tsp45I GTSAC 3 cut(s) 71, 183, 1159
TspDTI ATGAA 2 cut(s) 96, 918
TspGWI ACGGA 3 cut(s) 543, 568, 1158
TspRI CASTG 1 cut(s) 862
Van91I CCANNNNNTGG 1 cut(s) 820
VneI GTGCAC 2 cut(s) 873, 984
VpaK11BI GGWCC 3 cut(s) 133, 237, 279
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 2 cut(s) 408, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.