Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Reverse (-)

16664281 .. 16666618

Gene Structure 2338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCAAGCCGAGGGAAGTGTTACTGGAGGAGCGAGGTAAGGATTGGAGGAAGATTGATCAACAGTTGGAGCATCGCTCTGTTGACAGCGGATCCTGAAGGATTGGAGCTTATCATTCCTGATTGCTGTGAGGATGAAGAATTGGTTCCAGAAAAAACATACTTTGGTGGAGAGGAGGGTGTTGGAGAGTATATTTGGTACAGAACGAAGAATAAGCTTCATGGATCTGCATTGCTGGATATATCTAATTTGAATGAAGATGTTGCTCTTCCTGTGGTTTCTAATGTTCGTGTGAAGAAGGTGTCTCTGTCTGTTTATTCTGGGGAAGGAGAGTATTTTGGTGGATATGAGGGATGGAGCCTTTTTAGCTGGTATAGAGAAACTAATGATGGAACTATCAGTCTTATTAATGGGGCCAACTCTCGAACTTATGAAGTCACTGATGCAGACTACAACTGCCGTTTATTGTTTGGATATACACTAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGAGCTTCCGAGACTAGAGATGCTTGTTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACCGTTGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGTGCTACCGTGCTAGTTTTGAATATTTCCATTGGCAAGTGGTGTGCAGATTTTATTTTCAAATTGGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

252

Amino Acids

28.42

Weight (kDa)

4.69

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	38 - 73	1.3e-06	AIR9 A9 domain
IG_AIR9	PF23197	104 - 172	2.8e-15	AIR9 A9 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	4 cut(s)	86, 99, 232, 616
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	2 cut(s)	200, 662
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	253, 617, 706, 745
AhlI	ACTAGT	1 cut(s)	481
AluBI	AGCT	5 cut(s)	109, 217, 369, 550, 646
AluI	AGCT	5 cut(s)	109, 217, 369, 550, 646
Alw26I	GTCTC	2 cut(s)	309, 550
AlwI	GGATC	4 cut(s)	86, 99, 232, 616
AoxI	GGCC	1 cut(s)	414
ArsI	GACNNNNNNTTYG	1 cut(s)	738
AseI	ATTAAT	1 cut(s)	408
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	518, 608
BamHI	GGATCC	1 cut(s)	91
BccI	CCATC	2 cut(s)	348, 383
BceAI	ACGGC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	309, 550
BcuI	ACTAGT	1 cut(s)	481
BfaI	CTAG	4 cut(s)	482, 560, 698, 757
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	4 cut(s)	93, 147, 359, 415
BmsI	GCATC	3 cut(s)	81, 433, 555
BplI	GAGNNNNNCTC	4 cut(s)	61, 93, 622, 654
BpmI	CTGGAG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	29, 583
Bse3DI	GCAATG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	139, 359, 757
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	503, 513
BseNI	ACTGG	2 cut(s)	29, 583
BseRI	GAGGAG	2 cut(s)	43, 188
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	2 cut(s)	309, 550
BsnI	GGCC	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	57, 91, 224, 621
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	504, 514
BspLI	GGNNCC	4 cut(s)	93, 147, 359, 415
BspPI	GGATC	4 cut(s)	86, 99, 232, 616
BspQI	GCTCTTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	29, 583
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	4 cut(s)	57, 91, 224, 621
Bst4CI	ACNGT	3 cut(s)	65, 610, 694
Bst6I	CTCTTC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	512, 522
BstF5I	GGATG	3 cut(s)	139, 359, 757
BstKTI	GATC	4 cut(s)	60, 94, 227, 624
BstMAI	GTCTC	2 cut(s)	309, 550
BstMBI	GATC	4 cut(s)	57, 91, 224, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 652
BstX2I	RGATCY	2 cut(s)	91, 224
BstYI	RGATCY	2 cut(s)	91, 224
BsuRI	GGCC	1 cut(s)	416
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	139, 359, 757
BtsIMutI	CAGTG	3 cut(s)	438, 504, 576
Cfr13I	GGNCC	1 cut(s)	414
Csp6I	GTAC	2 cut(s)	199, 661
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	9 cut(s)	9, 109, 217, 360, 369, 416, 526, 550, 646
CviKI_1	RGCY	9 cut(s)	9, 109, 217, 360, 369, 416, 526, 550, 646
CviQI	GTAC	2 cut(s)	199, 661
DdeI	CTNAG	2 cut(s)	512, 522
DpnI	GATC	4 cut(s)	59, 93, 226, 623
DpnII	GATC	4 cut(s)	57, 91, 224, 621
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	680
FaeI	CATG	1 cut(s)	224
FaiI	YATR	8 cut(s)	160, 192, 222, 242, 348, 375, 432, 477
FatI	CATG	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	57
FokI	GGATG	2 cut(s)	146, 366
FspBI	CTAG	4 cut(s)	482, 560, 698, 757
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	416
Hin1II	CATG	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	494, 637
HphI	GGTGA	2 cut(s)	518, 608
Hpy166II	GTNNAC	2 cut(s)	84, 509
Hpy188I	TCNGA	4 cut(s)	493, 523, 555, 677
Hpy188III	TCNNGA	5 cut(s)	95, 119, 149, 423, 545
Hpy8I	GTNNAC	2 cut(s)	84, 509
HpyAV	CCTTC	4 cut(s)	92, 292, 320, 587
HpyCH4III	ACNGT	3 cut(s)	65, 610, 694
HpyCH4V	TGCA	3 cut(s)	230, 446, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 652
HpyF3I	CTNAG	2 cut(s)	512, 522
Hsp92II	CATG	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	57, 91, 224, 621
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	4 cut(s)	30, 69, 106, 357
LweI	GCATC	3 cut(s)	81, 433, 555
MaeI	CTAG	4 cut(s)	482, 560, 698, 757
MaeIII	GTNAC	2 cut(s)	20, 436
MalI	GATC	4 cut(s)	59, 93, 226, 623
MboI	GATC	4 cut(s)	57, 91, 224, 621
MboII	GAAGA	7 cut(s)	63, 149, 220, 260, 269, 307, 533
MflI	RGATCY	2 cut(s)	91, 224
MluCI	AATT	3 cut(s)	140, 247, 746
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	2 cut(s)	47, 163
MnlI	CCTC	9 cut(s)	5, 21, 28, 41, 124, 166, 169, 343, 507
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	366, 652
NdeII	GATC	4 cut(s)	57, 91, 224, 621
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	4 cut(s)	93, 147, 359, 415
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	494
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PshBI	ATTAAT	1 cut(s)	408
PspN4I	GGNNCC	4 cut(s)	93, 147, 359, 415
PspPI	GGNCC	1 cut(s)	414
PsuI	RGATCY	2 cut(s)	91, 224
RsaI	GTAC	2 cut(s)	200, 662
RsaNI	GTAC	2 cut(s)	199, 661
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	408
Sau3AI	GATC	4 cut(s)	57, 91, 224, 621
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	631
SetI	ASST	9 cut(s)	39, 111, 219, 303, 371, 518, 552, 598, 648
SfaNI	GCATC	3 cut(s)	81, 433, 555
SpeI	ACTAGT	1 cut(s)	481
Sse9I	AATT	3 cut(s)	140, 247, 746
SsiI	CCGC	1 cut(s)	89
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	4 cut(s)	482, 560, 698, 757
TaaI	ACNGT	3 cut(s)	65, 610, 694
TaqI	TCGA	2 cut(s)	424, 591
TasI	AATT	3 cut(s)	140, 247, 746
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	3 cut(s)	445, 504, 583
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	4 cut(s)	150, 209, 270, 447
TspRI	CASTG	3 cut(s)	445, 504, 583
VspI	ATTAAT	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	4 cut(s)	482, 560, 698, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.