Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Forward (+)

19665462 .. 19668236

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTGGAGAGGAGGCATAAGAGGAAAGAGAGGGAGAGGAGTGAGGGTAGAGATGGCGGTGTGGATGAGTCTGAAGATTCTAAGAGAGCTAGGGGTTTGGATGAGAGGAAAGAGAGGAAGCGATTTGATGACCGCCGAGTAAAGGAAGAAGAGGATGCTGGAGAATTGGAAAGGAGCACTGAAGGGAATGTGATTCACAGTGAGGTTAAGGTTAAGAAAGAAGAATTGGAGGATGATGAGGGCTCCACTACCACCCAAAATGGGGGTGCTCCGTTAGACAAAGCAGCCAATGCTACTTCAAATGCTAGCGCAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCAGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTGCAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTAAAACTTGCACAGGAGCGGGCTGCCAGGATGGGCTTTCGCCATGACCCAGAATTTGCTCCTGTTATAAACTTGTTCCCAGGACAGGTGGCAACAAATGTTGTTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTAGTCAATGTGACTAAACCAAACAACCTCAGCACTTTAAAGGTGTCTACACAACTTGCTTGGTGGAAATGGACTCACAACGCACATCATATTTTCGAAGACATGCAAGCTTTTGAAGTCAATCTCAAGGTTGCAGAGCACATTATTTCAGCTTTAGAAGAATTCAGCAATAAGAAACCTCCTCAACCTTTGTTGCTATCTTTTGACGCTAAAGAATTGAGGAACCAAGCTGCAGCTTCAACAAAGCGGTTTGAGGAAGGTATTTTTGGAAGCATCCCATTAATTTCAAACTTCCGACTAAACTTTCTAATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

311

Amino Acids

34.55

Weight (kDa)

6.19

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AccBSI	CCGCTC	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	665
AciI	CCGC	4 cut(s)	57, 133, 457, 865
AcsI	RAATTY	2 cut(s)	491, 779
AcuI	CTGAAG	2 cut(s)	93, 201
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	6 cut(s)	142, 261, 262, 523, 594, 595
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	300, 325, 734, 858, 906
AjnI	CCWGG	2 cut(s)	464, 517
AjuI	GAANNNNNNNTTGG	4 cut(s)	209, 241, 867, 899
AluBI	AGCT	6 cut(s)	89, 437, 728, 770, 848, 854
AluI	AGCT	6 cut(s)	89, 437, 728, 770, 848, 854
Alw21I	GWGCWC	3 cut(s)	179, 271, 759
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	4 cut(s)	284, 461, 848, 851
ApoI	RAATTY	2 cut(s)	491, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AseI	ATTAAT	1 cut(s)	899
AsiGI	ACCGGT	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	565
AsuHPI	GGTGA	1 cut(s)	434
AsuII	TTCGAA	1 cut(s)	714
AsuNHI	GCTAGC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	3 cut(s)	179, 271, 759
BbvCI	CCTCAGC	1 cut(s)	647
BbvI	GCAGC	4 cut(s)	296, 448, 835, 863
BccI	CCATC	5 cut(s)	47, 323, 352, 388, 463
BciT130I	CCWGG	2 cut(s)	466, 519
BfaI	CTAG	2 cut(s)	90, 306
BfmI	CTRYAG	1 cut(s)	849
BisI	GCNGC	4 cut(s)	285, 462, 849, 852
BlsI	GCNGC	4 cut(s)	286, 463, 850, 853
Bme1390I	CCNGG	2 cut(s)	466, 519
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	3 cut(s)	244, 567, 842
BmrFI	CCNGG	2 cut(s)	466, 519
BmsI	GCATC	5 cut(s)	145, 324, 376, 574, 900
BmtI	GCTAGC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	723
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	647
Bpu14I	TTCGAA	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	728
BsaJI	CCNNGG	3 cut(s)	517, 561, 589
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	6 cut(s)	142, 261, 262, 523, 594, 595
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	466, 519
BseDI	CCNNGG	3 cut(s)	517, 561, 589
BseGI	GGATG	9 cut(s)	70, 106, 160, 238, 334, 339, 367, 474, 891
BseLI	CCNNNNNNNGG	6 cut(s)	142, 261, 262, 523, 594, 595
BseMII	CTCAG	2 cut(s)	563, 661
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	3 cut(s)	25, 52, 789
BseXI	GCAGC	4 cut(s)	296, 448, 835, 863
BshFI	GGCC	1 cut(s)	566
BshTI	ACCGGT	1 cut(s)	410
BsiHKAI	GWGCWC	3 cut(s)	179, 271, 759
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	6 cut(s)	142, 261, 262, 523, 594, 595
BsnI	GGCC	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1286I	GDGCHC	4 cut(s)	179, 245, 271, 759
BspACI	CCGC	4 cut(s)	57, 133, 457, 865
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	562, 660
BspLI	GGNNCC	3 cut(s)	244, 567, 842
BspMAI	CTGCAG	1 cut(s)	853
BspOI	GCTAGC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	714
BsrBI	CCGCTC	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	517, 561, 589
BssT1I	CCWWGG	2 cut(s)	561, 589
Bst2UI	CCWGG	2 cut(s)	466, 519
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	714
BstC8I	GCNNGC	3 cut(s)	307, 459, 726
BstDEI	CTNAG	3 cut(s)	81, 549, 647
BstF5I	GGATG	9 cut(s)	70, 106, 160, 238, 334, 339, 367, 474, 891
BstHHI	GCGC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	466, 519
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	464, 517
BstSFI	CTRYAG	1 cut(s)	849
BstV1I	GCAGC	4 cut(s)	296, 448, 835, 863
BstV2I	GAAGAC	1 cut(s)	723
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	9 cut(s)	70, 106, 160, 238, 334, 339, 367, 474, 891
BtsIMutI	CAGTG	2 cut(s)	177, 205
Cac8I	GCNNGC	3 cut(s)	307, 459, 726
CfoI	GCGC	1 cut(s)	311
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	565
CseI	GACGC	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	354
CspAI	ACCGGT	1 cut(s)	410
CviAII	CATG	3 cut(s)	482, 611, 721
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	3 cut(s)	81, 549, 647
DraI	TTTAAA	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	561, 589
Eco24I	GRGCYC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	93, 201
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	464, 517
EcoT14I	CCWWGG	2 cut(s)	561, 589
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	2 cut(s)	561, 589
FaeI	CATG	3 cut(s)	485, 614, 724
FaiI	YATR	7 cut(s)	18, 432, 483, 506, 612, 708, 722
FatI	CATG	3 cut(s)	481, 610, 720
FauI	CCCGC	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	665
Fnu4HI	GCNGC	4 cut(s)	285, 462, 849, 852
FokI	GGATG	9 cut(s)	77, 113, 167, 245, 341, 346, 354, 481, 878
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	4 cut(s)	285, 462, 849, 852
FspBI	CTAG	2 cut(s)	90, 306
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	4 cut(s)	285, 462, 849, 852
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	833
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	485, 614, 724
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	4 cut(s)	68, 77, 193, 691
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	666
Hpy188I	TCNGA	4 cut(s)	73, 417, 552, 914
Hpy8I	GTNNAC	1 cut(s)	666
HpyAV	CCTTC	4 cut(s)	176, 319, 588, 869
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	7 cut(s)	337, 367, 398, 449, 724, 752, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	81, 549, 647
Hsp92II	CATG	3 cut(s)	485, 614, 724
HspAI	GCGC	1 cut(s)	309
LmnI	GCTCC	5 cut(s)	174, 248, 274, 454, 502
Lsp1109I	GCAGC	4 cut(s)	296, 448, 835, 863
LweI	GCATC	5 cut(s)	145, 324, 376, 574, 900
MaeI	CTAG	2 cut(s)	90, 306
MaeIII	GTNAC	1 cut(s)	628
MbiI	CCGCTC	1 cut(s)	457
MboII	GAAGA	7 cut(s)	86, 158, 161, 233, 566, 728, 788
MhlI	GDGCHC	4 cut(s)	179, 245, 271, 759
MluCI	AATT	8 cut(s)	164, 224, 387, 491, 779, 833, 900, 927
MlyI	GAGTC	2 cut(s)	77, 685
MseI	TTAA	5 cut(s)	207, 213, 656, 899, 934
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	2 cut(s)	466, 519
MvaI	CCWGG	2 cut(s)	466, 519
MwoI	GCNNNNNNNGC	1 cut(s)	290
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	3 cut(s)	485, 614, 724
NlaIV	GGNNCC	3 cut(s)	244, 567, 842
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	628
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	77, 193
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	286, 463, 850, 853
PleI	GAGTC	2 cut(s)	76, 685
PpsI	GAGTC	2 cut(s)	76, 685
PshBI	ATTAAT	1 cut(s)	899
PsiI	TTATAA	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	464, 517
PspGI	CCWGG	2 cut(s)	464, 517
PspN4I	GGNNCC	3 cut(s)	244, 567, 842
PspPI	GGNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	853
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	207, 213, 656, 899, 934
SatI	GCNGC	4 cut(s)	285, 462, 849, 852
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	2 cut(s)	77, 685
ScrFI	CCNGG	2 cut(s)	466, 519
SduI	GDGCHC	4 cut(s)	179, 245, 271, 759
SfaNI	GCATC	5 cut(s)	145, 324, 376, 574, 900
SfcI	CTRYAG	1 cut(s)	849
SfuI	TTCGAA	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
Sse9I	AATT	8 cut(s)	164, 224, 387, 491, 779, 833, 900, 927
SsiI	CCGC	4 cut(s)	57, 133, 457, 865
SspMI	CTAG	2 cut(s)	90, 306
StyD4I	CCNGG	2 cut(s)	464, 517
StyI	CCWWGG	2 cut(s)	561, 589
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	577, 714
TasI	AATT	8 cut(s)	164, 224, 387, 491, 779, 833, 900, 927
TatI	WGTACW	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	77, 193
Tru1I	TTAA	5 cut(s)	207, 213, 656, 899, 934
Tru9I	TTAA	5 cut(s)	207, 213, 656, 899, 934
TscAI	CASTG	2 cut(s)	184, 205
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	4 cut(s)	284, 461, 848, 851
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	2 cut(s)	447, 621
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	184, 205
VspI	ATTAAT	1 cut(s)	899
XapI	RAATTY	2 cut(s)	491, 779
XceI	RCATGY	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	665
XspI	CTAG	2 cut(s)	90, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.