Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Forward (+)

35971778 .. 35984709

Gene Structure 12932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG188900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGTGGAGAGGAGGCATAATAGGAAAGAGAGGGAGAGGAGTGAGGGTAGAGATGGCGGTGTGGATGAGTCTGAAGATTCTAAGAGAGCTAGGGGTTTGGATGAGAGGAAAGAGAGGAAGCGATTTGATGACCGCCGAGTAAAGGAAGAAGAGGATGCTGGAGAATTGGAAAGGAGCACTGAAGGGAATGTGATTCACAGTGAGGTTAAGGTTAAGAAAGAAGAATTGGAGGATGATGAGGGCTCCACTACCACCCAAAATGGGGGTGCTCCGGTGTGTAATGGTGCCAGTCTGGATTCTACTATGGAATCAAGGGTTGTGCCTGAGACCTCTTCCCCCCTAGTCATCCCCATCCTACCAAGTACAGATGGGACATCTTCAACTGCTGGAAGAAGTGGAAATCCGCCTCCTGTTGATTTAGATAAAATTAAGAATCTTCTGGCGAAACGTAAGGAATTGGCTGACAAGCTGAACAAAACAAAGTTAGACAAAGCAGCCAATGCTAGTTCAAATGCTAGCGCAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCTGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTGCAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTAAAACTTGCACAGGAGCGGGCTGCCAGGATGGGCTTTCGCCATGACCCAGAATTTGCTCCTGTTATAAACTTGTTCCCAGGACAGGTGGCAACAGATGTTGTTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTAGTCAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

280

Amino Acids

30.26

Weight (kDa)

5.72

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	284
AccBSI	CCGCTC	1 cut(s)	667
AciI	CCGC	4 cut(s)	57, 133, 404, 667
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	2 cut(s)	93, 201
AfaI	GTAC	2 cut(s)	364, 565
AfiI	CCNNNNNNNGG	6 cut(s)	142, 261, 262, 733, 804, 805
AgeI	ACCGGT	1 cut(s)	620
AgsI	TTSAA	3 cut(s)	381, 510, 535
AjnI	CCWGG	2 cut(s)	674, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	3 cut(s)	89, 469, 647
AluI	AGCT	3 cut(s)	89, 469, 647
Alw21I	GWGCWC	2 cut(s)	179, 271
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	774
ApeKI	GCWGC	2 cut(s)	494, 671
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AsiGI	ACCGGT	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	775
AsuHPI	GGTGA	1 cut(s)	644
AsuNHI	GCTAGC	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	179, 271
BbvI	GCAGC	2 cut(s)	506, 658
BccI	CCATC	7 cut(s)	47, 359, 362, 533, 562, 598, 673
BciT130I	CCWGG	2 cut(s)	676, 729
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	4 cut(s)	90, 341, 504, 516
BisI	GCNGC	2 cut(s)	495, 672
BlsI	GCNGC	2 cut(s)	496, 673
Bme1390I	CCNGG	2 cut(s)	676, 729
BmgT120I	GGNCC	1 cut(s)	775
BmiI	GGNNCC	3 cut(s)	244, 286, 777
BmrFI	CCNGG	2 cut(s)	676, 729
BmsI	GCATC	4 cut(s)	145, 534, 586, 784
BmtI	GCTAGC	1 cut(s)	519
BpmI	CTGGAG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	727, 771, 799
BsaWI	WCCGGW	2 cut(s)	271, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	6 cut(s)	142, 261, 262, 733, 804, 805
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	2 cut(s)	288, 634
BseBI	CCWGG	2 cut(s)	676, 729
BseDI	CCNNGG	3 cut(s)	727, 771, 799
BseLI	CCNNNNNNNGG	6 cut(s)	142, 261, 262, 733, 804, 805
BseMII	CTCAG	2 cut(s)	315, 773
BseNI	ACTGG	2 cut(s)	288, 634
BseRI	GAGGAG	2 cut(s)	25, 52
BseXI	GCAGC	2 cut(s)	506, 658
BshFI	GGCC	1 cut(s)	776
BshNI	GGYRCC	1 cut(s)	284
BshTI	ACCGGT	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	179, 271
BsiSI	CCGG	2 cut(s)	272, 621
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	6 cut(s)	142, 261, 262, 733, 804, 805
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	776
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	3 cut(s)	179, 245, 271
BspACI	CCGC	4 cut(s)	57, 133, 404, 667
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	2 cut(s)	316, 772
BspLI	GGNNCC	3 cut(s)	244, 286, 777
BspOI	GCTAGC	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	667
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	288, 634
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	3 cut(s)	727, 771, 799
BssT1I	CCWWGG	2 cut(s)	771, 799
Bst2UI	CCWGG	2 cut(s)	676, 729
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	2 cut(s)	144, 337
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	517, 669
BstDEI	CTNAG	3 cut(s)	81, 324, 759
BstHHI	GCGC	1 cut(s)	521
BstMAI	GTCTC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	2 cut(s)	676, 729
BstSCI	CCNGG	2 cut(s)	674, 727
BstV1I	GCAGC	2 cut(s)	506, 658
BsuRI	GGCC	1 cut(s)	776
BtsIMutI	CAGTG	2 cut(s)	177, 205
Cac8I	GCNNGC	2 cut(s)	517, 669
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	1 cut(s)	775
Csp6I	GTAC	2 cut(s)	363, 564
CspAI	ACCGGT	1 cut(s)	620
CviAII	CATG	2 cut(s)	692, 821
CviQI	GTAC	2 cut(s)	363, 564
DdeI	CTNAG	3 cut(s)	81, 324, 759
Eam1104I	CTCTTC	2 cut(s)	144, 337
EarI	CTCTTC	2 cut(s)	144, 337
EciI	GGCGGA	1 cut(s)	393
Eco130I	CCWWGG	2 cut(s)	771, 799
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	320
Eco57I	CTGAAG	2 cut(s)	93, 201
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRII	CCWGG	2 cut(s)	674, 727
EcoT14I	CCWWGG	2 cut(s)	771, 799
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	2 cut(s)	771, 799
FaeI	CATG	2 cut(s)	695, 824
FaiI	YATR	6 cut(s)	18, 305, 642, 693, 716, 822
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	2 cut(s)	691, 820
FauI	CCCGC	1 cut(s)	660
Fnu4HI	GCNGC	2 cut(s)	495, 672
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	495, 672
FspBI	CTAG	4 cut(s)	90, 341, 504, 516
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	2 cut(s)	495, 672
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	776
HapII	CCGG	2 cut(s)	272, 621
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	2 cut(s)	695, 824
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	6 cut(s)	68, 77, 193, 296, 308, 433
HpaII	CCGG	2 cut(s)	272, 621
HphI	GGTGA	1 cut(s)	644
Hpy188I	TCNGA	3 cut(s)	73, 627, 762
Hpy188III	TCNNGA	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	176, 529, 798
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	5 cut(s)	547, 560, 577, 608, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	81, 324, 759
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	2 cut(s)	695, 824
HspAI	GCGC	1 cut(s)	519
LmnI	GCTCC	5 cut(s)	174, 248, 274, 664, 712
Lsp1109I	GCAGC	2 cut(s)	506, 658
LweI	GCATC	4 cut(s)	145, 534, 586, 784
MaeI	CTAG	4 cut(s)	90, 341, 504, 516
MaeII	ACGT	1 cut(s)	448
MbiI	CCGCTC	1 cut(s)	667
MboII	GAAGA	9 cut(s)	86, 158, 161, 233, 324, 369, 402, 428, 776
MhlI	GDGCHC	3 cut(s)	179, 245, 271
MluCI	AATT	6 cut(s)	164, 224, 426, 455, 597, 701
MlyI	GAGTC	1 cut(s)	77
MseI	TTAA	3 cut(s)	207, 213, 429
MslI	CAYNNNNRTG	1 cut(s)	825
MspI	CCGG	2 cut(s)	272, 621
MspR9I	CCNGG	2 cut(s)	676, 729
MvaI	CCWGG	2 cut(s)	676, 729
MwoI	GCNNNNNNNGC	1 cut(s)	500
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	2 cut(s)	695, 824
NlaIV	GGNNCC	3 cut(s)	244, 286, 777
NmeAIII	GCCGAG	1 cut(s)	161
PfeI	GAWTC	5 cut(s)	77, 193, 296, 308, 433
PinAI	ACCGGT	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	496, 673
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PsiI	TTATAA	1 cut(s)	716
Psp6I	CCWGG	2 cut(s)	674, 727
PspGI	CCWGG	2 cut(s)	674, 727
PspN4I	GGNNCC	3 cut(s)	244, 286, 777
PspPI	GGNCC	1 cut(s)	775
RsaI	GTAC	2 cut(s)	364, 565
RsaNI	GTAC	2 cut(s)	363, 564
RseI	CAYNNNNRTG	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	207, 213, 429
SatI	GCNGC	2 cut(s)	495, 672
Sau96I	GGNCC	1 cut(s)	775
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	676, 729
SduI	GDGCHC	3 cut(s)	179, 245, 271
SetI	ASST	9 cut(s)	91, 207, 213, 332, 451, 471, 553, 649, 738
SfaNI	GCATC	4 cut(s)	145, 534, 586, 784
SmiMI	CAYNNNNRTG	1 cut(s)	825
Sse9I	AATT	6 cut(s)	164, 224, 426, 455, 597, 701
SsiI	CCGC	4 cut(s)	57, 133, 404, 667
SspMI	CTAG	4 cut(s)	90, 341, 504, 516
StyD4I	CCNGG	2 cut(s)	674, 727
StyI	CCWWGG	2 cut(s)	771, 799
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	1 cut(s)	787
TasI	AATT	6 cut(s)	164, 224, 426, 455, 597, 701
TatI	WGTACW	2 cut(s)	362, 563
TfiI	GAWTC	5 cut(s)	77, 193, 296, 308, 433
Tru1I	TTAA	3 cut(s)	207, 213, 429
Tru9I	TTAA	3 cut(s)	207, 213, 429
TscAI	CASTG	2 cut(s)	184, 205
TseI	GCWGC	2 cut(s)	494, 671
TspDTI	ATGAA	2 cut(s)	657, 831
TspRI	CASTG	2 cut(s)	184, 205
XapI	RAATTY	1 cut(s)	701
XspI	CTAG	4 cut(s)	90, 341, 504, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.