Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Forward (+)

3403666 .. 3406114

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAATTTGTTCACTAAAGCTGCAATTTCAGATGGACAAGGGTATGCGGCTTCCGGTGAGGTTAAGAATAAGAAAGAAGAACTGGAGGATGATGAGGGCTTCACTACCGCCCGAGACGGGGGTGCTCCGGTGGGTAATGGTACCAGTCTGGATTCTACTATGGCATCAAGGATTCAGCCTGAGGCCTCATTCCCCCCTAGTCATCCCCATCCTACCAAGGTATATTCGATTTCTACCACAAATGATAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCCTGGAAAATCTAGTACAGATGGGACATCTTCAACTGCTGAAGGAAGTGGGAATCTGCCTTCTGGTGATATAGATAAAATTAAGAATCTTATGGCGAAACATAAGGAATTGACTGAGAAGCTGAACAAAAAGGGGATCAACAAAGCAGCCATTGCTAGTTCAGATGCCAGCACAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCTGCAAGACAGGTGGCAACGGAAATTGTTCCCTCTCAGAAGCCAACCAAGGCCCCAGTTCTTCAACTTGATGCCCTTGGAAGGGAAATAGATGAACACGGAAATGTAGTCAATGTGATGAAACCAAACAACCTCAGCACTTTAAAGGTCAACATTAACAAGCAGAAAAAAGACGCGTTTCAAATTCTTAAACCCGAAGTGGATATGAATCCTGAATCAAATCCTTTCTTTGACCCGAAGATGGGCATTAATATGACGAAGATTTTGAGGCCAAAGAGGATGAATTTCCAGTTTGTAGAGGAAGGGAAGTGGTCAAAAGAAGCTGAACATATGAAGTTGAAGATGAAATTTGGCGAATTACAAGCTAAAGAGCATAGGACGAAGCAGGCTCAGTTGGCAAAAGCAAAGGCTGATACAAATCCAAATTTGATAGAGGTATCAGAAAGAGTCAGCACCAAAGATAAACCGAAGGATCCAACTCCGGAAGTTGAGTGGTGCTATGCTGATTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

335

Amino Acids

36.53

Weight (kDa)

8.34

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP3	PF08572	237 - 328	1.5e-09	pre-mRNA processing factor 3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	140
AccII	CGCG	1 cut(s)	665
AccIII	TCCGGA	1 cut(s)	970
AciI	CCGC	2 cut(s)	47, 108
AclWI	GGATC	3 cut(s)	425, 956, 969
AcsI	RAATTY	5 cut(s)	4, 672, 772, 836, 913
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	2 cut(s)	142, 298
AfiI	CCNNNNNNNGG	6 cut(s)	117, 118, 570, 571, 730, 731
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	6 cut(s)	315, 469, 554, 671, 829, 1001
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	20, 403, 812, 854
AluI	AGCT	4 cut(s)	20, 403, 812, 854
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	3 cut(s)	425, 956, 969
Ama87I	CYCGRG	1 cut(s)	111
Aor13HI	TCCGGA	1 cut(s)	970
AoxI	GGCC	3 cut(s)	183, 540, 758
ApeKI	GCWGC	2 cut(s)	20, 428
ApoI	RAATTY	5 cut(s)	4, 672, 772, 836, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	736, 768
AseI	ATTAAT	1 cut(s)	738
Asp700I	GAANNNNTTC	2 cut(s)	8, 516
Asp718I	GGTACC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	68, 359
AvaI	CYCGRG	1 cut(s)	111
AxyI	CCTNAGG	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	961
BanI	GGYRCC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	7, 440
BccI	CCATC	6 cut(s)	26, 216, 296, 467, 496, 724
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	3 cut(s)	198, 294, 438
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	3 cut(s)	21, 48, 429
BlsI	GCNGC	3 cut(s)	22, 49, 430
Bme1390I	CCNGG	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	4 cut(s)	142, 282, 543, 963
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	4 cut(s)	173, 436, 468, 550
BmuI	ACTGGG	1 cut(s)	539
BpmI	CTGGAG	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	623
BsaBI	GATNNNNATC	2 cut(s)	696, 906
BsaJI	CCNNGG	3 cut(s)	216, 537, 565
BsaWI	WCCGGW	3 cut(s)	53, 127, 970
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 118, 570, 571, 730, 731
Bse1I	ACTGG	4 cut(s)	87, 144, 545, 778
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	2 cut(s)	696, 906
BseAI	TCCGGA	1 cut(s)	970
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	216, 537, 565
BseGI	GGATG	6 cut(s)	94, 202, 208, 478, 483, 774
BseJI	GATNNNNATC	2 cut(s)	696, 906
BseLI	CCNNNNNNNGG	6 cut(s)	117, 118, 570, 571, 730, 731
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	5 cut(s)	171, 387, 539, 637, 893
BseNI	ACTGG	4 cut(s)	87, 144, 545, 778
BseXI	GCAGC	2 cut(s)	7, 440
Bsh1236I	CGCG	1 cut(s)	665
BshFI	GGCC	3 cut(s)	185, 542, 760
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	54, 128, 971
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	6 cut(s)	117, 118, 570, 571, 730, 731
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	185, 542, 760
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	970
Bsp143I	GATC	3 cut(s)	269, 417, 961
BspACI	CCGC	2 cut(s)	47, 108
BspANI	GGCC	3 cut(s)	185, 542, 760
BspCNI	CTCAG	5 cut(s)	172, 388, 538, 636, 892
BspEI	TCCGGA	1 cut(s)	970
BspFNI	CGCG	1 cut(s)	665
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	4 cut(s)	142, 282, 543, 963
BspPI	GGATC	3 cut(s)	425, 956, 969
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	4 cut(s)	87, 144, 545, 778
BssECI	CCNNGG	3 cut(s)	216, 537, 565
BssMI	GATC	3 cut(s)	269, 417, 961
BssT1I	CCWWGG	3 cut(s)	216, 537, 565
Bst2UI	CCWGG	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	451, 876
BstDEI	CTNAG	5 cut(s)	180, 396, 525, 623, 879
BstF5I	GGATG	6 cut(s)	94, 202, 208, 478, 483, 774
BstFNI	CGCG	1 cut(s)	665
BstKTI	GATC	3 cut(s)	272, 420, 964
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	269, 417, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 884
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	7, 440
BstX2I	RGATCY	2 cut(s)	269, 961
BstYI	RGATCY	2 cut(s)	269, 961
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	185, 542, 760
BtsCI	GGATG	6 cut(s)	94, 202, 208, 478, 483, 774
Cac8I	GCNNGC	2 cut(s)	451, 876
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	541
CseI	GACGC	1 cut(s)	671
Csp6I	GTAC	2 cut(s)	141, 297
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	2 cut(s)	141, 297
DdeI	CTNAG	5 cut(s)	180, 396, 525, 623, 879
DpnI	GATC	3 cut(s)	271, 419, 963
DpnII	GATC	3 cut(s)	269, 417, 961
DraI	TTTAAA	1 cut(s)	633
Eco130I	CCWWGG	3 cut(s)	216, 537, 565
Eco147I	AGGCCT	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	3 cut(s)	216, 537, 565
ErhI	CCWWGG	3 cut(s)	216, 537, 565
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	1 cut(s)	274
FauNDI	CATATG	1 cut(s)	819
Fnu4HI	GCNGC	3 cut(s)	21, 48, 429
FokI	GGATG	6 cut(s)	101, 189, 195, 485, 490, 781
Fsp4HI	GCNGC	3 cut(s)	21, 48, 429
FspBI	CTAG	3 cut(s)	198, 294, 438
GluI	GCNGC	3 cut(s)	21, 48, 429
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	185, 542, 760
HapII	CCGG	3 cut(s)	54, 128, 971
HgaI	GACGC	1 cut(s)	671
Hin1II	CATG	1 cut(s)	278
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	7 cut(s)	152, 172, 334, 367, 697, 704, 936
HpaII	CCGG	3 cut(s)	54, 128, 971
HphI	GGTGA	2 cut(s)	68, 359
Hpy166II	GTNNAC	2 cut(s)	12, 640
Hpy188I	TCNGA	4 cut(s)	31, 445, 528, 931
Hpy188III	TCNNGA	4 cut(s)	149, 275, 701, 971
Hpy8I	GTNNAC	2 cut(s)	12, 640
HpyAV	CCTTC	6 cut(s)	317, 351, 463, 564, 785, 952
HpyCH4V	TGCA	3 cut(s)	23, 481, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 884
HpyF3I	CTNAG	5 cut(s)	180, 396, 525, 623, 879
Hsp92II	CATG	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	970
KpnI	GGTACC	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	269, 417, 961
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	7, 440
LweI	GCATC	4 cut(s)	173, 436, 468, 550
MaeI	CTAG	3 cut(s)	198, 294, 438
MalI	GATC	3 cut(s)	271, 419, 963
MboI	GATC	3 cut(s)	269, 417, 961
MboII	GAAGA	6 cut(s)	89, 303, 542, 739, 760, 841
MflI	RGATCY	2 cut(s)	269, 961
MhlI	GDGCHC	1 cut(s)	127
MluI	ACGCGT	1 cut(s)	663
MlyI	GAGTC	1 cut(s)	945
MmeI	TCCRAC	1 cut(s)	989
MroI	TCCGGA	1 cut(s)	970
MroXI	GAANNNNTTC	2 cut(s)	8, 516
MseI	TTAA	6 cut(s)	63, 363, 632, 645, 678, 738
MslI	CAYNNNNRTG	2 cut(s)	591, 740
MspI	CCGG	3 cut(s)	54, 128, 971
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	2 cut(s)	434, 884
NdeI	CATATG	1 cut(s)	819
NdeII	GATC	3 cut(s)	269, 417, 961
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	4 cut(s)	142, 282, 543, 963
PagI	TCATGA	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	185
PdmI	GAANNNNTTC	2 cut(s)	8, 516
PfeI	GAWTC	6 cut(s)	152, 172, 334, 367, 697, 704
PfoI	TCCNGGA	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	22, 49, 430
PleI	GAGTC	1 cut(s)	944
PpsI	GAGTC	1 cut(s)	944
PshBI	ATTAAT	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	4 cut(s)	142, 282, 543, 963
PspPI	GGNCC	1 cut(s)	541
PsuI	RGATCY	2 cut(s)	269, 961
RsaI	GTAC	2 cut(s)	142, 298
RsaNI	GTAC	2 cut(s)	141, 297
RseI	CAYNNNNRTG	2 cut(s)	591, 740
SaqAI	TTAA	6 cut(s)	63, 363, 632, 645, 678, 738
SatI	GCNGC	3 cut(s)	21, 48, 429
Sau3AI	GATC	3 cut(s)	269, 417, 961
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	1 cut(s)	945
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	4 cut(s)	173, 436, 468, 550
SmiMI	CAYNNNNRTG	2 cut(s)	591, 740
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	47, 108
SspMI	CTAG	3 cut(s)	198, 294, 438
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	3 cut(s)	216, 537, 565
TaqI	TCGA	1 cut(s)	227
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	6 cut(s)	152, 172, 334, 367, 697, 704
Tru1I	TTAA	6 cut(s)	63, 363, 632, 645, 678, 738
Tru9I	TTAA	6 cut(s)	63, 363, 632, 645, 678, 738
TseI	GCWGC	2 cut(s)	20, 428
TspDTI	ATGAA	7 cut(s)	17, 597, 623, 710, 785, 836, 848
TspGWI	ACGGA	2 cut(s)	524, 603
VspI	ATTAAT	1 cut(s)	738
XapI	RAATTY	5 cut(s)	4, 672, 772, 836, 913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XmnI	GAANNNNTTC	2 cut(s)	8, 516
XspI	CTAG	3 cut(s)	198, 294, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.