Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Reverse (-)

20246760 .. 20250388

Gene Structure 3629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17720.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGGAGAAAGACAAGTCGAGCAAACGCGACCGCAGAGATCGAGACAGAGACTACGACAAACATCGCAGCCGTGATGCCGACGAAAAGCGATCGTCAAAGGACTCCAATTACCGCCACCACCACCACCGATCGGACCGCGATTCCAAGCGCGAGCGCTCTCGCGAGCCCCGCGACCACAAATCTCGCCGCGAACGGTCGCGCGAGCCGCGCGACGACGGCCGGGATGTCTCGCGCGACCACCGTGAGCGGTCCTGCGAGCCAAGGGACGAGAGGGAAGGGAGCAGAGAGAGGTCCAGGCATCGGGAAGCGAAGCGCGAGAGGTCAGAGGAGCGAGAAGAATCGAAGCGTAAGAGGAAAGAAAGGGAGAGGAGTGAGGGTCGAGATGGCGAGGGTGATGATTTAGAAGATAAGAAGAGGTCTAGGGTTTCGGAGGGGGAGAGGAAAGAGAGGAAGCGATTCGAGGAAGATGGTCACGAAGTGAATGGTGGTCAGAAAAAGAGTAGGAGGTTTGGTGACCGCCGAGTAAAGGAGGAAGAGGGCAGAGAGAATGGCGAAGTTGTTGAACGGAGAACTGAATTGAATGTGAATGCGAGCGAGGTTAATGTTAAGAAAGAAGAAGTTGGGGATGATCATATTGGCAATTTCCAGAGCGTGGCCGCCACCCCAAATGGGATTGGTCGGGTGGGTAATGGCGCTGCTATGGAACCTACTATGACATCTAGGATTGTGCCTGAGACCTCTTTCGCTCCCATTCATCCCCTTCCTACCAAGGTATCTTCAATTCCTACAACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGAACATCTTCAACTGCTGGGAAAAGTGCGAATCTGTCTCTTGGTGATGTTGAAAAAATCAAGAGAACTTTACAGAAGCAGAAGGAATTGACTGAGAAGCTGAAGAAGCTTAACCAGGGTTATATCTTAATTACGTATATTTCTTTGGACAAACGCACTACCACTACTCTTATCATACAGTTGAAGAAGGAAGGCAATTTAAGCAAAGATGCTAGCCAGAACTTGGAATTGAAGGAGGGACTGAAACCACCAGCTACTACTGCTGGGTTGCTACACGCACCGACCCCATCAACAGCTGTTACTACAGCTGCTTCTGTGGCAACATTTGACTCGTCTGCCCTACCCATATCTGCAGCAGCCGTTCCCAACTTTGAAGCTGTAAAACGTGCACAAGCACTTGCTGCTCAGATGGGGTTCCGTCAGGACCCTGATTTTTCTCCTCTCATAAACTCATTTCCAGGACAGGTGGCTACTGATGTTGCTGCCCCGCAGAAGCCTACTAAGGCCCCTGTTCTTCGTCTTGATGCTCTTGGAAGGGAAATAGATGAACATGGAAACTTAGTGAATGTGACGAAACCAAACAACCTCAGTACCCTAAAGGTCAACATTAACAAACAGAAGAAAGAAGCATTCCAGATTCTAAAACCTGAATTGGATGTGGATCCTGAAGAGAATCCTCATTTTGATCCGGACGTGGGCATCAGTAAAAAATTTTTGAGGCCAAAGAGGATGGGTTTCGCGTTTGTAGAGGAAGGAAAATGGACAAGAGATGCTGAGCTTATAAAATTAAAGAGTAAATTTGGAGAAGCACAAGCCAAAGAGCAAAGAGCAAAGCAGCAACAGTTTGCAAAGGCAAAGGCAGCGCCAGATATTAATCCAAATTTGATAGAAGTAGGGGAGAGAGTTATCACCAAAGAAAAACCAAAGATCGATCCAATTCCTGAAATTGAGTGGTGGGATGTGCCACTGTTGCACTCTGGTACTTATAAGGAAGTTGTTGATGGTACAGTAGCTGAAGATAAATTAAAGATGGAGAAAATCACAATCTATATTGAGCATCCTCAACCTATTGAGCCCCCTACTGAGCCAGCTCCTCCACCGCCTCAACCACTGAAGCTGACCAAGAAGGAACAGAAAAAACTACGAACACAGAAACGTCTGGCCAGAGAGAAAGATAGGCAGGAGATGATTAGACAAGGCCTGCTTGAGCCCCCAAAGCCAAAAGTTAAAATGAGTAATTTGATGAAGGTTCTTGGCTCTGAAGCAACCCAAGATCGAACCAGGCTAGAAAAGGAGATCCGGAGTGCAGCTGCTGAACGTGAACAAGCTCATGTAGACAGGAATATAGCACGGAAGCTCACTCCTGCCGAGCGTCGTGAGAAGAAAGAAAGGAAGCTTTTTGATGACCCTAATAACGTGGAGACCATCGTCTCAGTTTACCGGATCAACGAGCTGTCACATCCAAAGGCCCGCTTCAAGATAGATGTTAATGCGCGAGAGAACCGGCTGAATGGATCTTGTGTGATATCAGATGGTATTAATGTTGTGGTTGTTGAAGGTGGAAGCAAGTCTATCAAGAGGTATGCAAAGGTTATGCTTAGGCGCATAAACTGGGCTGAGGCAGTAAAAGAAGAGGAAGAAGACGATGATGCTGACGATGACAAGCCTCCTAACAAGTGCGTGTTAGTATGGCAAGGAAGTGTTGCAAGACGGAGCTTCAATAGGTTTTCTGTTCATGAATGCATGACTGAAGCTGCTGCCCGGAAGGTTTATGCTGATGCTGGCGTTGCTCATTACTGGGATCTTGCGGTCAACTTTCAAGATGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

896

Amino Acids

101.8

Weight (kDa)

9.37

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1637, 1842
AccB7I	CCANNNNNTGG	2 cut(s)	652, 1078
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	2190
AccIII	TCCGGA	2 cut(s)	1543, 2154
AclWI	GGATC	8 cut(s)	1511, 1524, 1535, 1781, 2146, 2306, 2377, 2664
AcoI	YGGCCR	3 cut(s)	217, 654, 2016
AcsI	RAATTY	3 cut(s)	1565, 1652, 1735
AcuI	CTGAAG	6 cut(s)	977, 1542, 1890, 1988, 2136, 2625
AdeI	CACNNNGTG	1 cut(s)	478
AfaI	GTAC	4 cut(s)	850, 1447, 1837, 1861
AfeI	AGCGCT	1 cut(s)	155
AfiI	CCNNNNNNNGG	7 cut(s)	130, 300, 526, 652, 669, 1078, 1550
AjiI	CACGTC	1 cut(s)	1549
AjnI	CCWGG	4 cut(s)	293, 969, 1312, 2135
Alw21I	GWGCWC	1 cut(s)	1246
Alw26I	GTCTC	7 cut(s)	36, 42, 232, 728, 897, 2270, 2290
Alw44I	GTGCAC	1 cut(s)	1242
AlwI	GGATC	8 cut(s)	1511, 1524, 1535, 1781, 2146, 2306, 2377, 2664
AlwNI	CAGNNNCTG	2 cut(s)	1868, 2168
Aor13HI	TCCGGA	2 cut(s)	1543, 2154
Aor51HI	AGCGCT	1 cut(s)	155
AoxI	GGCC	7 cut(s)	217, 654, 1359, 1574, 2016, 2053, 2322
ApaLI	GTGCAC	1 cut(s)	1242
ApoI	RAATTY	3 cut(s)	1565, 1652, 1735
AseI	ATTAAT	2 cut(s)	1728, 2394
Asp700I	GAANNNNTTC	2 cut(s)	455, 862
AspS9I	GGNCC	6 cut(s)	133, 249, 291, 1279, 1360, 2323
AsuC2I	CCSGG	2 cut(s)	221, 2617
AsuHPI	GGTGA	4 cut(s)	404, 524, 911, 1756
AsuNHI	GCTAGC	1 cut(s)	1067
AvaII	GGWCC	4 cut(s)	133, 249, 291, 1279
BaeGI	GKGCMC	1 cut(s)	1246
BaeI	ACNNNNGTAYC	4 cut(s)	756, 789, 1429, 1462
BalI	TGGCCA	1 cut(s)	2018
BamHI	GGATCC	1 cut(s)	1516
BanII	GRGCYC	3 cut(s)	168, 1932, 2067
BbsI	GAAGAC	1 cut(s)	2502
Bbv12I	GWGCWC	1 cut(s)	1246
BbvCI	CCTCAGC	1 cut(s)	2472
BceAI	ACGGC	3 cut(s)	54, 232, 1199
BciT130I	CCWGG	4 cut(s)	295, 971, 1314, 2137
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	221, 2617
BcoDI	GTCTC	7 cut(s)	36, 42, 232, 728, 897, 2270, 2290
BfaI	CTAG	5 cut(s)	420, 720, 846, 1068, 2141
BfmI	CTRYAG	2 cut(s)	1158, 1206
BfoI	RGCGCY	3 cut(s)	157, 696, 1721
BglII	AGATCT	1 cut(s)	821
BlpI	GCTNAGC	1 cut(s)	1629
Bme1390I	CCNGG	6 cut(s)	221, 295, 971, 1314, 2137, 2617
Bme18I	GGWCC	4 cut(s)	133, 249, 291, 1279
BmgBI	CACGTC	1 cut(s)	1549
BmgT120I	GGNCC	6 cut(s)	133, 249, 291, 1279, 1360, 2323
BmiI	GGNNCC	5 cut(s)	705, 1271, 1281, 1362, 1518
BmrFI	CCNGG	6 cut(s)	221, 295, 971, 1314, 2137, 2617
BmrI	ACTGGG	2 cut(s)	2476, 2662
BmsI	GCATC	9 cut(s)	64, 307, 1054, 1369, 1563, 1615, 1921, 2494, 2623
BmtI	GCTAGC	1 cut(s)	1071
BmuI	ACTGGG	2 cut(s)	2476, 2662
BoxI	GACNNNNGTC	1 cut(s)	2282
BpiI	GAAGAC	1 cut(s)	2502
Bpu10I	CCTNAGC	2 cut(s)	2453, 2472
Bpu1102I	GCTNAGC	1 cut(s)	1629
BpuEI	CTTGAG	1 cut(s)	2081
BpuMI	CCSGG	2 cut(s)	221, 2617
Bsa29I	ATCGAT	1 cut(s)	1785
BsaAI	YACGTR	1 cut(s)	990
BsaBI	GATNNNNATC	2 cut(s)	1515, 1728
BsaI	GGTCTC	2 cut(s)	728, 2270
BsaJI	CCNNGG	3 cut(s)	260, 768, 970
BsaWI	WCCGGW	3 cut(s)	1543, 2154, 2295
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 391, 496, 526
Bsc4I	CCNNNNNNNGG	7 cut(s)	130, 300, 526, 652, 669, 1078, 1550
Bse118I	RCCGGY	1 cut(s)	2358
Bse1I	ACTGG	2 cut(s)	2471, 2657
Bse8I	GATNNNNATC	2 cut(s)	1515, 1728
BseAI	TCCGGA	2 cut(s)	1543, 2154
BseBI	CCWGG	4 cut(s)	295, 971, 1314, 2137
BseCI	ATCGAT	1 cut(s)	1785
BseDI	CCNNGG	3 cut(s)	260, 768, 970
BseGI	GGATG	8 cut(s)	229, 631, 754, 1516, 1590, 1819, 1912, 2314
BseJI	GATNNNNATC	2 cut(s)	1515, 1728
BseLI	CCNNNNNNNGG	7 cut(s)	130, 300, 526, 652, 669, 1078, 1550
BseMII	CTCAG	8 cut(s)	723, 939, 1274, 1456, 1620, 1929, 2301, 2463
BseNI	ACTGG	2 cut(s)	2471, 2657
BseRI	GAGGAG	4 cut(s)	341, 382, 1284, 1938
BseSI	GKGCMC	1 cut(s)	1246
BseX3I	CGGCCG	1 cut(s)	217
BseYI	CCCAGC	2 cut(s)	872, 1118
BsgI	GTGCAG	1 cut(s)	2181
Bsh1285I	CGRYCG	5 cut(s)	31, 92, 131, 197, 220
BshFI	GGCC	7 cut(s)	219, 656, 1361, 1576, 2018, 2055, 2324
BshVI	ATCGAT	1 cut(s)	1785
BsiEI	CGRYCG	5 cut(s)	31, 92, 131, 197, 220
BsiHKAI	GWGCWC	1 cut(s)	1246
BsiSI	CCGG	6 cut(s)	220, 1544, 2155, 2296, 2359, 2617
BslFI	GGGAC	2 cut(s)	278, 1107
BslI	CCNNNNNNNGG	7 cut(s)	130, 300, 526, 652, 669, 1078, 1550
BsmAI	GTCTC	7 cut(s)	36, 42, 232, 728, 897, 2270, 2290
BsmBI	CGTCTC	1 cut(s)	2290
BsmFI	GGGAC	2 cut(s)	278, 1107
BsmI	GAATGC	3 cut(s)	592, 1484, 2600
BsnI	GGCC	7 cut(s)	219, 656, 1361, 1576, 2018, 2055, 2324
Bso31I	GGTCTC	2 cut(s)	728, 2270
Bsp1286I	GDGCHC	4 cut(s)	168, 1246, 1932, 2067
Bsp13I	TCCGGA	2 cut(s)	1543, 2154
Bsp1720I	GCTNAGC	1 cut(s)	1629
Bsp68I	TCGCGA	1 cut(s)	162
BspANI	GGCC	7 cut(s)	219, 656, 1361, 1576, 2018, 2055, 2324
BspCNI	CTCAG	8 cut(s)	724, 940, 1273, 1455, 1621, 1930, 2300, 2464
BspDI	ATCGAT	1 cut(s)	1785
BspEI	TCCGGA	2 cut(s)	1543, 2154
BspHI	TCATGA	2 cut(s)	826, 2590
BspLI	GGNNCC	5 cut(s)	705, 1271, 1281, 1362, 1518
BspMAI	CTGCAG	1 cut(s)	1210
BspOI	GCTAGC	1 cut(s)	1071
BspPI	GGATC	8 cut(s)	1511, 1524, 1535, 1781, 2146, 2306, 2377, 2664
BspTNI	GGTCTC	2 cut(s)	728, 2270
BsrBI	CCGCTC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	2358
BsrI	ACTGG	2 cut(s)	2471, 2657
BssAI	RCCGGY	1 cut(s)	2358
BssECI	CCNNGG	3 cut(s)	260, 768, 970
BssT1I	CCWWGG	2 cut(s)	260, 768
Bst2UI	CCWGG	4 cut(s)	295, 971, 1314, 2137
Bst4CI	ACNGT	6 cut(s)	195, 242, 1035, 1698, 1824, 1864
Bst6I	CTCTTC	4 cut(s)	407, 528, 1518, 2481
BstAPI	GCANNNNNTGC	1 cut(s)	1256
BstBAI	YACGTR	1 cut(s)	990
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	8 cut(s)	229, 631, 754, 1516, 1590, 1819, 1912, 2314
BstH2I	RGCGCY	3 cut(s)	157, 696, 1721
BstMAI	GTCTC	7 cut(s)	36, 42, 232, 728, 897, 2270, 2290
BstMCI	CGRYCG	5 cut(s)	31, 92, 131, 197, 220
BstNI	CCWGG	4 cut(s)	295, 971, 1314, 2137
BstPAI	GACNNNNGTC	1 cut(s)	2282
BstPI	GGTNACC	1 cut(s)	512
BstSCI	CCNGG	6 cut(s)	219, 293, 969, 1312, 2135, 2615
BstSFI	CTRYAG	2 cut(s)	1158, 1206
BstSLI	GKGCMC	1 cut(s)	1246
BstSNI	TACGTA	1 cut(s)	990
BstV2I	GAAGAC	1 cut(s)	2502
BstX2I	RGATCY	5 cut(s)	821, 1516, 2151, 2369, 2656
BstYI	RGATCY	5 cut(s)	821, 1516, 2151, 2369, 2656
BstZI	CGGCCG	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	1785
BsuRI	GGCC	7 cut(s)	219, 656, 1361, 1576, 2018, 2055, 2324
BsuTUI	ATCGAT	1 cut(s)	1785
BtgZI	GCGATG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	1549
BtsCI	GGATG	8 cut(s)	229, 631, 754, 1516, 1590, 1819, 1912, 2314
BtsIMutI	CAGTG	2 cut(s)	1820, 1964
BtuMI	TCGCGA	1 cut(s)	162
CaiI	CAGNNNCTG	2 cut(s)	1868, 2168
CciI	TCATGA	2 cut(s)	826, 2590
Cfr10I	RCCGGY	1 cut(s)	2358
Cfr13I	GGNCC	6 cut(s)	133, 249, 291, 1279, 1360, 2323
ClaI	ATCGAT	1 cut(s)	1785
CpoI	CGGWCCG	1 cut(s)	133
CseI	GACGC	1 cut(s)	2216
Csp6I	GTAC	4 cut(s)	849, 1446, 1836, 1860
CspI	CGGWCCG	1 cut(s)	133
CviAII	CATG	6 cut(s)	827, 836, 1406, 2186, 2591, 2599
CviQI	GTAC	4 cut(s)	849, 1446, 1836, 1860
DraIII	CACNNNGTG	1 cut(s)	478
EaeI	YGGCCR	3 cut(s)	217, 654, 2016
EagI	CGGCCG	1 cut(s)	217
Eam1104I	CTCTTC	4 cut(s)	407, 528, 1518, 2481
EarI	CTCTTC	4 cut(s)	407, 528, 1518, 2481
EclXI	CGGCCG	1 cut(s)	217
Eco105I	TACGTA	1 cut(s)	990
Eco130I	CCWWGG	2 cut(s)	260, 768
Eco147I	AGGCCT	1 cut(s)	2055
Eco24I	GRGCYC	3 cut(s)	168, 1932, 2067
Eco31I	GGTCTC	2 cut(s)	728, 2270
Eco32I	GATATC	1 cut(s)	2382
Eco47I	GGWCC	4 cut(s)	133, 249, 291, 1279
Eco47III	AGCGCT	1 cut(s)	155
Eco52I	CGGCCG	1 cut(s)	217
Eco57I	CTGAAG	6 cut(s)	977, 1542, 1890, 1988, 2136, 2625
Eco91I	GGTNACC	1 cut(s)	512
EcoO109I	RGGNCCY	2 cut(s)	1279, 1360
EcoO65I	GGTNACC	1 cut(s)	512
EcoRII	CCWGG	4 cut(s)	293, 969, 1312, 2135
EcoRV	GATATC	1 cut(s)	2382
EcoT14I	CCWWGG	2 cut(s)	260, 768
EcoT22I	ATGCAT	1 cut(s)	2600
EcoT38I	GRGCYC	3 cut(s)	168, 1932, 2067
ErhI	CCWWGG	2 cut(s)	260, 768
Esp3I	CGTCTC	1 cut(s)	2290
FaeI	CATG	6 cut(s)	830, 839, 1409, 2189, 2594, 2602
FalI	AAGNNNNNCTT	4 cut(s)	2043, 2075, 2312, 2344
FaqI	GGGAC	2 cut(s)	278, 1107
FatI	CATG	6 cut(s)	826, 835, 1405, 2185, 2590, 2598
FauI	CCCGC	3 cut(s)	176, 1350, 2333
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	2190
FokI	GGATG	8 cut(s)	236, 638, 741, 1523, 1597, 1826, 1899, 2301
FriOI	GRGCYC	3 cut(s)	168, 1932, 2067
FspBI	CTAG	5 cut(s)	420, 720, 846, 1068, 2141
GsaI	CCCAGC	2 cut(s)	876, 1122
HaeII	RGCGCY	3 cut(s)	157, 696, 1721
HaeIII	GGCC	7 cut(s)	219, 656, 1361, 1576, 2018, 2055, 2324
HapII	CCGG	6 cut(s)	220, 1544, 2155, 2296, 2359, 2617
HgaI	GACGC	1 cut(s)	2216
Hin1II	CATG	6 cut(s)	830, 839, 1409, 2189, 2594, 2602
HincII	GTYRAC	2 cut(s)	1459, 2668
HindII	GTYRAC	2 cut(s)	1459, 2668
HindIII	AAGCTT	2 cut(s)	962, 2249
HinfI	GANTC	8 cut(s)	101, 140, 338, 456, 886, 1184, 1492, 1528
HpaII	CCGG	6 cut(s)	220, 1544, 2155, 2296, 2359, 2617
HphI	GGTGA	4 cut(s)	404, 524, 911, 1756
Hpy166II	GTNNAC	6 cut(s)	1244, 1459, 2177, 2191, 2293, 2668
Hpy188I	TCNGA	7 cut(s)	133, 325, 430, 492, 1263, 2116, 2386
Hpy8I	GTNNAC	6 cut(s)	1244, 1459, 2177, 2191, 2293, 2668
Hpy99I	CGWCG	4 cut(s)	83, 215, 218, 2232
HpyCH4III	ACNGT	6 cut(s)	195, 242, 1035, 1698, 1824, 1864
HpyCH4IV	ACGT	6 cut(s)	989, 1240, 1548, 2011, 2173, 2271
HpyCH4V	TGCA	8 cut(s)	1208, 1244, 1703, 1828, 2162, 2441, 2561, 2598
HpySE526I	ACGT	6 cut(s)	989, 1240, 1548, 2011, 2173, 2271
Hsp92II	CATG	6 cut(s)	830, 839, 1409, 2189, 2594, 2602
Kpn2I	TCCGGA	2 cut(s)	1543, 2154
Ksp22I	TGATCA	1 cut(s)	628
LmnI	GCTCC	5 cut(s)	279, 328, 751, 1951, 2568
LweI	GCATC	9 cut(s)	64, 307, 1054, 1369, 1563, 1615, 1921, 2494, 2623
MaeI	CTAG	5 cut(s)	420, 720, 846, 1068, 2141
MaeII	ACGT	6 cut(s)	989, 1240, 1548, 2011, 2173, 2271
MaeIII	GTNAC	5 cut(s)	470, 512, 1153, 1423, 2310
MbiI	CCGCTC	1 cut(s)	247
MflI	RGATCY	5 cut(s)	821, 1516, 2151, 2369, 2656
MhlI	GDGCHC	4 cut(s)	168, 1246, 1932, 2067
MlsI	TGGCCA	1 cut(s)	2018
MluNI	TGGCCA	1 cut(s)	2018
MlyI	GAGTC	2 cut(s)	95, 1178
Mox20I	TGGCCA	1 cut(s)	2018
Mph1103I	ATGCAT	1 cut(s)	2600
MroI	TCCGGA	2 cut(s)	1543, 2154
MroXI	GAANNNNTTC	2 cut(s)	455, 862
MscI	TGGCCA	1 cut(s)	2018
Msp20I	TGGCCA	1 cut(s)	2018
MspA1I	CMGCKG	3 cut(s)	1151, 1163, 2165
MspI	CCGG	6 cut(s)	220, 1544, 2155, 2296, 2359, 2617
MspR9I	CCNGG	6 cut(s)	221, 295, 971, 1314, 2137, 2617
Mva1269I	GAATGC	3 cut(s)	592, 1484, 2600
MvaI	CCWGG	4 cut(s)	295, 971, 1314, 2137
NciI	CCSGG	2 cut(s)	221, 2617
NheI	GCTAGC	1 cut(s)	1067
NlaIII	CATG	6 cut(s)	830, 839, 1409, 2189, 2594, 2602
NlaIV	GGNNCC	5 cut(s)	705, 1271, 1281, 1362, 1518
NmeAIII	GCCGAG	2 cut(s)	545, 2248
NmuCI	GTSAC	4 cut(s)	470, 512, 1423, 2310
NruI	TCGCGA	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	2600
PagI	TCATGA	2 cut(s)	826, 2590
PceI	AGGCCT	1 cut(s)	2055
PctI	GAATGC	3 cut(s)	592, 1484, 2600
PdmI	GAANNNNTTC	2 cut(s)	455, 862
PfeI	GAWTC	6 cut(s)	140, 338, 456, 886, 1492, 1528
PflMI	CCANNNNNTGG	2 cut(s)	652, 1078
PfoI	TCCNGGA	1 cut(s)	1312
Ple19I	CGATCG	2 cut(s)	92, 131
PleI	GAGTC	2 cut(s)	95, 1178
PpsI	GAGTC	2 cut(s)	95, 1178
Ppu21I	YACGTR	1 cut(s)	990
PpuMI	RGGWCCY	1 cut(s)	1279
PshAI	GACNNNNGTC	1 cut(s)	2282
PshBI	ATTAAT	2 cut(s)	1728, 2394
PsiI	TTATAA	2 cut(s)	1637, 1842
Psp5II	RGGWCCY	1 cut(s)	1279
Psp6I	CCWGG	4 cut(s)	293, 969, 1312, 2135
PspEI	GGTNACC	1 cut(s)	512
PspFI	CCCAGC	2 cut(s)	872, 1118
PspGI	CCWGG	4 cut(s)	293, 969, 1312, 2135
PspN4I	GGNNCC	5 cut(s)	705, 1271, 1281, 1362, 1518
PspPI	GGNCC	6 cut(s)	133, 249, 291, 1279, 1360, 2323
PspPPI	RGGWCCY	1 cut(s)	1279
PstI	CTGCAG	1 cut(s)	1210
PstNI	CAGNNNCTG	2 cut(s)	1868, 2168
PsuI	RGATCY	5 cut(s)	821, 1516, 2151, 2369, 2656
PvuI	CGATCG	2 cut(s)	92, 131
PvuII	CAGCTG	3 cut(s)	1151, 1163, 2165
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	4 cut(s)	850, 1447, 1837, 1861
RsaNI	GTAC	4 cut(s)	849, 1446, 1836, 1860
Rsr2I	CGGWCCG	1 cut(s)	133
RsrII	CGGWCCG	1 cut(s)	133
Sau96I	GGNCC	6 cut(s)	133, 249, 291, 1279, 1360, 2323
SchI	GAGTC	2 cut(s)	95, 1178
ScrFI	CCNGG	6 cut(s)	221, 295, 971, 1314, 2137, 2617
SduI	GDGCHC	4 cut(s)	168, 1246, 1932, 2067
SfaNI	GCATC	9 cut(s)	64, 307, 1054, 1369, 1563, 1615, 1921, 2494, 2623
SfcI	CTRYAG	2 cut(s)	1158, 1206
SinI	GGWCC	4 cut(s)	133, 249, 291, 1279
SmlI	CTYRAG	1 cut(s)	2060
SmoI	CTYRAG	1 cut(s)	2060
SnaBI	TACGTA	1 cut(s)	990
SseBI	AGGCCT	1 cut(s)	2055
SspMI	CTAG	5 cut(s)	420, 720, 846, 1068, 2141
StuI	AGGCCT	1 cut(s)	2055
StyD4I	CCNGG	6 cut(s)	219, 293, 969, 1312, 2135, 2615
StyI	CCWWGG	2 cut(s)	260, 768
TaaI	ACNGT	6 cut(s)	195, 242, 1035, 1698, 1824, 1864
TaiI	ACGT	6 cut(s)	992, 1243, 1551, 2014, 2176, 2274
TaqI	TCGA	7 cut(s)	17, 40, 341, 379, 459, 1785, 2131
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	3 cut(s)	189, 208, 659
TfiI	GAWTC	6 cut(s)	140, 338, 456, 886, 1492, 1528
TscAI	CASTG	2 cut(s)	1827, 1971
TseFI	GTSAC	4 cut(s)	470, 512, 1423, 2310
Tsp45I	GTSAC	4 cut(s)	470, 512, 1423, 2310
TspDTI	ATGAA	7 cut(s)	743, 810, 824, 1416, 2114, 2579, 2607
TspGWI	ACGGA	4 cut(s)	580, 1262, 2221, 2581
TspRI	CASTG	2 cut(s)	1827, 1971
Van91I	CCANNNNNTGG	2 cut(s)	652, 1078
VneI	GTGCAC	1 cut(s)	1242
VpaK11BI	GGWCC	4 cut(s)	133, 249, 291, 1279
VspI	ATTAAT	2 cut(s)	1728, 2394
XapI	RAATTY	3 cut(s)	1565, 1652, 1735
XmiI	GTMKAC	1 cut(s)	2190
XmnI	GAANNNNTTC	2 cut(s)	455, 862
XspI	CTAG	5 cut(s)	420, 720, 846, 1068, 2141
Zsp2I	ATGCAT	1 cut(s)	2600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.