Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Forward (+)

30830415 .. 30832372

Gene Structure 1958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGACCACCACCGCCAACACCGCACTCCATCAGACCGCGATTCGAAGCCAGAGCGCTCCCACGACCACAGATCTCGCCGTGACAGGTCGCCGGAGCCGCGGGACGACCGGGAAGCGTCGCGCGACCACCGCGAGCGGTCGTACGAGAGGGAAGGGAGTAGAGAGAGATTCTAAGAGAGCTAGGGGTTTGGATGAGAGGAAAGAGAGGAAGCGATTTGATGACTGCCGAGTAAAGGAAGAAGAGGATGCTGGAGAATTGGAAAGGAGCACTGAAGGGAATGTGATTCACAGTGAGGTTAAGGTTAAGAAAGAAGAATTGGAGGATGATGAGGGCTCCACTACCACCCAAAATGGGGGTGCTCCGGTGTGTAATTTAGACAAAGCAGCCAATGCTAGTTCAAATGCTAGCACAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCTGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTGCAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTAAAACTTGCACAGGAGCGGGCTGCCAGGATGGGCTTTCGCCATGACCCAGAATTTGCTCCTGTTATAAACTTGTTCCCAGGACAGGTGGCAACAGATGTTGTTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTAGTCAATGTGACTAAACCAAGGCCCCTGTCAGACTGTTGCCTCTTATATAGTGGATATTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

261

Amino Acids

28.06

Weight (kDa)

8.64

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AccBSI	CCGCTC	2 cut(s)	135, 556
AccII	CGCG	5 cut(s)	38, 99, 120, 122, 131
AciI	CCGC	8 cut(s)	12, 21, 36, 97, 99, 129, 135, 556
AcsI	RAATTY	1 cut(s)	590
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	142, 454
AfeI	AGCGCT	1 cut(s)	55
AfiI	CCNNNNNNNGG	6 cut(s)	232, 351, 352, 622, 693, 694
AgeI	ACCGGT	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	399, 424
AjnI	CCWGG	2 cut(s)	563, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	179, 536
AluI	AGCT	2 cut(s)	179, 536
Alw21I	GWGCWC	2 cut(s)	269, 361
Aor51HI	AGCGCT	1 cut(s)	55
AoxI	GGCC	2 cut(s)	663, 740
ApeKI	GCWGC	2 cut(s)	383, 560
ApoI	RAATTY	1 cut(s)	590
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AsiGI	ACCGGT	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	56, 122
AspS9I	GGNCC	2 cut(s)	664, 741
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	533
AsuII	TTCGAA	1 cut(s)	43
AsuNHI	GCTAGC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	335
Bbv12I	GWGCWC	2 cut(s)	269, 361
BbvI	GCAGC	2 cut(s)	395, 547
BccI	CCATC	5 cut(s)	36, 422, 451, 487, 562
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	565, 618
BcnI	CCSGG	1 cut(s)	109
BfaI	CTAG	3 cut(s)	180, 393, 405
BfoI	RGCGCY	1 cut(s)	57
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	3 cut(s)	97, 384, 561
BlsI	GCNGC	3 cut(s)	98, 385, 562
Bme1390I	CCNGG	3 cut(s)	109, 565, 618
BmgT120I	GGNCC	2 cut(s)	664, 741
BmiI	GGNNCC	4 cut(s)	95, 334, 666, 743
BmrFI	CCNGG	3 cut(s)	109, 565, 618
BmsI	GCATC	4 cut(s)	235, 423, 475, 673
BmtI	GCTAGC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	5 cut(s)	97, 616, 660, 688, 737
BsaWI	WCCGGW	2 cut(s)	361, 509
Bsc4I	CCNNNNNNNGG	6 cut(s)	232, 351, 352, 622, 693, 694
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	565, 618
BseDI	CCNNGG	5 cut(s)	97, 616, 660, 688, 737
BseGI	GGATG	7 cut(s)	196, 250, 328, 433, 438, 466, 573
BseLI	CCNNNNNNNGG	6 cut(s)	232, 351, 352, 622, 693, 694
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	523
BseXI	GCAGC	2 cut(s)	395, 547
Bsh1236I	CGCG	5 cut(s)	38, 99, 120, 122, 131
Bsh1285I	CGRYCG	2 cut(s)	108, 139
BshFI	GGCC	2 cut(s)	665, 742
BshTI	ACCGGT	1 cut(s)	509
BsiEI	CGRYCG	2 cut(s)	108, 139
BsiHKAI	GWGCWC	2 cut(s)	269, 361
BsiSI	CCGG	4 cut(s)	91, 108, 362, 510
BsiWI	CGTACG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	6 cut(s)	232, 351, 352, 622, 693, 694
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	665, 742
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	3 cut(s)	269, 335, 361
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	8 cut(s)	12, 21, 36, 97, 99, 129, 135, 556
BspANI	GGCC	2 cut(s)	665, 742
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	5 cut(s)	38, 99, 120, 122, 131
BspLI	GGNNCC	4 cut(s)	95, 334, 666, 743
BspOI	GCTAGC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	43
BsrBI	CCGCTC	2 cut(s)	135, 556
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	5 cut(s)	97, 616, 660, 688, 737
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	3 cut(s)	660, 688, 737
Bst2UI	CCWGG	2 cut(s)	565, 618
Bst4CI	ACNGT	2 cut(s)	290, 755
Bst6I	CTCTTC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	3 cut(s)	133, 406, 558
BstDEI	CTNAG	2 cut(s)	171, 648
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	7 cut(s)	196, 250, 328, 433, 438, 466, 573
BstFNI	CGCG	5 cut(s)	38, 99, 120, 122, 131
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	56, 122
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMCI	CGRYCG	2 cut(s)	108, 139
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 96, 128, 389
BstNI	CCWGG	2 cut(s)	565, 618
BstSCI	CCNGG	3 cut(s)	107, 563, 616
BstUI	CGCG	5 cut(s)	38, 99, 120, 122, 131
BstV1I	GCAGC	2 cut(s)	395, 547
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	665, 742
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	7 cut(s)	196, 250, 328, 433, 438, 466, 573
BtsIMutI	CAGTG	2 cut(s)	267, 295
Cac8I	GCNNGC	3 cut(s)	133, 406, 558
CfoI	GCGC	2 cut(s)	56, 122
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	664, 741
Cfr42I	CCGCGG	1 cut(s)	100
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	141, 453
CspAI	ACCGGT	1 cut(s)	509
CviAII	CATG	2 cut(s)	581, 710
CviQI	GTAC	2 cut(s)	141, 453
DdeI	CTNAG	2 cut(s)	171, 648
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	3 cut(s)	660, 688, 737
Eco24I	GRGCYC	1 cut(s)	335
Eco47III	AGCGCT	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	291
EcoO109I	RGGNCCY	2 cut(s)	664, 741
EcoRII	CCWGG	2 cut(s)	563, 616
EcoT14I	CCWWGG	3 cut(s)	660, 688, 737
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	3 cut(s)	660, 688, 737
FaeI	CATG	2 cut(s)	584, 713
FaiI	YATR	6 cut(s)	531, 582, 605, 711, 766, 768
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	2 cut(s)	580, 709
FauI	CCCGC	2 cut(s)	92, 549
Fnu4HI	GCNGC	3 cut(s)	97, 384, 561
FokI	GGATG	7 cut(s)	203, 257, 335, 440, 445, 453, 580
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	97, 384, 561
FspBI	CTAG	3 cut(s)	180, 393, 405
GlaI	GCGC	2 cut(s)	55, 121
GluI	GCNGC	3 cut(s)	97, 384, 561
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	665, 742
HapII	CCGG	4 cut(s)	91, 108, 362, 510
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	2 cut(s)	56, 122
Hin1II	CATG	2 cut(s)	584, 713
Hin6I	GCGC	2 cut(s)	54, 120
HinP1I	GCGC	2 cut(s)	54, 120
HinfI	GANTC	3 cut(s)	40, 167, 283
HpaII	CCGG	4 cut(s)	91, 108, 362, 510
HphI	GGTGA	1 cut(s)	533
Hpy188I	TCNGA	4 cut(s)	33, 516, 651, 751
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	4 cut(s)	145, 266, 418, 687
HpyCH4III	ACNGT	2 cut(s)	290, 755
HpyCH4V	TGCA	5 cut(s)	436, 449, 466, 497, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 96, 128, 389
HpyF3I	CTNAG	2 cut(s)	171, 648
Hsp92II	CATG	2 cut(s)	584, 713
HspAI	GCGC	2 cut(s)	54, 120
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	7 cut(s)	61, 93, 264, 338, 364, 553, 601
Lsp1109I	GCAGC	2 cut(s)	395, 547
LweI	GCATC	4 cut(s)	235, 423, 475, 673
MaeI	CTAG	3 cut(s)	180, 393, 405
MaeIII	GTNAC	2 cut(s)	79, 727
MalI	GATC	1 cut(s)	72
MbiI	CCGCTC	2 cut(s)	135, 556
MboI	GATC	1 cut(s)	70
MboII	GAAGA	4 cut(s)	248, 251, 323, 665
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	3 cut(s)	269, 335, 361
MluCI	AATT	5 cut(s)	254, 314, 370, 486, 590
MseI	TTAA	3 cut(s)	297, 303, 784
MslI	CAYNNNNRTG	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	4 cut(s)	91, 108, 362, 510
MspR9I	CCNGG	3 cut(s)	109, 565, 618
MvaI	CCWGG	2 cut(s)	565, 618
MvnI	CGCG	5 cut(s)	38, 99, 120, 122, 131
MwoI	GCNNNNNNNGC	4 cut(s)	20, 96, 128, 389
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	70
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	2 cut(s)	584, 713
NlaIV	GGNNCC	4 cut(s)	95, 334, 666, 743
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	2 cut(s)	79, 727
NspV	TTCGAA	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	40, 167, 283
Pfl23II	CGTACG	1 cut(s)	140
PinAI	ACCGGT	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	98, 385, 562
PsiI	TTATAA	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	563, 616
PspGI	CCWGG	2 cut(s)	563, 616
PspLI	CGTACG	1 cut(s)	140
PspN4I	GGNNCC	4 cut(s)	95, 334, 666, 743
PspPI	GGNCC	2 cut(s)	664, 741
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	2 cut(s)	142, 454
RsaNI	GTAC	2 cut(s)	141, 453
RseI	CAYNNNNRTG	1 cut(s)	714
SacII	CCGCGG	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	297, 303, 784
SatI	GCNGC	3 cut(s)	97, 384, 561
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	664, 741
ScrFI	CCNGG	3 cut(s)	109, 565, 618
SduI	GDGCHC	3 cut(s)	269, 335, 361
SetI	ASST	7 cut(s)	88, 181, 297, 303, 442, 538, 627
SfaNI	GCATC	4 cut(s)	235, 423, 475, 673
Sfr303I	CCGCGG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	43
SgrBI	CCGCGG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	714
Sse9I	AATT	5 cut(s)	254, 314, 370, 486, 590
SsiI	CCGC	8 cut(s)	12, 21, 36, 97, 99, 129, 135, 556
SspMI	CTAG	3 cut(s)	180, 393, 405
StyD4I	CCNGG	3 cut(s)	107, 563, 616
StyI	CCWWGG	3 cut(s)	660, 688, 737
TaaI	ACNGT	2 cut(s)	290, 755
TaqI	TCGA	2 cut(s)	43, 676
TasI	AATT	5 cut(s)	254, 314, 370, 486, 590
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	3 cut(s)	40, 167, 283
Tru1I	TTAA	3 cut(s)	297, 303, 784
Tru9I	TTAA	3 cut(s)	297, 303, 784
TscAI	CASTG	2 cut(s)	274, 295
TseFI	GTSAC	2 cut(s)	79, 727
TseI	GCWGC	2 cut(s)	383, 560
Tsp45I	GTSAC	2 cut(s)	79, 727
TspDTI	ATGAA	2 cut(s)	546, 720
TspRI	CASTG	2 cut(s)	274, 295
XapI	RAATTY	1 cut(s)	590
XspI	CTAG	3 cut(s)	180, 393, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.