Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Forward (+)

11765706 .. 11769939

Gene Structure 4234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2481 bp

ATGGAGAAAGAGAAATCGAGCAAGCGCTCCCGAGACGAGCGCGACCGACGAGACCGAGACCGCGACAGGGATCATCACAAGCATCGAAGCAGCCGCGACGCTTCCGATGACCACCACCGCCAACACCGCACTCGATCGGACCGCGATTCGAAGCCCGAGCGCTCCCACGACCACAGATCTCGCCGTGACAGGTCGCCGGAGCCGCGGGACGACCGTGAAGCGTCGCGCGACCACCGCGAGCGGTCGTACGAGAGGGAAGGGAGTAGAGAGAGGTCCAGGCATCGCGAAGTGAAGCGGGAGAGGTCGGAGGAGGGAGAGGATATGGTGGAGAGGAGGCATAAGAGGAAAGAGAGGGAGAGGAGTGAGGGTAGAGATGGCGGTGTGGATGAGTCTGAAGATTCTAAGAGAGCTAGGGGTTTGGATGAGAGGAAGCGATTTGATGACCGCCGAGTAAAGGAAGAAGAGGATGCTGGAGAATTGGAAGGGAATGTGATTCACAGTGAGGTTAAGGTTAAGAAAGAAGAATTGGAGGATGATGAGGGCTTCACTACCACCCAAAATGGGGGTGCTCCGGTGGGTAATGGTGCCAGTCTGGATTCTACTATGGAATCAAGGGTTGTGCCTGAGACCTCTTCCCCCCCTAGTCATCCCCATCCTACCAAGGTATATTCGATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCTTCAACTGCTGGAAGAAGTGGAAATCTGCCTCCTGTTGATTTAGATAAAATTAAGAATCTTCTGGCGAAACGTAAGGAATTGGCTGACAAGCTGAACAAAACGAAGTTAGACAAAGCAGCCAATGCTAGTTCAGATGCTAGCGCAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCTGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTACAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTAAAACTTGCACAGGAGCGGGCTGCCAGGATGGGATTTCGCCATGACCCAGAATTTGCTCCTGTTATAAACTTGTTCCCAGGACAGGTGGCAACGGATGTTGTCCCCGCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTAGTCAATGTGACTAAACCAAACAACCTCAGCACTTTAAAGGTCAACATTAACAAACAGAAGAAAGACGCATTCCAAATTCTTAAACCTGAAGTCGATATGGATCCTGAATCAAATCCTTTTTTTGACCCGAAGATGGGCATTAATATGACGAAGATTATGAGGCCAAAGAGGATGAACTTCCAGTTTGTAGAGGAAGGGAAGTGGTCAAGAGATGCTGAACATATGAAGTTGAAGAGTAAATTTGGGGAATTGCAAGCAAAAGAGCATAGGGCGAAGCAGGCCCAGTTGGCAAAGGCAAAGGCAGCACCTGATACAAATCCAAATTTGATAGAGGTAGCAGAAAGAGTCATCACCAAAGAAAAACCAAAGGATCCAATTCCTGAAGTTGAGTGGTGGGATGTGTCCTTTTTACAATCTGGTACTTATGGCGAGCTTGTTGATGGTAGAATACCTGAAGACAGATTAAAGTTGGACAAAATCACCATCTATGTTGAACATCCTCAGCCCATTGAGCCCCCTGTGGAGCCAGCTCCTCCACCACCTCAACCATTAAAGTTGACCAAGAAAGAGCAGAAAAAACTACGCACACAGCGTCGTCTTGCTAGAGAGAAAGATAAGCAGGAGATGATTAGACAGGGCCTGATTGAACCCCCCAAGTCAAAAGTTAAAATGAGTAATTTGATGAAAGTTCTTGGCTCTGAAGCAACCCAAGATCCAACCAGACTGGAAAAGGAGATCCGGAGTGCAGCTGCTGAACGTGAACAAGCTCATATAGACAGGAATATTGCCCGCAAGCTCACTCCTGCTGAGCGCCGTGAGAAGAAAGAGAGGAAGCTTTTTGATGATCCAAATAATGTGGATACCATAGTCTCAGTTTATAAAATCAATGATCTATCTCATCCAAAGGCCCGCTTTAAGATTGATGTTAATGCCAGAGAGAATCGGCTGACTGGATGTGCTGTGATCTCAGATGGTATGAATGTTGTGGCTGTTGAAGGTGGAAGCAAATCTATCAAAAGGTATGCAAAGGTCATGCTTCGGCGCATAAACTGGGCTGAGGCTGTGAAAGAGGAGGAAGAAGATGAAGAAGAGAATGATGATAAGCCTCCTAACAAGTGTGTCTTGGTGTGGCAAGGAAGTGTTGCCAGGCCTAGTTTCAATAGATTTTTGGTTCATGAATGCATGACTGAAGCTGCTGGTCGAAAGTTCTTTGCTGATGCTGGCGTTGCTCATTACTGGGATCTTGCAGTCAACTTTGCAGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

827

Amino Acids

93.91

Weight (kDa)

8.92

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP3	PF08572	441 - 670	1.8e-64	pre-mRNA processing factor 3 domain
Prp3_C	PF06544	694 - 819	2.9e-42	Small nuclear ribonucleoprotein Prp3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1094, 2088
AccB1I	GGYRCC	1 cut(s)	584
AccBSI	CCGCTC	3 cut(s)	241, 1045, 1136
AccII	CGCG	9 cut(s)	42, 63, 96, 144, 205, 226, 228, 237, 285
AccIII	TCCGGA	1 cut(s)	1947
AclWI	GGATC	9 cut(s)	78, 1304, 1317, 1574, 1587, 1916, 1939, 2048, 2457
AcsI	RAATTY	4 cut(s)	1079, 1284, 1448, 1531
AcuI	CTGAAG	6 cut(s)	414, 1317, 1611, 1683, 1929, 2418
AfaI	GTAC	5 cut(s)	248, 742, 943, 985, 1630
AfeI	AGCGCT	2 cut(s)	26, 161
AfiI	CCNNNNNNNGG	9 cut(s)	67, 454, 561, 562, 1111, 1182, 1183, 1342, 1343
AgeI	ACCGGT	1 cut(s)	998
AgsI	TTSAA	7 cut(s)	759, 913, 1441, 1703, 1856, 2204, 2368
AjnI	CCWGG	4 cut(s)	275, 1052, 1105, 2354
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	5 cut(s)	27, 45, 51, 620, 2083
AlwI	GGATC	9 cut(s)	78, 1304, 1317, 1574, 1587, 1916, 1939, 2048, 2457
AlwNI	CAGNNNCTG	3 cut(s)	1517, 1849, 1961
Ama87I	CYCGRG	2 cut(s)	30, 155
Aor13HI	TCCGGA	1 cut(s)	1947
Aor51HI	AGCGCT	2 cut(s)	26, 161
AoxI	GGCC	6 cut(s)	1152, 1370, 1488, 1846, 2115, 2357
ApeKI	GCWGC	7 cut(s)	90, 872, 1049, 1511, 1955, 1958, 2402
ApoI	RAATTY	4 cut(s)	1079, 1284, 1448, 1531
ArsI	GACNNNNNNTTYG	2 cut(s)	1064, 1096
AseI	ATTAAT	1 cut(s)	1350
AsiGI	ACCGGT	1 cut(s)	998
AspLEI	GCGC	7 cut(s)	27, 42, 162, 228, 899, 2022, 2253
AspS9I	GGNCC	6 cut(s)	139, 273, 1153, 1489, 1846, 2116
AsuHPI	GGTGA	3 cut(s)	1022, 1552, 1681
AsuII	TTCGAA	1 cut(s)	149
AsuNHI	GCTAGC	1 cut(s)	893
AvaI	CYCGRG	2 cut(s)	30, 155
AvaII	GGWCC	2 cut(s)	139, 273
BaeI	ACNNNNGTAYC	2 cut(s)	2061, 2094
BamHI	GGATCC	2 cut(s)	1309, 1579
BanI	GGYRCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	1725
BbsI	GAAGAC	1 cut(s)	1671
Bbv12I	GWGCWC	1 cut(s)	571
BbvCI	CCTCAGC	3 cut(s)	1235, 1710, 2265
BbvI	GCAGC	7 cut(s)	102, 884, 1036, 1523, 1945, 1967, 2389
BceAI	ACGGC	2 cut(s)	168, 2007
BciT130I	CCWGG	4 cut(s)	277, 1054, 1107, 2356
BciVI	GTATCC	1 cut(s)	2062
BcoDI	GTCTC	5 cut(s)	27, 45, 51, 620, 2083
BfaI	CTAG	8 cut(s)	411, 642, 738, 882, 894, 1812, 2361, 2479
BfoI	RGCGCY	3 cut(s)	28, 163, 2023
BfuI	GTATCC	1 cut(s)	2062
BglI	GCCNNNNNGGC	1 cut(s)	1496
BglII	AGATCT	2 cut(s)	176, 713
BisI	GCNGC	9 cut(s)	91, 94, 203, 873, 1050, 1512, 1956, 1959, 2403
BlpI	GCTNAGC	1 cut(s)	2016
BlsI	GCNGC	9 cut(s)	92, 95, 204, 874, 1051, 1513, 1957, 1960, 2404
Bme1390I	CCNGG	4 cut(s)	277, 1054, 1107, 2356
Bme18I	GGWCC	2 cut(s)	139, 273
BmeT110I	CYCGRG	2 cut(s)	30, 155
BmgT120I	GGNCC	6 cut(s)	139, 273, 1153, 1489, 1846, 2116
BmiI	GGNNCC	6 cut(s)	201, 586, 1155, 1311, 1581, 1734
BmrFI	CCNGG	4 cut(s)	277, 1054, 1107, 2356
BmrI	ACTGGG	3 cut(s)	1486, 2269, 2455
BmsI	GCATC	9 cut(s)	91, 289, 457, 880, 912, 964, 1162, 1411, 2416
BmtI	GCTAGC	1 cut(s)	897
BmuI	ACTGGG	3 cut(s)	1486, 2269, 2455
BpiI	GAAGAC	1 cut(s)	1671
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	3 cut(s)	1235, 1710, 2265
Bpu1102I	GCTNAGC	1 cut(s)	2016
Bpu14I	TTCGAA	1 cut(s)	149
BsaBI	GATNNNNATC	2 cut(s)	1308, 1524
BsaI	GGTCTC	3 cut(s)	45, 51, 620
BsaJI	CCNNGG	5 cut(s)	203, 660, 1105, 1149, 1177
BsaWI	WCCGGW	3 cut(s)	571, 998, 1947
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	9 cut(s)	67, 454, 561, 562, 1111, 1182, 1183, 1342, 1343
Bse118I	RCCGGY	1 cut(s)	998
Bse1I	ACTGG	8 cut(s)	588, 1012, 1390, 1492, 1938, 2164, 2264, 2450
Bse8I	GATNNNNATC	2 cut(s)	1308, 1524
BseAI	TCCGGA	1 cut(s)	1947
BseBI	CCWGG	4 cut(s)	277, 1054, 1107, 2356
BseDI	CCNNGG	5 cut(s)	203, 660, 1105, 1149, 1177
BseJI	GATNNNNATC	2 cut(s)	1308, 1524
BseLI	CCNNNNNNNGG	9 cut(s)	67, 454, 561, 562, 1111, 1182, 1183, 1342, 1343
BseMII	CTCAG	8 cut(s)	615, 1151, 1249, 1724, 2007, 2094, 2190, 2256
BseNI	ACTGG	8 cut(s)	588, 1012, 1390, 1492, 1938, 2164, 2264, 2450
BseRI	GAGGAG	5 cut(s)	323, 346, 373, 1731, 2294
BseXI	GCAGC	7 cut(s)	102, 884, 1036, 1523, 1945, 1967, 2389
BsgI	GTGCAG	1 cut(s)	1974
Bsh1236I	CGCG	9 cut(s)	42, 63, 96, 144, 205, 226, 228, 237, 285
Bsh1285I	CGRYCG	4 cut(s)	46, 137, 214, 245
BshFI	GGCC	6 cut(s)	1154, 1372, 1490, 1848, 2117, 2359
BshNI	GGYRCC	1 cut(s)	584
BshTI	ACCGGT	1 cut(s)	998
BsiEI	CGRYCG	4 cut(s)	46, 137, 214, 245
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	2 cut(s)	30, 155
BsiSI	CCGG	4 cut(s)	197, 572, 999, 1948
BsiWI	CGTACG	1 cut(s)	246
BslFI	GGGAC	3 cut(s)	221, 763, 1115
BslI	CCNNNNNNNGG	9 cut(s)	67, 454, 561, 562, 1111, 1182, 1183, 1342, 1343
BsmAI	GTCTC	5 cut(s)	27, 45, 51, 620, 2083
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	3 cut(s)	221, 763, 1115
BsmI	GAATGC	2 cut(s)	1277, 2393
BsnI	GGCC	6 cut(s)	1154, 1372, 1490, 1848, 2117, 2359
Bso31I	GGTCTC	3 cut(s)	45, 51, 620
BsoBI	CYCGRG	2 cut(s)	30, 155
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	571, 1725
Bsp13I	TCCGGA	1 cut(s)	1947
Bsp1720I	GCTNAGC	1 cut(s)	2016
Bsp68I	TCGCGA	1 cut(s)	285
BspANI	GGCC	6 cut(s)	1154, 1372, 1490, 1848, 2117, 2359
BspCNI	CTCAG	8 cut(s)	616, 1150, 1248, 1723, 2008, 2093, 2189, 2257
BspEI	TCCGGA	1 cut(s)	1947
BspFNI	CGCG	9 cut(s)	42, 63, 96, 144, 205, 226, 228, 237, 285
BspHI	TCATGA	2 cut(s)	718, 2383
BspLI	GGNNCC	6 cut(s)	201, 586, 1155, 1311, 1581, 1734
BspOI	GCTAGC	1 cut(s)	897
BspPI	GGATC	9 cut(s)	78, 1304, 1317, 1574, 1587, 1916, 1939, 2048, 2457
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	584
BspTNI	GGTCTC	3 cut(s)	45, 51, 620
BsrBI	CCGCTC	3 cut(s)	241, 1045, 1136
BsrFI	RCCGGY	1 cut(s)	998
BsrI	ACTGG	8 cut(s)	588, 1012, 1390, 1492, 1938, 2164, 2264, 2450
BssAI	RCCGGY	1 cut(s)	998
BssECI	CCNNGG	5 cut(s)	203, 660, 1105, 1149, 1177
BssT1I	CCWWGG	3 cut(s)	660, 1149, 1177
Bst2UI	CCWGG	4 cut(s)	277, 1054, 1107, 2356
Bst4CI	ACNGT	2 cut(s)	215, 500
Bst6I	CTCTTC	4 cut(s)	456, 637, 1436, 2292
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstBI	TTCGAA	1 cut(s)	149
BstDEI	CTNAG	9 cut(s)	402, 624, 1137, 1235, 1710, 2016, 2080, 2176, 2265
BstDSI	CCRYGG	1 cut(s)	203
BstFNI	CGCG	9 cut(s)	42, 63, 96, 144, 205, 226, 228, 237, 285
BstH2I	RGCGCY	3 cut(s)	28, 163, 2023
BstHHI	GCGC	7 cut(s)	27, 42, 162, 228, 899, 2022, 2253
BstMAI	GTCTC	5 cut(s)	27, 45, 51, 620, 2083
BstMCI	CGRYCG	4 cut(s)	46, 137, 214, 245
BstMWI	GCNNNNNNNGC	9 cut(s)	126, 202, 234, 878, 1487, 1496, 1511, 1720, 2435
BstNI	CCWGG	4 cut(s)	277, 1054, 1107, 2356
BstSCI	CCNGG	4 cut(s)	275, 1052, 1105, 2354
BstUI	CGCG	9 cut(s)	42, 63, 96, 144, 205, 226, 228, 237, 285
BstV1I	GCAGC	7 cut(s)	102, 884, 1036, 1523, 1945, 1967, 2389
BstV2I	GAAGAC	1 cut(s)	1671
BstX2I	RGATCY	7 cut(s)	176, 713, 1309, 1579, 1921, 1944, 2449
BstYI	RGATCY	7 cut(s)	176, 713, 1309, 1579, 1921, 1944, 2449
BsuI	GTATCC	1 cut(s)	2062
BsuRI	GGCC	6 cut(s)	1154, 1372, 1490, 1848, 2117, 2359
BtgI	CCRYGG	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	505
BtuMI	TCGCGA	1 cut(s)	285
CaiI	CAGNNNCTG	3 cut(s)	1517, 1849, 1961
CciI	TCATGA	2 cut(s)	718, 2383
CfoI	GCGC	7 cut(s)	27, 42, 162, 228, 899, 2022, 2253
Cfr10I	RCCGGY	1 cut(s)	998
Cfr13I	GGNCC	6 cut(s)	139, 273, 1153, 1489, 1846, 2116
Cfr42I	CCGCGG	1 cut(s)	206
CpoI	CGGWCCG	1 cut(s)	139
CseI	GACGC	4 cut(s)	107, 210, 1283, 1790
Csp6I	GTAC	5 cut(s)	247, 741, 942, 984, 1629
CspAI	ACCGGT	1 cut(s)	998
CspCI	CAANNNNNGTGG	2 cut(s)	2046, 2081
CspI	CGGWCCG	1 cut(s)	139
CviAII	CATG	7 cut(s)	719, 728, 1070, 1199, 2242, 2384, 2392
CviQI	GTAC	5 cut(s)	247, 741, 942, 984, 1629
DdeI	CTNAG	9 cut(s)	402, 624, 1137, 1235, 1710, 2016, 2080, 2176, 2265
DraI	TTTAAA	1 cut(s)	1245
Eam1104I	CTCTTC	4 cut(s)	456, 637, 1436, 2292
EarI	CTCTTC	4 cut(s)	456, 637, 1436, 2292
Eco130I	CCWWGG	3 cut(s)	660, 1149, 1177
Eco147I	AGGCCT	1 cut(s)	2359
Eco24I	GRGCYC	1 cut(s)	1725
Eco31I	GGTCTC	3 cut(s)	45, 51, 620
Eco47I	GGWCC	2 cut(s)	139, 273
Eco47III	AGCGCT	2 cut(s)	26, 161
Eco57I	CTGAAG	6 cut(s)	414, 1317, 1611, 1683, 1929, 2418
Eco88I	CYCGRG	2 cut(s)	30, 155
EcoO109I	RGGNCCY	2 cut(s)	1153, 1846
EcoRII	CCWGG	4 cut(s)	275, 1052, 1105, 2354
EcoT14I	CCWWGG	3 cut(s)	660, 1149, 1177
EcoT22I	ATGCAT	1 cut(s)	2393
EcoT38I	GRGCYC	1 cut(s)	1725
ErhI	CCWWGG	3 cut(s)	660, 1149, 1177
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	7 cut(s)	722, 731, 1073, 1202, 2245, 2387, 2395
FalI	AAGNNNNNCTT	4 cut(s)	2105, 2137, 2315, 2347
FaqI	GGGAC	3 cut(s)	221, 763, 1115
FatI	CATG	7 cut(s)	718, 727, 1069, 1198, 2241, 2383, 2391
FauI	CCCGC	6 cut(s)	198, 288, 1038, 1141, 2006, 2126
FauNDI	CATATG	1 cut(s)	1431
Fnu4HI	GCNGC	9 cut(s)	91, 94, 203, 873, 1050, 1512, 1956, 1959, 2403
FriOI	GRGCYC	1 cut(s)	1725
Fsp4HI	GCNGC	9 cut(s)	91, 94, 203, 873, 1050, 1512, 1956, 1959, 2403
FspBI	CTAG	8 cut(s)	411, 642, 738, 882, 894, 1812, 2361, 2479
GlaI	GCGC	7 cut(s)	26, 41, 161, 227, 898, 2021, 2252
GluI	GCNGC	9 cut(s)	91, 94, 203, 873, 1050, 1512, 1956, 1959, 2403
GsuI	CTGGAG	1 cut(s)	492
HaeII	RGCGCY	3 cut(s)	28, 163, 2023
HaeIII	GGCC	6 cut(s)	1154, 1372, 1490, 1848, 2117, 2359
HapII	CCGG	4 cut(s)	197, 572, 999, 1948
HgaI	GACGC	4 cut(s)	107, 210, 1283, 1790
HhaI	GCGC	7 cut(s)	27, 42, 162, 228, 899, 2022, 2253
Hin1II	CATG	7 cut(s)	722, 731, 1073, 1202, 2245, 2387, 2395
Hin6I	GCGC	7 cut(s)	25, 40, 160, 226, 897, 2020, 2251
HinP1I	GCGC	7 cut(s)	25, 40, 160, 226, 897, 2020, 2251
HincII	GTYRAC	3 cut(s)	1252, 1767, 2461
HindII	GTYRAC	3 cut(s)	1252, 1767, 2461
HindIII	AAGCTT	1 cut(s)	2042
HpaII	CCGG	4 cut(s)	197, 572, 999, 1948
HphI	GGTGA	3 cut(s)	1022, 1552, 1681
Hpy166II	GTNNAC	4 cut(s)	1252, 1767, 1970, 2461
Hpy188I	TCNGA	9 cut(s)	106, 139, 307, 394, 889, 1005, 1140, 1909, 2179
Hpy188III	TCNNGA	9 cut(s)	30, 284, 593, 719, 1313, 1416, 1589, 1948, 2384
Hpy8I	GTNNAC	4 cut(s)	1252, 1767, 1970, 2461
Hpy99I	CGWCG	4 cut(s)	51, 101, 226, 1806
HpyAV	CCTTC	6 cut(s)	251, 476, 907, 1176, 1397, 2198
HpyCH4III	ACNGT	2 cut(s)	215, 500
HpyCH4IV	ACGT	2 cut(s)	826, 1966
HpyF10VI	GCNNNNNNNGC	9 cut(s)	126, 202, 234, 878, 1487, 1496, 1511, 1720, 2435
HpyF3I	CTNAG	9 cut(s)	402, 624, 1137, 1235, 1710, 2016, 2080, 2176, 2265
HpySE526I	ACGT	2 cut(s)	826, 1966
Hsp92II	CATG	7 cut(s)	722, 731, 1073, 1202, 2245, 2387, 2395
HspAI	GCGC	7 cut(s)	25, 40, 160, 226, 897, 2020, 2251
Kpn2I	TCCGGA	1 cut(s)	1947
KspI	CCGCGG	1 cut(s)	206
LmnI	GCTCC	8 cut(s)	32, 167, 199, 574, 1042, 1090, 1732, 1744
Lsp1109I	GCAGC	7 cut(s)	102, 884, 1036, 1523, 1945, 1967, 2389
LweI	GCATC	9 cut(s)	91, 289, 457, 880, 912, 964, 1162, 1411, 2416
MaeI	CTAG	8 cut(s)	411, 642, 738, 882, 894, 1812, 2361, 2479
MaeII	ACGT	2 cut(s)	826, 1966
MaeIII	GTNAC	2 cut(s)	185, 1216
MbiI	CCGCTC	3 cut(s)	241, 1045, 1136
MflI	RGATCY	7 cut(s)	176, 713, 1309, 1579, 1921, 1944, 2449
MhlI	GDGCHC	2 cut(s)	571, 1725
MlyI	GAGTC	2 cut(s)	398, 1563
MmeI	TCCRAC	3 cut(s)	285, 1659, 1949
Mph1103I	ATGCAT	1 cut(s)	2393
MroI	TCCGGA	1 cut(s)	1947
MslI	CAYNNNNRTG	2 cut(s)	1203, 1352
MspA1I	CMGCKG	2 cut(s)	205, 1958
MspI	CCGG	4 cut(s)	197, 572, 999, 1948
MspR9I	CCNGG	4 cut(s)	277, 1054, 1107, 2356
Mva1269I	GAATGC	2 cut(s)	1277, 2393
MvaI	CCWGG	4 cut(s)	277, 1054, 1107, 2356
MvnI	CGCG	9 cut(s)	42, 63, 96, 144, 205, 226, 228, 237, 285
MwoI	GCNNNNNNNGC	9 cut(s)	126, 202, 234, 878, 1487, 1496, 1511, 1720, 2435
NdeI	CATATG	1 cut(s)	1431
NheI	GCTAGC	1 cut(s)	893
NlaIII	CATG	7 cut(s)	722, 731, 1073, 1202, 2245, 2387, 2395
NlaIV	GGNNCC	6 cut(s)	201, 586, 1155, 1311, 1581, 1734
NmeAIII	GCCGAG	1 cut(s)	473
NmuCI	GTSAC	2 cut(s)	185, 1216
NruI	TCGCGA	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	2393
NspV	TTCGAA	1 cut(s)	149
PagI	TCATGA	2 cut(s)	718, 2383
PceI	AGGCCT	1 cut(s)	2359
PcsI	WCGNNNNNNNCGW	1 cut(s)	1798
PctI	GAATGC	2 cut(s)	1277, 2393
PfeI	GAWTC	8 cut(s)	146, 398, 493, 596, 608, 811, 1316, 2149
Pfl23II	CGTACG	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	998
PkrI	GCNGC	9 cut(s)	92, 95, 204, 874, 1051, 1513, 1957, 1960, 2404
Ple19I	CGATCG	1 cut(s)	137
PleI	GAGTC	2 cut(s)	397, 1562
PpsI	GAGTC	2 cut(s)	397, 1562
PshBI	ATTAAT	1 cut(s)	1350
PsiI	TTATAA	2 cut(s)	1094, 2088
Psp6I	CCWGG	4 cut(s)	275, 1052, 1105, 2354
PspGI	CCWGG	4 cut(s)	275, 1052, 1105, 2354
PspLI	CGTACG	1 cut(s)	246
PspN4I	GGNNCC	6 cut(s)	201, 586, 1155, 1311, 1581, 1734
PspPI	GGNCC	6 cut(s)	139, 273, 1153, 1489, 1846, 2116
PstNI	CAGNNNCTG	3 cut(s)	1517, 1849, 1961
PsuI	RGATCY	7 cut(s)	176, 713, 1309, 1579, 1921, 1944, 2449
PvuI	CGATCG	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	1958
RruI	TCGCGA	1 cut(s)	285
RsaI	GTAC	5 cut(s)	248, 742, 943, 985, 1630
RsaNI	GTAC	5 cut(s)	247, 741, 942, 984, 1629
RseI	CAYNNNNRTG	2 cut(s)	1203, 1352
Rsr2I	CGGWCCG	1 cut(s)	139
RsrII	CGGWCCG	1 cut(s)	139
SacII	CCGCGG	1 cut(s)	206
SatI	GCNGC	9 cut(s)	91, 94, 203, 873, 1050, 1512, 1956, 1959, 2403
Sau96I	GGNCC	6 cut(s)	139, 273, 1153, 1489, 1846, 2116
SchI	GAGTC	2 cut(s)	398, 1563
ScrFI	CCNGG	4 cut(s)	277, 1054, 1107, 2356
SduI	GDGCHC	2 cut(s)	571, 1725
SfaNI	GCATC	9 cut(s)	91, 289, 457, 880, 912, 964, 1162, 1411, 2416
Sfr303I	CCGCGG	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	149
SgrBI	CCGCGG	1 cut(s)	206
SinI	GGWCC	2 cut(s)	139, 273
SmiMI	CAYNNNNRTG	2 cut(s)	1203, 1352
SseBI	AGGCCT	1 cut(s)	2359
SspI	AATATT	1 cut(s)	1993
SspMI	CTAG	8 cut(s)	411, 642, 738, 882, 894, 1812, 2361, 2479
StuI	AGGCCT	1 cut(s)	2359
StyD4I	CCNGG	4 cut(s)	275, 1052, 1105, 2354
StyI	CCWWGG	3 cut(s)	660, 1149, 1177
TaaI	ACNGT	2 cut(s)	215, 500
TaiI	ACGT	2 cut(s)	829, 1969
TaqI	TCGA	8 cut(s)	17, 85, 133, 149, 671, 1165, 1302, 2410
TaqII	GACCGA	2 cut(s)	60, 69
TatI	WGTACW	2 cut(s)	740, 941
TauI	GCSGC	2 cut(s)	96, 205
TfiI	GAWTC	8 cut(s)	146, 398, 493, 596, 608, 811, 1316, 2149
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	185, 1216
TseI	GCWGC	7 cut(s)	90, 872, 1049, 1511, 1955, 1958, 2402
Tsp45I	GTSAC	2 cut(s)	185, 1216
TspGWI	ACGGA	1 cut(s)	1136
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	139, 273
VspI	ATTAAT	1 cut(s)	1350
XapI	RAATTY	4 cut(s)	1079, 1284, 1448, 1531
XspI	CTAG	8 cut(s)	411, 642, 738, 882, 894, 1812, 2361, 2479
Zsp2I	ATGCAT	1 cut(s)	2393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.