Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Reverse (-)

33579212 .. 33583804

Gene Structure 4593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG163200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGCTCCTGGGACAACTGGGTCGAACACTCCCTTGACAAACTTGAACGCCTGCAACTCCTCCGGTCTCTCCGACCCATCTACTTCCGCAATGAACCTCAAAAACCCACCACCACCATCGAAGATGACGACCTCCAAGTCTTCCACCAAATGCAGCTCTGGGACCGTTCCTCCGTGGAGGTCCACATTCCCGAATCAATGTTCCAGAAATGGCTCAGTGACATCCCCAGTTCCGGAGATGAGGAAGATACCCGGAGATTCAGAAAGCTGTTGTTGTTCTCTGGAAATGATTATCTGGGCTTGAGTTCACATCCCACCATTGGAAATGCTGCTGCTAAGGTAAGGATTGGAGGAAGATTGATCAACAGTTGGAGCATCGCTCTGTTGACAGCGGATCCTGAAGGATTGGAGCTTATCATTCCTGATTGCTGTGAGGATGAAGAATTGGTTCCAGAAAAAACATACTTTGGTGGAGAGGAGGGTGTTGGAGAATATATTTGGTACAGAACGAAGAATAAGCTTCATGGATCTGCATTGCTGGATATATCTAATTTGAATGAAGATGTTGGTATATGCAGTAAAACACTAACATATAAACCAGCACTTGAAGGTGTTGGGGCTTATTTGGCCCTATATTGGGTGCCCACCCGTAAAGATGGTAAATGTGGGAAGGCACTAGTTGCAATTTGCAACTCTCCGGTTGCACCAGCTCTTCCTGTGGTTTCTAATGTTCGTGTGAAGAAGGTGTCTCTGTCTGTTTATTCTGGGGAAGGAGAGTATTTTGGTGGATATGAGGGATGGAGCCTTTTTAGCTGGTATAGAGAAACTAATGATGGAACTATCAGTCTTATTAATGGGGCCAACTCTCGAACTTATGAAGTCACTGATGCAGACTACAACTGCCGTTTATTGTTTGGATATACACCAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGGTAAAAAGTTGACCATACCAGTGCTTCTGATCATTGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

344

Amino Acids

38.58

Weight (kDa)

4.97

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	139 - 227	1e-15	AIR9 A9 domain
IG_AIR9	PF23197	252 - 320	1.2e-17	AIR9 A9 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	20, 137
AccB1I	GGYRCC	1 cut(s)	640
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	2 cut(s)	88, 392
AclWI	GGATC	3 cut(s)	389, 402, 535
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	4 cut(s)	233, 320, 636, 637
AgsI	TTSAA	3 cut(s)	47, 556, 608
AhlI	ACTAGT	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	8, 988
AluBI	AGCT	6 cut(s)	157, 268, 412, 520, 710, 813
AluI	AGCT	6 cut(s)	157, 268, 412, 520, 710, 813
Alw26I	GTCTC	2 cut(s)	72, 753
AlwI	GGATC	3 cut(s)	389, 402, 535
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	2 cut(s)	627, 858
ApeKI	GCWGC	3 cut(s)	154, 329, 332
AseI	ATTAAT	1 cut(s)	852
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	4 cut(s)	163, 181, 628, 858
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	962
AvaII	GGWCC	2 cut(s)	163, 181
BaeGI	GKGCMC	1 cut(s)	645
BamHI	GGATCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	166, 316, 319
BccI	CCATC	5 cut(s)	86, 125, 650, 792, 827
BceAI	ACGGC	1 cut(s)	888
BciT130I	CCWGG	2 cut(s)	10, 990
BclI	TGATCA	2 cut(s)	360, 1020
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	72, 753
BcuI	ACTAGT	1 cut(s)	676
BfaI	CTAG	1 cut(s)	677
BisI	GCNGC	3 cut(s)	155, 330, 333
BlsI	GCNGC	3 cut(s)	156, 331, 334
Bme1390I	CCNGG	3 cut(s)	10, 253, 990
Bme18I	GGWCC	2 cut(s)	163, 181
BmgT120I	GGNCC	4 cut(s)	163, 181, 628, 858
BmiI	GGNNCC	7 cut(s)	7, 164, 396, 450, 642, 803, 859
BmrFI	CCNGG	3 cut(s)	10, 253, 990
BmrI	ACTGGG	2 cut(s)	28, 222
BmsI	GCATC	2 cut(s)	384, 877
BmuI	ACTGGG	2 cut(s)	28, 222
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	9, 174
BsaWI	WCCGGW	3 cut(s)	63, 233, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 320, 636, 637
Bse1I	ACTGG	4 cut(s)	23, 228, 926, 1010
Bse3DI	GCAATG	2 cut(s)	97, 533
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	10, 990
BseDI	CCNNGG	2 cut(s)	9, 174
BseGI	GGATG	4 cut(s)	222, 310, 442, 803
BseLI	CCNNNNNNNGG	4 cut(s)	233, 320, 636, 637
BseMI	GCAATG	2 cut(s)	97, 533
BseMII	CTCAG	3 cut(s)	229, 947, 957
BseNI	ACTGG	4 cut(s)	23, 228, 926, 1010
BseRI	GAGGAG	2 cut(s)	50, 491
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	3 cut(s)	166, 316, 319
BshFI	GGCC	2 cut(s)	629, 860
BshNI	GGYRCC	1 cut(s)	640
BsiSI	CCGG	4 cut(s)	64, 234, 253, 698
BslFI	GGGAC	2 cut(s)	26, 176
BslI	CCNNNNNNNGG	4 cut(s)	233, 320, 636, 637
BsmAI	GTCTC	2 cut(s)	72, 753
BsmFI	GGGAC	2 cut(s)	26, 176
BsnI	GGCC	2 cut(s)	629, 860
Bso31I	GGTCTC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	8, 645
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	360, 394, 527, 1020
BspACI	CCGC	2 cut(s)	88, 392
BspANI	GGCC	2 cut(s)	629, 860
BspCNI	CTCAG	3 cut(s)	228, 948, 958
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	7 cut(s)	7, 164, 396, 450, 642, 803, 859
BspPI	GGATC	3 cut(s)	389, 402, 535
BspQI	GCTCTTC	1 cut(s)	717
BspT107I	GGYRCC	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	97, 533
BsrI	ACTGG	4 cut(s)	23, 228, 926, 1010
BssECI	CCNNGG	2 cut(s)	9, 174
BssMI	GATC	4 cut(s)	360, 394, 527, 1020
Bst2UI	CCWGG	2 cut(s)	10, 990
Bst4CI	ACNGT	2 cut(s)	167, 368
Bst6I	CTCTTC	1 cut(s)	717
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	215, 336, 956, 966
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	222, 310, 442, 803
BstKTI	GATC	4 cut(s)	363, 397, 530, 1023
BstMAI	GTCTC	2 cut(s)	72, 753
BstMBI	GATC	4 cut(s)	360, 394, 527, 1020
BstMWI	GCNNNNNNNGC	3 cut(s)	626, 680, 810
BstNI	CCWGG	2 cut(s)	10, 990
BstSCI	CCNGG	3 cut(s)	8, 251, 988
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	3 cut(s)	166, 316, 319
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	394, 527
BstYI	RGATCY	2 cut(s)	394, 527
BsuRI	GGCC	2 cut(s)	629, 860
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	4 cut(s)	222, 310, 442, 803
BtsIMutI	CAGTG	4 cut(s)	223, 882, 948, 1017
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	163, 181, 628, 858
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	1 cut(s)	524
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	4 cut(s)	215, 336, 956, 966
DpnI	GATC	4 cut(s)	362, 396, 529, 1022
DpnII	GATC	4 cut(s)	360, 394, 527, 1020
DrdI	GACNNNNNNGTC	2 cut(s)	20, 137
DseDI	GACNNNNNNGTC	2 cut(s)	20, 137
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	163, 181
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	8, 988
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	527
FaqI	GGGAC	2 cut(s)	26, 176
FatI	CATG	1 cut(s)	523
FbaI	TGATCA	2 cut(s)	360, 1020
Fnu4HI	GCNGC	3 cut(s)	155, 330, 333
FokI	GGATG	4 cut(s)	209, 297, 449, 810
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	155, 330, 333
FspBI	CTAG	1 cut(s)	677
GluI	GCNGC	3 cut(s)	155, 330, 333
HaeIII	GGCC	2 cut(s)	629, 860
HapII	CCGG	4 cut(s)	64, 234, 253, 698
Hin1II	CATG	1 cut(s)	527
HincII	GTYRAC	2 cut(s)	387, 1002
HindII	GTYRAC	2 cut(s)	387, 1002
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	3 cut(s)	194, 258, 938
HpaII	CCGG	4 cut(s)	64, 234, 253, 698
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	5 cut(s)	184, 308, 387, 953, 1002
Hpy188I	TCNGA	5 cut(s)	74, 263, 937, 967, 1020
Hpy188III	TCNNGA	8 cut(s)	191, 205, 234, 282, 398, 422, 452, 867
Hpy8I	GTNNAC	5 cut(s)	184, 308, 387, 953, 1002
HpyAV	CCTTC	5 cut(s)	395, 602, 664, 736, 764
HpyCH4III	ACNGT	2 cut(s)	167, 368
HpyCH4V	TGCA	8 cut(s)	55, 154, 533, 576, 683, 690, 704, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	626, 680, 810
HpyF3I	CTNAG	4 cut(s)	215, 336, 956, 966
Hsp92II	CATG	1 cut(s)	527
Kpn2I	TCCGGA	1 cut(s)	233
Ksp22I	TGATCA	2 cut(s)	360, 1020
Kzo9I	GATC	4 cut(s)	360, 394, 527, 1020
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	4 cut(s)	11, 372, 409, 801
Lsp1109I	GCAGC	3 cut(s)	166, 316, 319
LweI	GCATC	2 cut(s)	384, 877
MaeI	CTAG	1 cut(s)	677
MaeIII	GTNAC	2 cut(s)	218, 880
MalI	GATC	4 cut(s)	362, 396, 529, 1022
MboI	GATC	4 cut(s)	360, 394, 527, 1020
MflI	RGATCY	2 cut(s)	394, 527
MhlI	GDGCHC	2 cut(s)	8, 645
MluCI	AATT	3 cut(s)	443, 550, 684
MmeI	TCCRAC	3 cut(s)	97, 350, 466
MroI	TCCGGA	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	852
MslI	CAYNNNNRTG	1 cut(s)	1010
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	4 cut(s)	64, 234, 253, 698
MspR9I	CCNGG	3 cut(s)	10, 253, 990
MvaI	CCWGG	2 cut(s)	10, 990
MwoI	GCNNNNNNNGC	3 cut(s)	626, 680, 810
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	4 cut(s)	360, 394, 527, 1020
NlaIII	CATG	1 cut(s)	527
NlaIV	GGNNCC	7 cut(s)	7, 164, 396, 450, 642, 803, 859
NmuCI	GTSAC	2 cut(s)	218, 880
PciSI	GCTCTTC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	194, 258, 938
PkrI	GCNGC	3 cut(s)	156, 331, 334
PshBI	ATTAAT	1 cut(s)	852
Psp6I	CCWGG	2 cut(s)	8, 988
PspGI	CCWGG	2 cut(s)	8, 988
PspN4I	GGNNCC	7 cut(s)	7, 164, 396, 450, 642, 803, 859
PspPI	GGNCC	4 cut(s)	163, 181, 628, 858
PsuI	RGATCY	2 cut(s)	394, 527
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	1010
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	852
SatI	GCNGC	3 cut(s)	155, 330, 333
Sau3AI	GATC	4 cut(s)	360, 394, 527, 1020
Sau96I	GGNCC	4 cut(s)	163, 181, 628, 858
ScrFI	CCNGG	3 cut(s)	10, 253, 990
SduI	GDGCHC	2 cut(s)	8, 645
SfaNI	GCATC	2 cut(s)	384, 877
SinI	GGWCC	2 cut(s)	163, 181
SmiMI	CAYNNNNRTG	1 cut(s)	1010
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
SpeI	ACTAGT	1 cut(s)	676
Sse9I	AATT	3 cut(s)	443, 550, 684
SsiI	CCGC	2 cut(s)	88, 392
SspMI	CTAG	1 cut(s)	677
StyD4I	CCNGG	3 cut(s)	8, 251, 988
TaaI	ACNGT	2 cut(s)	167, 368
TaqI	TCGA	3 cut(s)	24, 120, 868
TasI	AATT	3 cut(s)	443, 550, 684
TfiI	GAWTC	3 cut(s)	194, 258, 938
Tru1I	TTAA	1 cut(s)	852
Tru9I	TTAA	1 cut(s)	852
TscAI	CASTG	4 cut(s)	223, 889, 948, 1017
TseFI	GTSAC	2 cut(s)	218, 880
TseI	GCWGC	3 cut(s)	154, 329, 332
Tsp45I	GTSAC	2 cut(s)	218, 880
TspDTI	ATGAA	5 cut(s)	108, 453, 512, 573, 891
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	4 cut(s)	223, 889, 948, 1017
VpaK11BI	GGWCC	2 cut(s)	163, 181
VspI	ATTAAT	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.