Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Forward (+)

22716739 .. 22719056

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGTGGAGAGGAGGCATAAGAGGAAAGAGAGGGAGATGAGTGAGGGTAGAGATGGCGGTGTGGATGAGTCTGAAGATTCTAAGAGAGCTAGGGGTTTGGATGAGAGGAAAGAGAGGAAGCGATTTGATGACCGCCGAGTAAAGGAAGAAGAGGATGCTGGAGAATTGGAAAGGAGCACTGAAGGGAATGTGATTCACAGTGAGGTTAAGGTTAAGAAAGAAGAATTGGAGGATGATGAGGGCTCCACTACCACCCAAAATGGGGGTGCTCCGTTAGACAAAGCAGCCAATGCTAGTTCAAATGCTAGCGCAAACTTGGGATTGAAGGATGGGATGCAACCTCCATCTGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTGCAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTGGCAACAGATGTTGTTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTAGTCAATGTGACTAAACCAAACAACCTCAGCACTTTAAAGGTGTGTTACTATTCTACCTGTCAGACTGTTGCCTCTTATATAGTGGATATTTATTTTAATGTTCTTCTGGAGGTTGAGAACAAGTATATTACTGTTGAGGAGCTGAAGCTACACAACAAGCCTGGGGACCTATGGATCTCTATCCAGGGCAAGATTTACAATGTCTCAGATTGGGTTCATGATCACCCAAGTGGAGCTACCATTTTGTATGATTTGGGTGGCCAAGATGTTACTGATGGATTCATGGCATACCATCCTAGCACTGTGTGGAAGCGCCTAGGGAAGTACTTCAATGGGTATCATCTCAAGGATTTCGAGATCTCAGAGGCGTCCAAGGACTATAGGAAGCTTCATGCTGAGATAACGCAGATGGGTTTGTTCGAAAACAAAGGGCATGGGGCTCTTTACAATATTACAACTATTGTTGTTTTGCTTAACCTTGTTGTTTATGGTCATGTCAAGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0030148 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0050896 GO:0051716 GO:0052631 GO:0055114 GO:0070417 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_desaturase

Protein Analysis

346

Amino Acids

38.46

Weight (kDa)

5.7

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	222 - 291	9.6e-20	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 133
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	793
AcuI	CTGAAG	3 cut(s)	93, 201, 698
AcyI	GRCGYC	1 cut(s)	902
AdeI	CACNNNGTG	1 cut(s)	840
AfaI	GTAC	2 cut(s)	355, 860
AfiI	CCNNNNNNNGG	5 cut(s)	142, 261, 262, 507, 508
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	300, 325, 865
AjnI	CCWGG	2 cut(s)	694, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AleI	CACNNNNGTG	1 cut(s)	762
AluBI	AGCT	6 cut(s)	89, 437, 676, 682, 770, 922
AluI	AGCT	6 cut(s)	89, 437, 676, 682, 770, 922
Alw21I	GWGCWC	2 cut(s)	179, 271
Alw26I	GTCTC	1 cut(s)	742
AlwI	GGATC	1 cut(s)	716
AoxI	GGCC	2 cut(s)	477, 793
ApeKI	GCWGC	1 cut(s)	284
AsiGI	ACCGGT	1 cut(s)	410
Asp700I	GAANNNNTTC	1 cut(s)	860
AspA2I	CCTAGG	1 cut(s)	850
AspLEI	GCGC	2 cut(s)	311, 849
AspS9I	GGNCC	2 cut(s)	478, 700
AsuHPI	GGTGA	2 cut(s)	434, 749
AsuII	TTCGAA	1 cut(s)	954
AsuNHI	GCTAGC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	700
AvrII	CCTAGG	1 cut(s)	850
BalI	TGGCCA	1 cut(s)	795
BanII	GRGCYC	2 cut(s)	245, 976
Bbv12I	GWGCWC	2 cut(s)	179, 271
BbvCI	CCTCAGC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	7 cut(s)	47, 323, 352, 388, 803, 834, 937
BceAI	ACGGC	1 cut(s)	1021
BciT130I	CCWGG	2 cut(s)	696, 719
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	742
BfaI	CTAG	5 cut(s)	90, 294, 306, 831, 851
BfmI	CTRYAG	1 cut(s)	913
BfoI	RGCGCY	1 cut(s)	850
BglII	AGATCT	1 cut(s)	891
BisI	GCNGC	1 cut(s)	285
BlnI	CCTAGG	1 cut(s)	850
BlsI	GCNGC	1 cut(s)	286
BmcAI	AGTACT	1 cut(s)	860
Bme1390I	CCNGG	2 cut(s)	696, 719
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	478, 700
BmiI	GGNNCC	3 cut(s)	244, 480, 701
BmrFI	CCNGG	2 cut(s)	696, 719
BmsI	GCATC	4 cut(s)	145, 324, 376, 487
BmtI	GCTAGC	1 cut(s)	309
BpmI	CTGGAG	2 cut(s)	180, 662
Bpu10I	CCTNAGC	1 cut(s)	560
Bpu14I	TTCGAA	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	863
BsaBI	GATNNNNATC	1 cut(s)	713
BsaHI	GRCGYC	1 cut(s)	902
BsaJI	CCNNGG	6 cut(s)	474, 502, 695, 718, 850, 906
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 261, 262, 507, 508
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	696, 719
BseDI	CCNNGG	6 cut(s)	474, 502, 695, 718, 850, 906
BseGI	GGATG	8 cut(s)	70, 106, 160, 238, 334, 339, 367, 826
BseJI	GATNNNNATC	1 cut(s)	713
BseLI	CCNNNNNNNGG	5 cut(s)	142, 261, 262, 507, 508
BseMII	CTCAG	5 cut(s)	476, 574, 753, 909, 921
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	2 cut(s)	25, 686
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	2 cut(s)	479, 795
BshTI	ACCGGT	1 cut(s)	410
BsiHKAI	GWGCWC	2 cut(s)	179, 271
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	5 cut(s)	142, 261, 262, 507, 508
BsmAI	GTCTC	1 cut(s)	742
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	479, 795
Bsp119I	TTCGAA	1 cut(s)	954
Bsp1286I	GDGCHC	4 cut(s)	179, 245, 271, 976
Bsp143I	GATC	3 cut(s)	708, 754, 891
BspACI	CCGC	2 cut(s)	57, 133
BspANI	GGCC	2 cut(s)	479, 795
BspCNI	CTCAG	5 cut(s)	475, 573, 752, 908, 922
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	3 cut(s)	244, 480, 701
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	716
BspT104I	TTCGAA	1 cut(s)	954
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	6 cut(s)	474, 502, 695, 718, 850, 906
BssMI	GATC	3 cut(s)	708, 754, 891
BssNI	GRCGYC	1 cut(s)	902
BssT1I	CCWWGG	4 cut(s)	474, 502, 850, 906
Bst2UI	CCWGG	2 cut(s)	696, 719
Bst4CI	ACNGT	4 cut(s)	200, 601, 667, 838
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	902
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	954
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	6 cut(s)	81, 462, 560, 739, 895, 930
BstF5I	GGATG	8 cut(s)	70, 106, 160, 238, 334, 339, 367, 826
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	2 cut(s)	311, 849
BstKTI	GATC	3 cut(s)	711, 757, 894
BstMAI	GTCTC	1 cut(s)	742
BstMBI	GATC	3 cut(s)	708, 754, 891
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	696, 719
BstSCI	CCNGG	2 cut(s)	694, 717
BstSFI	CTRYAG	1 cut(s)	913
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	708, 891
BstYI	RGATCY	2 cut(s)	708, 891
BsuRI	GGCC	2 cut(s)	479, 795
BtsCI	GGATG	8 cut(s)	70, 106, 160, 238, 334, 339, 367, 826
BtsIMutI	CAGTG	3 cut(s)	177, 205, 834
Cac8I	GCNNGC	1 cut(s)	307
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	2 cut(s)	311, 849
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	478, 700
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	2 cut(s)	354, 859
CspAI	ACCGGT	1 cut(s)	410
CviAII	CATG	6 cut(s)	524, 752, 817, 926, 968, 1028
CviQI	GTAC	2 cut(s)	354, 859
DdeI	CTNAG	6 cut(s)	81, 462, 560, 739, 895, 930
DpnI	GATC	3 cut(s)	710, 756, 893
DpnII	GATC	3 cut(s)	708, 754, 891
DraI	TTTAAA	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	840
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	4 cut(s)	474, 502, 850, 906
Eco24I	GRGCYC	2 cut(s)	245, 976
Eco47I	GGWCC	1 cut(s)	700
Eco57I	CTGAAG	3 cut(s)	93, 201, 698
EcoO109I	RGGNCCY	2 cut(s)	478, 700
EcoRII	CCWGG	2 cut(s)	694, 717
EcoT14I	CCWWGG	4 cut(s)	474, 502, 850, 906
EcoT38I	GRGCYC	2 cut(s)	245, 976
ErhI	CCWWGG	4 cut(s)	474, 502, 850, 906
FaeI	CATG	6 cut(s)	527, 755, 820, 929, 971, 1031
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	6 cut(s)	523, 751, 816, 925, 967, 1027
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	8 cut(s)	77, 113, 167, 245, 341, 346, 354, 813
FriOI	GRGCYC	2 cut(s)	245, 976
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	5 cut(s)	90, 294, 306, 831, 851
GlaI	GCGC	2 cut(s)	310, 848
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	180, 662
HaeII	RGCGCY	1 cut(s)	850
HaeIII	GGCC	2 cut(s)	479, 795
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	891
HhaI	GCGC	2 cut(s)	311, 849
Hin1I	GRCGYC	1 cut(s)	902
Hin1II	CATG	6 cut(s)	527, 755, 820, 929, 971, 1031
Hin6I	GCGC	2 cut(s)	309, 847
HinP1I	GCGC	2 cut(s)	309, 847
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	4 cut(s)	68, 77, 193, 813
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	2 cut(s)	434, 749
Hpy188I	TCNGA	6 cut(s)	73, 417, 465, 597, 742, 898
Hpy188III	TCNNGA	3 cut(s)	641, 752, 889
HpyAV	CCTTC	3 cut(s)	176, 319, 501
HpyCH4III	ACNGT	4 cut(s)	200, 601, 667, 838
HpyCH4V	TGCA	4 cut(s)	337, 350, 367, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	6 cut(s)	81, 462, 560, 739, 895, 930
Hsp92I	GRCGYC	1 cut(s)	902
Hsp92II	CATG	6 cut(s)	527, 755, 820, 929, 971, 1031
HspAI	GCGC	2 cut(s)	309, 847
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	708, 754, 891
LmnI	GCTCC	5 cut(s)	174, 248, 274, 673, 767
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	4 cut(s)	145, 324, 376, 487
MaeI	CTAG	5 cut(s)	90, 294, 306, 831, 851
MaeIII	GTNAC	3 cut(s)	541, 578, 802
MalI	GATC	3 cut(s)	710, 756, 893
MboI	GATC	3 cut(s)	708, 754, 891
MboII	GAAGA	6 cut(s)	86, 158, 161, 233, 479, 629
MflI	RGATCY	2 cut(s)	708, 891
MhlI	GDGCHC	4 cut(s)	179, 245, 271, 976
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	3 cut(s)	164, 224, 387
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	795
MroXI	GAANNNNTTC	1 cut(s)	860
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	5 cut(s)	207, 213, 569, 630, 1008
MslI	CAYNNNNRTG	2 cut(s)	528, 762
Msp20I	TGGCCA	1 cut(s)	795
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	2 cut(s)	696, 719
MvaI	CCWGG	2 cut(s)	696, 719
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	3 cut(s)	708, 754, 891
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	6 cut(s)	527, 755, 820, 929, 971, 1031
NlaIV	GGNNCC	3 cut(s)	244, 480, 701
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	954
OliI	CACNNNNGTG	1 cut(s)	762
PagI	TCATGA	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	3 cut(s)	77, 193, 813
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	2 cut(s)	694, 717
PspGI	CCWGG	2 cut(s)	694, 717
PspN4I	GGNNCC	3 cut(s)	244, 480, 701
PspPI	GGNCC	2 cut(s)	478, 700
PspPPI	RGGWCCY	1 cut(s)	700
PsuI	RGATCY	2 cut(s)	708, 891
RsaI	GTAC	2 cut(s)	355, 860
RsaNI	GTAC	2 cut(s)	354, 859
RseI	CAYNNNNRTG	2 cut(s)	528, 762
SaqAI	TTAA	5 cut(s)	207, 213, 569, 630, 1008
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	3 cut(s)	708, 754, 891
Sau96I	GGNCC	2 cut(s)	478, 700
ScaI	AGTACT	1 cut(s)	860
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	696, 719
SduI	GDGCHC	4 cut(s)	179, 245, 271, 976
SfaNI	GCATC	4 cut(s)	145, 324, 376, 487
SfcI	CTRYAG	1 cut(s)	913
SfuI	TTCGAA	1 cut(s)	954
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	2 cut(s)	528, 762
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
Sse9I	AATT	3 cut(s)	164, 224, 387
SsiI	CCGC	2 cut(s)	57, 133
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	5 cut(s)	90, 294, 306, 831, 851
StyD4I	CCNGG	2 cut(s)	694, 717
StyI	CCWWGG	4 cut(s)	474, 502, 850, 906
TaaI	ACNGT	4 cut(s)	200, 601, 667, 838
TaqI	TCGA	3 cut(s)	490, 888, 954
TasI	AATT	3 cut(s)	164, 224, 387
TatI	WGTACW	2 cut(s)	353, 858
TfiI	GAWTC	3 cut(s)	77, 193, 813
Tru1I	TTAA	5 cut(s)	207, 213, 569, 630, 1008
Tru9I	TTAA	5 cut(s)	207, 213, 569, 630, 1008
TscAI	CASTG	3 cut(s)	184, 205, 841
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	5 cut(s)	447, 534, 740, 805, 914
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	3 cut(s)	184, 205, 841
VpaK11BI	GGWCC	1 cut(s)	700
XmaJI	CCTAGG	1 cut(s)	850
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	5 cut(s)	90, 294, 306, 831, 851
ZrmI	AGTACT	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.