Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Reverse (-)

56765021 .. 56769325

Gene Structure 4305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGGAGAAAGAGAAATCGAGCAAGCGCTTCCGAGACGAACGCGACCGACGAGACCGAGACCGAGACCGGGACCGGGACCATCACAAGCATCGCAGCGGCCGCGACGCTTCCGATGACCACCACCGCCAACACCGCGCTCGATCGGACCGCGATTCGAAGCCCGAGCGCTCCCACGACCACAGATCTCGCCGTGACAGGTCGCCGGAGCAGCGGGACGACCGGGAAGCGTCGCGCGACCACCGCGAGCGGTCGTACGAGAGGGAAGGGAGTAGAGAGAGGTCCAGGCACCGCGAAGTGAAGCGGGAGAGGTCGGAGGAGGGAGAGGATATGGTGGAGAGGAGGCATAAGAGGAAAGAGAGGGAGAGGAGTGAGGGTAGAGATGGCGGTGTGGATGAGTCTGAAGATTCTAAGAGAGCTAGGGGTTTGGATGAGAGGAAGCGATTTGATGACCGCCGAGTAAAGGAAGAAGAGGATGCTGGAGAATTGGAAGGGAATGTGATTCACAGTGAGGTTAAGGTTAAGAAAGAAGAATTGGAGGATGATGAGGGCTTCACTACCACCCAAAATGGGGGTGCTCCGGTGGGTAATGGTGCCAGTCTGGATTCTACCATGGAATCAAGGGTTGTGCCTGAGACCTCTTCCCCCCCTAGTCATCCCCATCCTACCAAGGTATATTCGATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCTTCAACTGCTGGAAGAAGTGGAAATCTACCTCCTGGTGAGTTAGATAAAATTAAGAATCTTCTGGCGAAACGTAAGGAATTGGCTGACAAGCTGAACAAAACGAAGCGCAAACTTGGGATTGAGGATGGGATGCAACCTCCATCTGCAAGTACAGGAATGTTGCATCCCCCTGTGCCATCAACAATTAGTGGTACAAGTGGAATGACCGGTCTGACTGGTGAAAAATATGAAGCTGTAAAACTTGCACAGGAGCGGGCTGCCAGGATGGGCTTTCGCCATGACCCAGAATTTGCTCCTGTTATAAACTTGTTCCCAGGACAGGTGGCAACAGATGTTGTTCCCCCTCAGAAGCCTACCAAGGCCCCTGTTCTTCGACTTGATGCCCTTGGAAGGGAAATAGATGAACATGGAAATGTGGTCAATGTGACTAAACCAAACAACCTCAGCACTTTAAAGGTCAACATTAACAAACAGAAGAAAGACGCATTCCAAATTCTTAAACCTGAAGTCGATATGGATCCTGAATCAAATCCTTTTTTTGACCCGAAGATGGGCATTAATATGACGAAGATTATGAGGCCAAAGAGGATGAACTTCCAGTTTGTAGAGGAAGGGAAGTGGTCAAGAGATGCTGAACATATGAAGTTGAAGAGTAAATTTGGGGAATTACAAGCAAAAGAGCATAGGGCGAAGCAGGCCCAGTTGGCAAAGGCAAAGGCAGCACCTGATACAAATCCAAATTTGATAGAGGTAGCAGAAAGAGTCATCACCAAAGAAAAACCGAAGGATCCAATTCCTGAAGTTGAGTGGTGGGATGTGTCCTTTTTACAATCTGGTACTTATGGTGAGCTTGTTGATGGTAGAATACCTGAAGACAGATTAAAGTTGGACAAAATCACCATCTATGTTGAACATCCTCAGCCCATTGAGCCCCCTGTGGAGCCAGCTCCTCCGCCACCTCAACCATTAAAGTTGACCAAGAAAGAGCAGAAAAAACTACGCACACAGCGTCGTCTTGCTAGAGAGAAAGATAAGCAGGAGATGATTAGACAGGGTCTGATCGAACCCCCCAAGTCAAAAGTTAAAATGAGTAATTTGATGAAAGTTCTTGGCTCCGAAGCAACCCAAGATCCAACCAGACTGGAGAAGGAGATCCGGAGTGCAGCTGCTGAACGTGAACAAGCTCATATAGACAGGAATATTGCCCGCAAGCTCACACCTGCTGAGCGCCGTGAGAAGAAAGAGAGGAAGCTTTTTGATGATCCAAATAATGTGGATACCATAGTCTCAGTTTATAAAATCAATGATCTATCTCATCCAAAGGCCCGCTTTAAGATTGATGTTAATGCCAGAGAGAATCGGCTGACTGGATGTGCTGTGATCTCAGATGGTATGAATGTTGTGGCTGTTGAAGGTGGAAGCAAATCTATCAAAAGGTACGCAAAGGTCATGCTTCGGCGCATAAACTGGGCTGAGGCTGTGAAAGAGGAGGAAGACGATGAAGAAGAAAATGATGATAAGCCTCCTAACAAGTGTGTCTTGGTGTGGCAAGGAAGTGTTGCCAGGCCTAGTTTCAATAGATTTTTGGTTCATGAATGCATGACTGAAGCTGCTGGTCGAAAGTTCTTTGCTGATGCTGGCGTTGCTCATTACTGGGATCTGGCAGTCAACTTTGCAGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

816

Amino Acids

93.16

Weight (kDa)

8.98

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP3	PF08572	431 - 660	1.8e-64	pre-mRNA processing factor 3 domain
Prp3_C	PF06544	684 - 809	2.8e-42	Small nuclear ribonucleoprotein Prp3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1064, 2058
AarI	CACCTGC	1 cut(s)	1990
Acc36I	ACCTGC	1 cut(s)	1990
AccB1I	GGYRCC	2 cut(s)	285, 590
AccBSI	CCGCTC	2 cut(s)	247, 1015
AccII	CGCG	8 cut(s)	42, 102, 135, 150, 232, 234, 243, 291
AccIII	TCCGGA	1 cut(s)	1917
AclWI	GGATC	8 cut(s)	1274, 1287, 1544, 1557, 1886, 1909, 2018, 2427
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	4 cut(s)	1049, 1254, 1418, 1501
AcuI	CTGAAG	5 cut(s)	420, 1287, 1581, 1653, 2388
AfaI	GTAC	6 cut(s)	254, 748, 913, 955, 1600, 2201
AfeI	AGCGCT	2 cut(s)	26, 167
AgeI	ACCGGT	1 cut(s)	968
AgsI	TTSAA	5 cut(s)	765, 1411, 1673, 2174, 2338
AjnI	CCWGG	5 cut(s)	281, 793, 1022, 1075, 2324
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	6 cut(s)	27, 45, 51, 57, 626, 2053
AlwI	GGATC	8 cut(s)	1274, 1287, 1544, 1557, 1886, 1909, 2018, 2427
AlwNI	CAGNNNCTG	3 cut(s)	1487, 1819, 1931
Ama87I	CYCGRG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	1917
Aor51HI	AGCGCT	2 cut(s)	26, 167
AoxI	GGCC	6 cut(s)	97, 1122, 1340, 1458, 2085, 2327
ApeKI	GCWGC	7 cut(s)	93, 208, 1019, 1481, 1925, 1928, 2372
ApoI	RAATTY	4 cut(s)	1049, 1254, 1418, 1501
ArsI	GACNNNNNNTTYG	2 cut(s)	1034, 1066
AseI	ATTAAT	1 cut(s)	1320
AsiGI	ACCGGT	1 cut(s)	968
AspLEI	GCGC	7 cut(s)	27, 137, 168, 234, 870, 1992, 2223
AspS9I	GGNCC	7 cut(s)	70, 76, 145, 279, 1123, 1459, 2086
AsuC2I	CCSGG	3 cut(s)	68, 74, 221
AsuHPI	GGTGA	5 cut(s)	809, 992, 1522, 1619, 1651
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	4 cut(s)	70, 76, 145, 279
BaeI	ACNNNNGTAYC	2 cut(s)	2031, 2064
BamHI	GGATCC	2 cut(s)	1279, 1549
BanI	GGYRCC	2 cut(s)	285, 590
BanII	GRGCYC	1 cut(s)	1695
BbsI	GAAGAC	2 cut(s)	1641, 2262
Bbv12I	GWGCWC	1 cut(s)	577
BbvCI	CCTCAGC	3 cut(s)	1205, 1680, 2235
BbvI	GCAGC	7 cut(s)	105, 220, 1006, 1493, 1915, 1937, 2359
BceAI	ACGGC	2 cut(s)	174, 1977
BciT130I	CCWGG	5 cut(s)	283, 795, 1024, 1077, 2326
BciVI	GTATCC	1 cut(s)	2032
BcnI	CCSGG	3 cut(s)	68, 74, 221
BcoDI	GTCTC	6 cut(s)	27, 45, 51, 57, 626, 2053
BfaI	CTAG	6 cut(s)	417, 648, 744, 1782, 2331, 2449
BfoI	RGCGCY	3 cut(s)	28, 169, 1993
BfuAI	ACCTGC	1 cut(s)	1990
BfuI	GTATCC	1 cut(s)	2032
BglI	GCCNNNNNGGC	1 cut(s)	1466
BglII	AGATCT	2 cut(s)	182, 719
BisI	GCNGC	9 cut(s)	94, 97, 100, 209, 1020, 1482, 1926, 1929, 2373
BlpI	GCTNAGC	1 cut(s)	1986
BlsI	GCNGC	9 cut(s)	95, 98, 101, 210, 1021, 1483, 1927, 1930, 2374
Bme1390I	CCNGG	8 cut(s)	68, 74, 221, 283, 795, 1024, 1077, 2326
Bme18I	GGWCC	4 cut(s)	70, 76, 145, 279
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	7 cut(s)	70, 76, 145, 279, 1123, 1459, 2086
BmiI	GGNNCC	9 cut(s)	71, 77, 287, 592, 1125, 1281, 1551, 1704, 1876
BmrFI	CCNGG	8 cut(s)	68, 74, 221, 283, 795, 1024, 1077, 2326
BmrI	ACTGGG	3 cut(s)	1456, 2239, 2425
BmsI	GCATC	7 cut(s)	97, 463, 882, 934, 1132, 1381, 2386
BmuI	ACTGGG	3 cut(s)	1456, 2239, 2425
BpiI	GAAGAC	2 cut(s)	1641, 2262
BpmI	CTGGAG	2 cut(s)	498, 1925
Bpu10I	CCTNAGC	3 cut(s)	1205, 1680, 2235
Bpu1102I	GCTNAGC	1 cut(s)	1986
Bpu14I	TTCGAA	1 cut(s)	155
BpuMI	CCSGG	3 cut(s)	68, 74, 221
BsaBI	GATNNNNATC	2 cut(s)	1278, 1494
BsaI	GGTCTC	4 cut(s)	45, 51, 57, 626
BsaJI	CCNNGG	5 cut(s)	609, 666, 1075, 1119, 1147
BsaWI	WCCGGW	3 cut(s)	577, 968, 1917
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bse118I	RCCGGY	1 cut(s)	968
Bse1I	ACTGG	8 cut(s)	594, 982, 1360, 1462, 1908, 2134, 2234, 2420
Bse8I	GATNNNNATC	2 cut(s)	1278, 1494
BseAI	TCCGGA	1 cut(s)	1917
BseBI	CCWGG	5 cut(s)	283, 795, 1024, 1077, 2326
BseDI	CCNNGG	5 cut(s)	609, 666, 1075, 1119, 1147
BseJI	GATNNNNATC	2 cut(s)	1278, 1494
BseMII	CTCAG	8 cut(s)	621, 1121, 1219, 1694, 1977, 2064, 2160, 2226
BseNI	ACTGG	8 cut(s)	594, 982, 1360, 1462, 1908, 2134, 2234, 2420
BseRI	GAGGAG	5 cut(s)	329, 352, 379, 1701, 2264
BseX3I	CGGCCG	1 cut(s)	97
BseXI	GCAGC	7 cut(s)	105, 220, 1006, 1493, 1915, 1937, 2359
BsgI	GTGCAG	1 cut(s)	1944
Bsh1236I	CGCG	8 cut(s)	42, 102, 135, 150, 232, 234, 243, 291
Bsh1285I	CGRYCG	5 cut(s)	46, 100, 143, 220, 251
BshFI	GGCC	6 cut(s)	99, 1124, 1342, 1460, 2087, 2329
BshNI	GGYRCC	2 cut(s)	285, 590
BshTI	ACCGGT	1 cut(s)	968
BsiEI	CGRYCG	5 cut(s)	46, 100, 143, 220, 251
BsiHKAI	GWGCWC	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	7 cut(s)	67, 73, 203, 220, 578, 969, 1918
BsiWI	CGTACG	1 cut(s)	252
BslFI	GGGAC	4 cut(s)	83, 89, 227, 769
BsmAI	GTCTC	6 cut(s)	27, 45, 51, 57, 626, 2053
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	4 cut(s)	83, 89, 227, 769
BsmI	GAATGC	2 cut(s)	1247, 2363
BsnI	GGCC	6 cut(s)	99, 1124, 1342, 1460, 2087, 2329
Bso31I	GGTCTC	4 cut(s)	45, 51, 57, 626
BsoBI	CYCGRG	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	577, 1695
Bsp13I	TCCGGA	1 cut(s)	1917
Bsp1720I	GCTNAGC	1 cut(s)	1986
Bsp19I	CCATGG	1 cut(s)	609
BspANI	GGCC	6 cut(s)	99, 1124, 1342, 1460, 2087, 2329
BspCNI	CTCAG	8 cut(s)	622, 1120, 1218, 1693, 1978, 2063, 2159, 2227
BspEI	TCCGGA	1 cut(s)	1917
BspFNI	CGCG	8 cut(s)	42, 102, 135, 150, 232, 234, 243, 291
BspHI	TCATGA	2 cut(s)	724, 2353
BspLI	GGNNCC	9 cut(s)	71, 77, 287, 592, 1125, 1281, 1551, 1704, 1876
BspMI	ACCTGC	1 cut(s)	1990
BspPI	GGATC	8 cut(s)	1274, 1287, 1544, 1557, 1886, 1909, 2018, 2427
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	2 cut(s)	285, 590
BspTNI	GGTCTC	4 cut(s)	45, 51, 57, 626
BsrBI	CCGCTC	2 cut(s)	247, 1015
BsrFI	RCCGGY	1 cut(s)	968
BsrI	ACTGG	8 cut(s)	594, 982, 1360, 1462, 1908, 2134, 2234, 2420
BssAI	RCCGGY	1 cut(s)	968
BssECI	CCNNGG	5 cut(s)	609, 666, 1075, 1119, 1147
BssT1I	CCWWGG	4 cut(s)	609, 666, 1119, 1147
Bst2UI	CCWGG	5 cut(s)	283, 795, 1024, 1077, 2326
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	3 cut(s)	462, 643, 1406
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	9 cut(s)	23, 245, 1017, 1458, 1707, 1969, 1973, 2089, 2401
BstDEI	CTNAG	9 cut(s)	408, 630, 1107, 1205, 1680, 1986, 2050, 2146, 2235
BstDSI	CCRYGG	1 cut(s)	609
BstFNI	CGCG	8 cut(s)	42, 102, 135, 150, 232, 234, 243, 291
BstH2I	RGCGCY	3 cut(s)	28, 169, 1993
BstHHI	GCGC	7 cut(s)	27, 137, 168, 234, 870, 1992, 2223
BstMAI	GTCTC	6 cut(s)	27, 45, 51, 57, 626, 2053
BstMCI	CGRYCG	5 cut(s)	46, 100, 143, 220, 251
BstMWI	GCNNNNNNNGC	9 cut(s)	99, 132, 208, 240, 1457, 1466, 1481, 1690, 2405
BstNI	CCWGG	5 cut(s)	283, 795, 1024, 1077, 2326
BstSCI	CCNGG	8 cut(s)	66, 72, 219, 281, 793, 1022, 1075, 2324
BstUI	CGCG	8 cut(s)	42, 102, 135, 150, 232, 234, 243, 291
BstV1I	GCAGC	7 cut(s)	105, 220, 1006, 1493, 1915, 1937, 2359
BstV2I	GAAGAC	2 cut(s)	1641, 2262
BstX2I	RGATCY	7 cut(s)	182, 719, 1279, 1549, 1891, 1914, 2419
BstYI	RGATCY	7 cut(s)	182, 719, 1279, 1549, 1891, 1914, 2419
BstZI	CGGCCG	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	2032
BsuRI	GGCC	6 cut(s)	99, 1124, 1342, 1460, 2087, 2329
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	511
BveI	ACCTGC	1 cut(s)	1990
Cac8I	GCNNGC	9 cut(s)	23, 245, 1017, 1458, 1707, 1969, 1973, 2089, 2401
CaiI	CAGNNNCTG	3 cut(s)	1487, 1819, 1931
CciI	TCATGA	2 cut(s)	724, 2353
CciNI	GCGGCCGC	1 cut(s)	97
CfoI	GCGC	7 cut(s)	27, 137, 168, 234, 870, 1992, 2223
Cfr10I	RCCGGY	1 cut(s)	968
Cfr13I	GGNCC	7 cut(s)	70, 76, 145, 279, 1123, 1459, 2086
CpoI	CGGWCCG	1 cut(s)	145
CseI	GACGC	4 cut(s)	113, 216, 1253, 1760
Csp6I	GTAC	6 cut(s)	253, 747, 912, 954, 1599, 2200
CspAI	ACCGGT	1 cut(s)	968
CspCI	CAANNNNNGTGG	2 cut(s)	2016, 2051
CspI	CGGWCCG	1 cut(s)	145
CviAII	CATG	8 cut(s)	610, 725, 734, 1040, 1169, 2212, 2354, 2362
CviQI	GTAC	6 cut(s)	253, 747, 912, 954, 1599, 2200
DdeI	CTNAG	9 cut(s)	408, 630, 1107, 1205, 1680, 1986, 2050, 2146, 2235
DraI	TTTAAA	1 cut(s)	1215
EaeI	YGGCCR	1 cut(s)	97
EagI	CGGCCG	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	462, 643, 1406
EarI	CTCTTC	3 cut(s)	462, 643, 1406
EciI	GGCGGA	1 cut(s)	1704
EclXI	CGGCCG	1 cut(s)	97
Eco130I	CCWWGG	4 cut(s)	609, 666, 1119, 1147
Eco147I	AGGCCT	1 cut(s)	2329
Eco24I	GRGCYC	1 cut(s)	1695
Eco31I	GGTCTC	4 cut(s)	45, 51, 57, 626
Eco47I	GGWCC	4 cut(s)	70, 76, 145, 279
Eco47III	AGCGCT	2 cut(s)	26, 167
Eco52I	CGGCCG	1 cut(s)	97
Eco57I	CTGAAG	5 cut(s)	420, 1287, 1581, 1653, 2388
Eco88I	CYCGRG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	1123
EcoRII	CCWGG	5 cut(s)	281, 793, 1022, 1075, 2324
EcoT14I	CCWWGG	4 cut(s)	609, 666, 1119, 1147
EcoT22I	ATGCAT	1 cut(s)	2363
EcoT38I	GRGCYC	1 cut(s)	1695
ErhI	CCWWGG	4 cut(s)	609, 666, 1119, 1147
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	8 cut(s)	613, 728, 737, 1043, 1172, 2215, 2357, 2365
FalI	AAGNNNNNCTT	4 cut(s)	2075, 2107, 2285, 2317
FaqI	GGGAC	4 cut(s)	83, 89, 227, 769
FatI	CATG	8 cut(s)	609, 724, 733, 1039, 1168, 2211, 2353, 2361
FauI	CCCGC	5 cut(s)	204, 294, 1008, 1976, 2096
FauNDI	CATATG	1 cut(s)	1401
Fnu4HI	GCNGC	9 cut(s)	94, 97, 100, 209, 1020, 1482, 1926, 1929, 2373
FriOI	GRGCYC	1 cut(s)	1695
Fsp4HI	GCNGC	9 cut(s)	94, 97, 100, 209, 1020, 1482, 1926, 1929, 2373
FspBI	CTAG	6 cut(s)	417, 648, 744, 1782, 2331, 2449
GlaI	GCGC	7 cut(s)	26, 136, 167, 233, 869, 1991, 2222
GluI	GCNGC	9 cut(s)	94, 97, 100, 209, 1020, 1482, 1926, 1929, 2373
GsuI	CTGGAG	2 cut(s)	498, 1925
HaeII	RGCGCY	3 cut(s)	28, 169, 1993
HaeIII	GGCC	6 cut(s)	99, 1124, 1342, 1460, 2087, 2329
HapII	CCGG	7 cut(s)	67, 73, 203, 220, 578, 969, 1918
HgaI	GACGC	4 cut(s)	113, 216, 1253, 1760
HhaI	GCGC	7 cut(s)	27, 137, 168, 234, 870, 1992, 2223
Hin1II	CATG	8 cut(s)	613, 728, 737, 1043, 1172, 2215, 2357, 2365
Hin6I	GCGC	7 cut(s)	25, 135, 166, 232, 868, 1990, 2221
HinP1I	GCGC	7 cut(s)	25, 135, 166, 232, 868, 1990, 2221
HincII	GTYRAC	3 cut(s)	1222, 1737, 2431
HindII	GTYRAC	3 cut(s)	1222, 1737, 2431
HindIII	AAGCTT	1 cut(s)	2012
HpaII	CCGG	7 cut(s)	67, 73, 203, 220, 578, 969, 1918
HphI	GGTGA	5 cut(s)	809, 992, 1522, 1619, 1651
Hpy166II	GTNNAC	4 cut(s)	1222, 1737, 1940, 2431
Hpy188III	TCNNGA	7 cut(s)	599, 725, 1283, 1386, 1559, 1918, 2354
Hpy8I	GTNNAC	4 cut(s)	1222, 1737, 1940, 2431
Hpy99I	CGWCG	4 cut(s)	51, 107, 232, 1776
HpyAV	CCTTC	7 cut(s)	257, 482, 1146, 1367, 1540, 1903, 2168
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	2 cut(s)	832, 1936
HpyCH4V	TGCA	7 cut(s)	895, 908, 925, 1007, 1925, 2361, 2438
HpyF10VI	GCNNNNNNNGC	9 cut(s)	99, 132, 208, 240, 1457, 1466, 1481, 1690, 2405
HpyF3I	CTNAG	9 cut(s)	408, 630, 1107, 1205, 1680, 1986, 2050, 2146, 2235
HpySE526I	ACGT	2 cut(s)	832, 1936
Hsp92II	CATG	8 cut(s)	613, 728, 737, 1043, 1172, 2215, 2357, 2365
HspAI	GCGC	7 cut(s)	25, 135, 166, 232, 868, 1990, 2221
Kpn2I	TCCGGA	1 cut(s)	1917
LmnI	GCTCC	8 cut(s)	173, 205, 580, 1012, 1060, 1702, 1714, 1880
Lsp1109I	GCAGC	7 cut(s)	105, 220, 1006, 1493, 1915, 1937, 2359
LweI	GCATC	7 cut(s)	97, 463, 882, 934, 1132, 1381, 2386
MaeI	CTAG	6 cut(s)	417, 648, 744, 1782, 2331, 2449
MaeII	ACGT	2 cut(s)	832, 1936
MaeIII	GTNAC	2 cut(s)	191, 1186
MbiI	CCGCTC	2 cut(s)	247, 1015
MflI	RGATCY	7 cut(s)	182, 719, 1279, 1549, 1891, 1914, 2419
MhlI	GDGCHC	2 cut(s)	577, 1695
MlyI	GAGTC	2 cut(s)	404, 1533
MmeI	TCCRAC	3 cut(s)	291, 1629, 1919
Mph1103I	ATGCAT	1 cut(s)	2363
MroI	TCCGGA	1 cut(s)	1917
MslI	CAYNNNNRTG	2 cut(s)	1173, 1322
MspA1I	CMGCKG	3 cut(s)	96, 211, 1928
MspI	CCGG	7 cut(s)	67, 73, 203, 220, 578, 969, 1918
MspR9I	CCNGG	8 cut(s)	68, 74, 221, 283, 795, 1024, 1077, 2326
Mva1269I	GAATGC	2 cut(s)	1247, 2363
MvaI	CCWGG	5 cut(s)	283, 795, 1024, 1077, 2326
MvnI	CGCG	8 cut(s)	42, 102, 135, 150, 232, 234, 243, 291
MwoI	GCNNNNNNNGC	9 cut(s)	99, 132, 208, 240, 1457, 1466, 1481, 1690, 2405
NciI	CCSGG	3 cut(s)	68, 74, 221
NcoI	CCATGG	1 cut(s)	609
NdeI	CATATG	1 cut(s)	1401
NlaIII	CATG	8 cut(s)	613, 728, 737, 1043, 1172, 2215, 2357, 2365
NlaIV	GGNNCC	9 cut(s)	71, 77, 287, 592, 1125, 1281, 1551, 1704, 1876
NmeAIII	GCCGAG	1 cut(s)	479
NmuCI	GTSAC	2 cut(s)	191, 1186
NotI	GCGGCCGC	1 cut(s)	97
NsiI	ATGCAT	1 cut(s)	2363
NspV	TTCGAA	1 cut(s)	155
PagI	TCATGA	2 cut(s)	724, 2353
PaqCI	CACCTGC	1 cut(s)	1990
PceI	AGGCCT	1 cut(s)	2329
PcsI	WCGNNNNNNNCGW	2 cut(s)	46, 1768
PctI	GAATGC	2 cut(s)	1247, 2363
PfeI	GAWTC	8 cut(s)	152, 404, 499, 602, 614, 817, 1286, 2119
Pfl23II	CGTACG	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	1815
PinAI	ACCGGT	1 cut(s)	968
PkrI	GCNGC	9 cut(s)	95, 98, 101, 210, 1021, 1483, 1927, 1930, 2374
Ple19I	CGATCG	1 cut(s)	143
PleI	GAGTC	2 cut(s)	403, 1532
PpsI	GAGTC	2 cut(s)	403, 1532
PshBI	ATTAAT	1 cut(s)	1320
PsiI	TTATAA	2 cut(s)	1064, 2058
Psp6I	CCWGG	5 cut(s)	281, 793, 1022, 1075, 2324
PspGI	CCWGG	5 cut(s)	281, 793, 1022, 1075, 2324
PspLI	CGTACG	1 cut(s)	252
PspN4I	GGNNCC	9 cut(s)	71, 77, 287, 592, 1125, 1281, 1551, 1704, 1876
PspPI	GGNCC	7 cut(s)	70, 76, 145, 279, 1123, 1459, 2086
PstNI	CAGNNNCTG	3 cut(s)	1487, 1819, 1931
PsuI	RGATCY	7 cut(s)	182, 719, 1279, 1549, 1891, 1914, 2419
PsyI	GACNNNGTC	1 cut(s)	1815
PvuI	CGATCG	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	1928
RsaI	GTAC	6 cut(s)	254, 748, 913, 955, 1600, 2201
RsaNI	GTAC	6 cut(s)	253, 747, 912, 954, 1599, 2200
RseI	CAYNNNNRTG	2 cut(s)	1173, 1322
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SatI	GCNGC	9 cut(s)	94, 97, 100, 209, 1020, 1482, 1926, 1929, 2373
Sau96I	GGNCC	7 cut(s)	70, 76, 145, 279, 1123, 1459, 2086
SchI	GAGTC	2 cut(s)	404, 1533
ScrFI	CCNGG	8 cut(s)	68, 74, 221, 283, 795, 1024, 1077, 2326
SduI	GDGCHC	2 cut(s)	577, 1695
SfaNI	GCATC	7 cut(s)	97, 463, 882, 934, 1132, 1381, 2386
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	4 cut(s)	70, 76, 145, 279
SmiMI	CAYNNNNRTG	2 cut(s)	1173, 1322
SseBI	AGGCCT	1 cut(s)	2329
SspI	AATATT	1 cut(s)	1963
SspMI	CTAG	6 cut(s)	417, 648, 744, 1782, 2331, 2449
StuI	AGGCCT	1 cut(s)	2329
StyD4I	CCNGG	8 cut(s)	66, 72, 219, 281, 793, 1022, 1075, 2324
StyI	CCWWGG	4 cut(s)	609, 666, 1119, 1147
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	2 cut(s)	835, 1939
TaqI	TCGA	8 cut(s)	17, 139, 155, 677, 1135, 1272, 1824, 2380
TaqII	GACCGA	3 cut(s)	60, 69, 75
TatI	WGTACW	2 cut(s)	746, 911
TauI	GCSGC	2 cut(s)	99, 102
TfiI	GAWTC	8 cut(s)	152, 404, 499, 602, 614, 817, 1286, 2119
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	191, 1186
TseI	GCWGC	7 cut(s)	93, 208, 1019, 1481, 1925, 1928, 2372
Tsp45I	GTSAC	2 cut(s)	191, 1186
TspRI	CASTG	1 cut(s)	511
Tth111I	GACNNNGTC	1 cut(s)	1815
VpaK11BI	GGWCC	4 cut(s)	70, 76, 145, 279
VspI	ATTAAT	1 cut(s)	1320
XapI	RAATTY	4 cut(s)	1049, 1254, 1418, 1501
XspI	CTAG	6 cut(s)	417, 648, 744, 1782, 2331, 2449
Zsp2I	ATGCAT	1 cut(s)	2363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.