Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003039

Physical Location & Seq

Genomic Coordinates Forward (+)

43790910 .. 43791197

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGGTTTTCCATTCCACGCTCCCCGTCTCCGCCATCATGGACGGGCTCGAGAAGATACGCCGTAAGGAAAACGGCATTCCGCTTGGCCAAATGCAGAGTGACAAGACCGTCGGCGGTGGAGACGACGCCTTCAACACTTTCTTCAATGAAACCGGAGCCGGATTGCACGTCCCCCGCGCCGTGTTCCTGGATCTGGAGCCCACCGTCATCAACGAGGAGGACCGGAACTTATCGGCTGTTCCACCCCGAGCAGCTCATCAGCAGCAAAGAGGACGCCGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

95

Amino Acids

10.51

Weight (kDa)

5.86

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28060 AT1G28060 AT1G28060 AT3G55930
fragaria_vesca	FvH4_2g04410 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820 FvH4_7g20820
malus_domestica	MD01G1117500.v1.1 MD07G1185000.v1.1
prunus_persica	Prupe.2G224900_v2.0.a1 Prupe.2G224900_v2.0.a1 Prupe.6G042200_v2.0.a1
pyrus_communis	pycom01g14520 pycom07g17720
rosa_chinensis	RchiOBHm_Chr1g0365041
rosa_laevigata	RLG00000027448
rosa_multiflora	Rmu_sc0002451.1_g000035
rosa_roxburghii	Rroxscaffold_4G00291520 Rroxscaffold_4G00291970
rosa_rugosa	Rorug01G0319100 Rorug01G0319200
rosa_samantha	Rh1AG188900 Rh1AG328200 Rh1BG289700 Rh1CG174500 Rh1CG306300 Rh1DG163200 Rh1DG321100 Rh4DG027000
rosa_wichuraiana	Rw1G029120 Rw2G017970 Rw3G016000 Rw4G013150 Rw5G015830 Rw5G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccII	CGCG	1 cut(s)	180
AciI	CCGC	5 cut(s)	33, 83, 117, 178, 280
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	88
AcyI	GRCGYC	2 cut(s)	129, 277
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	136, 148
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	34, 117
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	2 cut(s)	50, 249
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	254, 265
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	223
AvaI	CYCGRG	2 cut(s)	50, 249
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	90
BanII	GRGCYC	2 cut(s)	51, 204
BbvI	GCAGC	2 cut(s)	266, 277
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	3 cut(s)	48, 91, 167
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	34, 117
BisI	GCNGC	3 cut(s)	255, 266, 280
BlsI	GCNGC	3 cut(s)	256, 267, 281
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	2 cut(s)	50, 249
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	160, 201
BmrFI	CCNGG	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	218
BsaHI	GRCGYC	2 cut(s)	129, 277
BsaWI	WCCGGW	2 cut(s)	155, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	266, 277
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	50, 249
BsiSI	CCGG	3 cut(s)	156, 162, 226
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	34, 117
BsmBI	CGTCTC	2 cut(s)	34, 117
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	90
BsoBI	CYCGRG	2 cut(s)	50, 249
Bsp1286I	GDGCHC	2 cut(s)	51, 204
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	5 cut(s)	33, 83, 117, 178, 280
BspANI	GGCC	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	160, 201
BspPI	GGATC	1 cut(s)	201
BssMI	GATC	1 cut(s)	193
BssNI	GRCGYC	2 cut(s)	129, 277
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	112, 208
BstACI	GRCGYC	2 cut(s)	129, 277
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	34, 117
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	266, 277
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	137
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	6 cut(s)	49, 90, 161, 202, 239, 257
CviKI_1	RGCY	6 cut(s)	49, 90, 161, 202, 239, 257
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	51, 204
Eco47I	GGWCC	1 cut(s)	223
Eco88I	CYCGRG	2 cut(s)	50, 249
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	51, 204
Esp3I	CGTCTC	2 cut(s)	34, 117
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	3 cut(s)	255, 266, 280
FriOI	GRGCYC	2 cut(s)	51, 204
Fsp4HI	GCNGC	3 cut(s)	255, 266, 280
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	3 cut(s)	255, 266, 280
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	3 cut(s)	156, 162, 226
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	2 cut(s)	129, 277
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HpaII	CCGG	3 cut(s)	156, 162, 226
Hpy188III	TCNNGA	2 cut(s)	52, 197
Hpy99I	CGWCG	2 cut(s)	116, 131
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	112, 208
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	97, 169
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	129, 277
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	3 cut(s)	27, 158, 199
LpnPI	CCDG	6 cut(s)	169, 175, 176, 182, 203, 239
Lsp1109I	GCAGC	2 cut(s)	266, 277
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	67, 136
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	51, 204
MlsI	TGGCCA	1 cut(s)	90
MluNI	TGGCCA	1 cut(s)	90
MnlI	CCTC	3 cut(s)	211, 214, 266
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	90
MspI	CCGG	3 cut(s)	156, 162, 226
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	180
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	160, 201
NmuCI	GTSAC	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	50
PctI	GAATGC	1 cut(s)	78
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	256, 267, 281
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	160, 201
PspPI	GGNCC	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	193
SatI	GCNGC	3 cut(s)	255, 266, 280
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	51, 204
SetI	ASST	3 cut(s)	9, 174, 259
Sfr274I	CTCGAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SsiI	CCGC	5 cut(s)	33, 83, 117, 178, 280
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	112, 208
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	51
TauI	GCSGC	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	254, 265
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.