AT3G57320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003441
Physical Location & Seq
Forward (+)
21209916 .. 21211445
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57320.2

Sequence Viewer

Length: 309 bp
ATGGAGGATCATCATCATCTTCCCGAGAATTTGAAACCCTTCTTTCACAGAGCCACTGAAGCTCAGGAGCGATTGGCTAAGCTTGAAGCTGCTCTTGCGTCGACCAAGACAGACATTCCGGATGCTAAACTTGTGGAGGAAAACAAACAACTTCAGTCAAAGCTCGAAGAAGCTAACGCCACTGTGAAGCAAGAACAGACTAAGGTGAAGGACTTGACCATTGAAAACGCCAAGCATAAGTACCGTATATTGCATCTTGTGCGGGCTCTAAAGGATGCTGATCAGAAGCTTGAGAGGCTCTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.8

Weight (kDa)

8.0

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 101
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 262
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 78, 137
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 34, 86, 224
AluBI AGCT 6 cut(s) 62, 82, 89, 163, 173, 289
AluI AGCT 6 cut(s) 62, 82, 89, 163, 173, 289
AlwI GGATC 1 cut(s) 15
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 23
BanII GRGCYC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 76
BclI TGATCA 1 cut(s) 280
BisI GCNGC 1 cut(s) 90
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 23
BmsI GCATC 3 cut(s) 112, 262, 265
BplI GAGNNNNNCTC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 63
Bpu1102I GCTNAGC 1 cut(s) 78
BsaBI GATNNNNATC 2 cut(s) 12, 279
BsaWI WCCGGW 1 cut(s) 118
Bse8I GATNNNNATC 2 cut(s) 12, 279
BseAI TCCGGA 1 cut(s) 118
BseGI GGATG 2 cut(s) 127, 280
BseJI GATNNNNATC 2 cut(s) 12, 279
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 268
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 7, 280
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 76
BspEI TCCGGA 1 cut(s) 118
BspPI GGATC 1 cut(s) 15
BssMI GATC 2 cut(s) 7, 280
Bst4CI ACNGT 2 cut(s) 184, 245
BstAPI GCANNNNNTGC 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 3 cut(s) 63, 78, 201
BstF5I GGATG 2 cut(s) 127, 280
BstKTI GATC 2 cut(s) 10, 283
BstMBI GATC 2 cut(s) 7, 280
BstMWI GCNNNNNNNGC 4 cut(s) 59, 95, 259, 295
BstV1I GCAGC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 127, 280
BtsIMutI CAGTG 2 cut(s) 54, 180
Cac8I GCNNGC 1 cut(s) 264
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 241
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 63, 78, 201
DpnI GATC 2 cut(s) 9, 282
DpnII GATC 2 cut(s) 7, 280
Eco24I GRGCYC 1 cut(s) 268
Eco57I CTGAAG 2 cut(s) 78, 137
Eco88I CYCGRG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 268
FaiI YATR 2 cut(s) 237, 248
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FauI CCCGC 1 cut(s) 255
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 134, 287
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 2 cut(s) 80, 287
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 3 cut(s) 23, 65, 119
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 49, 202
HpyCH4III ACNGT 2 cut(s) 184, 245
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 95, 259, 295
HpyF3I CTNAG 3 cut(s) 63, 78, 201
Kpn2I TCCGGA 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 7, 280
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 2 cut(s) 50, 132
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 3 cut(s) 112, 262, 265
MalI GATC 2 cut(s) 9, 282
MboI GATC 2 cut(s) 7, 280
MboII GAAGA 2 cut(s) 11, 179
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 1 cut(s) 28
MnlI CCTC 2 cut(s) 130, 288
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 38
MspI CCGG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 59, 95, 259, 295
NdeII GATC 2 cut(s) 7, 280
PdmI GAANNNNTTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 91
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 100
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 7, 280
SduI GDGCHC 1 cut(s) 268
SetI ASST 7 cut(s) 64, 84, 91, 165, 175, 207, 291
SfaNI GCATC 3 cut(s) 112, 262, 265
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 28
SsiI CCGC 1 cut(s) 262
TaaI ACNGT 2 cut(s) 184, 245
TaqI TCGA 2 cut(s) 101, 165
TasI AATT 1 cut(s) 28
TscAI CASTG 2 cut(s) 61, 187
TseI GCWGC 1 cut(s) 89
TspRI CASTG 2 cut(s) 61, 187
XapI RAATTY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.