Rh3DG285700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003441
Physical Location & Seq
Reverse (-)
29176362 .. 29176691
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG285700.1

Sequence Viewer

Length: 330 bp
ATGTCGATGCCCGACGACAACACGGAGAGCATCTTCACCAAATGTTTACTCCAAGAAAAGGACTCCTATTGTGACCCCCAAATAAACAGACTCTGCTACAACATTAATTTTATTAGTGAAAATGCTCTATATGATGTACCCGTTGTTCCTCTCTTCACAGGCCATTTCAACGATTCCAATTTTCTGATGTTTGCAATCAAAAGCTCACATGCAGTGAGTACACTGCACTCTTGGCGGCCATATCAACTTAAATTTACCAAAGAAGGAGAGAGGTATAGAGCACATGGATCCTTCCAATTCGCCCACATGGCCACATCTGAGAGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.62

Weight (kDa)

5.89

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 328
AciI CCGC 1 cut(s) 235
AclWI GGATC 2 cut(s) 282, 295
AcoI YGGCCR 2 cut(s) 236, 309
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 2 cut(s) 138, 220
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 2 cut(s) 282, 295
AlwNI CAGNNNCTG 1 cut(s) 93
AoxI GGCC 3 cut(s) 160, 236, 309
ApoI RAATTY 1 cut(s) 251
AseI ATTAAT 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 28
BalI TGGCCA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 283
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 289
BmsI GCATC 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 209
BshFI GGCC 3 cut(s) 162, 238, 311
BsiHKAI GWGCWC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 58
BsnI GGCC 3 cut(s) 162, 238, 311
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 287
BspACI CCGC 1 cut(s) 235
BspANI GGCC 3 cut(s) 162, 238, 311
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 2 cut(s) 282, 295
BssMI GATC 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 318
BstKTI GATC 1 cut(s) 290
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 232, 308
BstNSI RCATGY 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BsuRI GGCC 3 cut(s) 162, 238, 311
BtsI GCAGTG 2 cut(s) 219, 221
BtsIMutI CAGTG 2 cut(s) 219, 221
CaiI CAGNNNCTG 1 cut(s) 93
Csp6I GTAC 2 cut(s) 137, 219
CviAII CATG 3 cut(s) 209, 284, 307
CviJI RGCY 4 cut(s) 162, 204, 238, 311
CviKI_1 RGCY 4 cut(s) 162, 204, 238, 311
CviQI GTAC 2 cut(s) 137, 219
DdeI CTNAG 1 cut(s) 318
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 236, 309
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
FaeI CATG 3 cut(s) 212, 287, 310
FaiI YATR 8 cut(s) 130, 132, 210, 241, 276, 285, 308, 328
FatI CATG 3 cut(s) 208, 283, 306
Fnu4HI GCNGC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 3 cut(s) 162, 238, 311
Hin1II CATG 3 cut(s) 212, 287, 310
HinfI GANTC 3 cut(s) 62, 90, 173
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 47, 221
Hpy188I TCNGA 2 cut(s) 186, 319
Hpy8I GTNNAC 2 cut(s) 47, 221
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 257, 301
HpyCH4V TGCA 3 cut(s) 194, 212, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 308
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 3 cut(s) 212, 287, 310
Kzo9I GATC 1 cut(s) 287
LpnPI CCDG 1 cut(s) 144
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 2 cut(s) 25, 145
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 4 cut(s) 106, 178, 251, 296
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 2 cut(s) 56, 84
MnlI CCTC 2 cut(s) 159, 264
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
MseI TTAA 2 cut(s) 105, 249
Msp20I TGGCCA 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 232, 308
NdeII GATC 1 cut(s) 287
NlaIII CATG 3 cut(s) 212, 287, 310
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 1 cut(s) 212
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 2 cut(s) 56, 84
PpsI GAGTC 2 cut(s) 56, 84
PshBI ATTAAT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 289
PsrI GAACNNNNNNTAC 2 cut(s) 129, 161
PstNI CAGNNNCTG 1 cut(s) 93
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 2 cut(s) 138, 220
RsaNI GTAC 2 cut(s) 137, 219
SaqAI TTAA 2 cut(s) 105, 249
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 1 cut(s) 287
SchI GAGTC 2 cut(s) 56, 84
SduI GDGCHC 1 cut(s) 283
SetI ASST 2 cut(s) 206, 275
SfaNI GCATC 1 cut(s) 39
SgeI CNNG 9 cut(s) 23, 34, 65, 152, 171, 221, 243, 296, 319
Sse9I AATT 4 cut(s) 106, 178, 251, 296
SsiI CCGC 1 cut(s) 235
TaqI TCGA 1 cut(s) 5
TasI AATT 4 cut(s) 106, 178, 251, 296
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 105, 249
Tru9I TTAA 2 cut(s) 105, 249
TscAI CASTG 2 cut(s) 219, 228
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 2 cut(s) 219, 228
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.