Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Forward (+)

20083931 .. 20087523

Gene Structure 3593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGCAACCTGAGAATCCTGTCGTCCTGGACCAGACGTTGAAGCCCTTTTACCAGAGGGCCTCCGAAGCCGAGAACAAGAAGCTCGCTGCAGAGAATGCAAAGCTCCAGTACCGCATAAACCACCTTGTTCAGGCAGTCAGAGATGCTGATGTCAAGTTAGAGAAAAAGCTGCGAAAGCCGAAACCAACATGCCTTCCAAGTTCTTGTCCGAAGAATGAAGCTGCAGCAATTAGCAACACAGGTTTAGGTGGCATGGATCCAGAGATATTCGCAGCAGCAGCCGAAGGAAATATTAAAGCCCTTTCAACACATGGGGAGCTTCTGCATGAAATACTCACTCCAACCAAAAACACTGTCCTACATATTTATGTAGCACATGCAAGCTACCCAACCTCGACAAAACTCGAAAAGTTTGACATCTCCAGATATGGCCTCCCTGGTCTACTTGCTGATTTGCTCATTAAAAAGCTAATGCCATACATATGGGACACAGAAAACACAGTTAGGCCAACTACCTTAACTGCATCCCAAGTACAGAGGTCAAAGGAGATTGTCACTCAGTTGCTTGAAGTGTGTCCAGAGCTACTTTTACAGCCCAACAATAATGGCGACATTGCACTACACATTGCGTCCAGATATGGGCTTGATGGTATAGTTGAAGTTCTTATTGGGGCAGCAAAAGCTCGTCATGGCGATGTTGAGAAACAGGTTGAAGAAGCTTGGCAAATGTTGAGGACACCCAACAAGGAGGAAGACAGCCCTACACGAGGCAGCGCGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

261

Amino Acids

28.77

Weight (kDa)

6.67

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	445
AccII	CGCG	1 cut(s)	779
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	2 cut(s)	254, 267
AfaI	GTAC	2 cut(s)	113, 537
AfiI	CCNNNNNNNGG	3 cut(s)	133, 642, 770
AgsI	TTSAA	5 cut(s)	43, 309, 572, 662, 716
AjnI	CCWGG	2 cut(s)	27, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AlwI	GGATC	2 cut(s)	254, 267
AoxI	GGCC	3 cut(s)	60, 433, 509
ApeKI	GCWGC	9 cut(s)	89, 172, 224, 227, 275, 278, 281, 677, 774
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AspLEI	GCGC	3 cut(s)	7, 779, 781
AspS9I	GGNCC	2 cut(s)	31, 60
AvaII	GGWCC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	259
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BauI	CACGAG	1 cut(s)	768
BbsI	GAAGAC	1 cut(s)	762
BbvI	GCAGC	8 cut(s)	76, 159, 211, 239, 287, 290, 293, 689
BccI	CCATC	1 cut(s)	644
BciT130I	CCWGG	2 cut(s)	29, 441
BfmI	CTRYAG	2 cut(s)	90, 225
BisI	GCNGC	9 cut(s)	90, 173, 225, 228, 276, 279, 282, 678, 775
BlsI	GCNGC	9 cut(s)	91, 174, 226, 229, 277, 280, 283, 679, 776
Bme1390I	CCNGG	2 cut(s)	29, 441
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	31, 60
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	29, 441
BmsI	GCATC	2 cut(s)	136, 536
BpiI	GAAGAC	1 cut(s)	762
BpmI	CTGGAG	2 cut(s)	92, 409
BsaJI	CCNNGG	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 642, 770
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	2 cut(s)	615, 627
BseBI	CCWGG	2 cut(s)	29, 441
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	3 cut(s)	133, 642, 770
BseMI	GCAATG	2 cut(s)	615, 627
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	109
BsePI	GCGCGC	1 cut(s)	777
BseXI	GCAGC	8 cut(s)	76, 159, 211, 239, 287, 290, 293, 689
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	3 cut(s)	62, 435, 511
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	133, 642, 770
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	62, 435, 511
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	3 cut(s)	62, 435, 511
BspCNI	CTCAG	2 cut(s)	4, 574
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	2 cut(s)	94, 229
BspPI	GGATC	2 cut(s)	254, 267
BsrDI	GCAATG	2 cut(s)	615, 627
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	439
BssHII	GCGCGC	1 cut(s)	777
BssMI	GATC	1 cut(s)	259
BssSI	CACGAG	1 cut(s)	768
Bst2BI	CACGAG	1 cut(s)	768
Bst2UI	CCWGG	2 cut(s)	29, 441
Bst4CI	ACNGT	2 cut(s)	358, 505
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	87, 385, 779
BstDEI	CTNAG	2 cut(s)	12, 561
BstENI	CCTNNNNNAGG	2 cut(s)	131, 768
BstF5I	GGATG	1 cut(s)	527
BstFNI	CGCG	1 cut(s)	779
BstHHI	GCGC	3 cut(s)	7, 779, 781
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 98, 178, 281, 683
BstNI	CCWGG	2 cut(s)	29, 441
BstNSI	RCATGY	2 cut(s)	195, 383
BstSCI	CCNGG	2 cut(s)	27, 439
BstSFI	CTRYAG	2 cut(s)	90, 225
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	8 cut(s)	76, 159, 211, 239, 287, 290, 293, 689
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	62, 435, 511
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	3 cut(s)	87, 385, 779
CfoI	GCGC	3 cut(s)	7, 779, 781
Cfr13I	GGNCC	2 cut(s)	31, 60
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	112, 536
CviAII	CATG	6 cut(s)	192, 256, 314, 329, 380, 692
CviQI	GTAC	2 cut(s)	112, 536
DdeI	CTNAG	2 cut(s)	12, 561
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	31
EcoNI	CCTNNNNNAGG	2 cut(s)	131, 768
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	27, 439
FaeI	CATG	6 cut(s)	195, 259, 317, 332, 383, 695
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	6 cut(s)	191, 255, 313, 328, 379, 691
FauNDI	CATATG	1 cut(s)	485
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	9 cut(s)	90, 173, 225, 228, 276, 279, 282, 678, 775
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	9 cut(s)	90, 173, 225, 228, 276, 279, 282, 678, 775
GlaI	GCGC	3 cut(s)	6, 778, 780
GluI	GCNGC	9 cut(s)	90, 173, 225, 228, 276, 279, 282, 678, 775
GsuI	CTGGAG	2 cut(s)	92, 409
HaeIII	GGCC	3 cut(s)	62, 435, 511
HgaI	GACGC	1 cut(s)	621
HhaI	GCGC	3 cut(s)	7, 779, 781
Hin1II	CATG	6 cut(s)	195, 259, 317, 332, 383, 695
Hin6I	GCGC	3 cut(s)	5, 777, 779
HinP1I	GCGC	3 cut(s)	5, 777, 779
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	3 cut(s)	67, 143, 213
Hpy188III	TCNNGA	4 cut(s)	263, 426, 581, 636
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	206, 281
HpyCH4III	ACNGT	2 cut(s)	358, 505
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	7 cut(s)	92, 101, 227, 328, 383, 527, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 98, 178, 281, 683
HpyF3I	CTNAG	2 cut(s)	12, 561
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	6 cut(s)	195, 259, 317, 332, 383, 695
HspAI	GCGC	3 cut(s)	5, 777, 779
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	111, 319
Lsp1109I	GCAGC	8 cut(s)	76, 159, 211, 239, 287, 290, 293, 689
LweI	GCATC	2 cut(s)	136, 536
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	226, 728, 767
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	8 cut(s)	51, 73, 406, 446, 534, 729, 745, 764
MseI	TTAA	4 cut(s)	297, 465, 521, 784
MslI	CAYNNNNRTG	3 cut(s)	369, 484, 696
MspR9I	CCNGG	2 cut(s)	29, 441
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	2 cut(s)	29, 441
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	5 cut(s)	68, 98, 178, 281, 683
NdeI	CATATG	1 cut(s)	485
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	195, 259, 317, 332, 383, 695
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	2 cut(s)	195, 383
PauI	GCGCGC	1 cut(s)	777
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	9 cut(s)	91, 174, 226, 229, 277, 280, 283, 679, 776
Psp6I	CCWGG	2 cut(s)	27, 439
PspGI	CCWGG	2 cut(s)	27, 439
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	31, 60
PstI	CTGCAG	2 cut(s)	94, 229
PsuI	RGATCY	1 cut(s)	259
PteI	GCGCGC	1 cut(s)	777
RsaI	GTAC	2 cut(s)	113, 537
RsaNI	GTAC	2 cut(s)	112, 536
RseI	CAYNNNNRTG	3 cut(s)	369, 484, 696
SaqAI	TTAA	4 cut(s)	297, 465, 521, 784
SatI	GCNGC	9 cut(s)	90, 173, 225, 228, 276, 279, 282, 678, 775
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	2 cut(s)	31, 60
ScrFI	CCNGG	2 cut(s)	29, 441
SfaNI	GCATC	2 cut(s)	136, 536
SfcI	CTRYAG	2 cut(s)	90, 225
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	3 cut(s)	369, 484, 696
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	115
SspI	AATATT	1 cut(s)	295
StyD4I	CCNGG	2 cut(s)	27, 439
TaaI	ACNGT	2 cut(s)	358, 505
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	398, 408
TasI	AATT	1 cut(s)	231
TatI	WGTACW	1 cut(s)	535
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	4 cut(s)	297, 465, 521, 784
Tru9I	TTAA	4 cut(s)	297, 465, 521, 784
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	9 cut(s)	89, 172, 224, 227, 275, 278, 281, 677, 774
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	2 cut(s)	234, 345
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	31
XagI	CCTNNNNNAGG	2 cut(s)	131, 768
XceI	RCATGY	2 cut(s)	195, 383
XmiI	GTMKAC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.