Rorug03G0206900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003441
Physical Location & Seq
Reverse (-)
18333985 .. 18334839
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0206900.1

Sequence Viewer

Length: 705 bp
ATGGAATGGGCCTTCTTACGTAAAGTGTTGGGAAGATTTGGCTTTGCTCAAGCTTGGATTGATATAGTAATGCAATGTGTGTGCTCTATGAGGTATTCCTTTTTAGTCAGAGGTAAACCTAGAGGATATGTTATTCCTTCTCGCGGGTTGAGACAAGGGGATCCACTATCGCCGTACTTATTTTTACTTGGGGCTAAAGGTTTCTCGGCTTTGCTTCAACAAAAACAGCGTCTGGGCTTATTGCCTGGAATTGCTATATGTCAGGGAGCTCCTAAGAATGTAGGAGGTTCTGTCCAAGATTCAGTGGCCAGTTTGTTGGGAGTTGAAATAGTGGGGTCACAAGAGCGTTATTTGGGATTGCCAACCTATGTGGGCAGAAAGAAAACGGCTACTTTTGAGTATATCAAAGAGAGGCTGGCAGAAAAGATGAAGCATTGGCAAGGTAAATTACTAAGCGGTGCTGGTAAGGATATTTTGATCCGGGTGGTCGCCCAAGCTCTCCCAAATTATGCTATGAGTGTCTTTCAGCTTTCGAAAAGCTTTTGTGAGGATCTTGAGCAGATGTGTGCCAGGTTTTGGTGGGGCAGTACAACTGATAAACGAAAAATCCATTGGAAAAAGTGGGATGATCTTTGTCACCCTAAAGAGATGGGGGGGGGGGGCTGGGGTTTAGAAGCCTTTCGGAGTTTAATTTATCCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.33

Weight (kDa)

9.66

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 576
AccII CGCG 1 cut(s) 144
AciI CCGC 2 cut(s) 144, 456
AclWI GGATC 4 cut(s) 155, 168, 472, 558
AcoI YGGCCR 1 cut(s) 306
AfaI GTAC 2 cut(s) 176, 589
AfiI CCNNNNNNNGG 2 cut(s) 143, 576
AgsI TTSAA 2 cut(s) 218, 326
AjnI CCWGG 2 cut(s) 244, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 595, 627
AluBI AGCT 5 cut(s) 53, 269, 497, 529, 540
AluI AGCT 5 cut(s) 53, 269, 497, 529, 540
Alw21I GWGCWC 2 cut(s) 86, 271
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 4 cut(s) 155, 168, 472, 558
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 2 cut(s) 9, 306
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
Asp700I GAANNNNTTC 1 cut(s) 678
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 629
AsuII TTCGAA 1 cut(s) 533
BalI TGGCCA 1 cut(s) 308
BamHI GGATCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 271
Bbv12I GWGCWC 2 cut(s) 86, 271
BccI CCATC 1 cut(s) 643
BceAI ACGGC 2 cut(s) 157, 402
BciT130I CCWGG 2 cut(s) 246, 571
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 2 cut(s) 120, 703
Bme1390I CCNGG 3 cut(s) 246, 482, 571
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 3 cut(s) 246, 482, 571
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 33, 575
BpuMI CCSGG 1 cut(s) 482
BsaAI YACGTR 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 576
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 2 cut(s) 246, 571
BseGI GGATG 1 cut(s) 631
BseLI CCNNNNNNNGG 2 cut(s) 143, 576
BseMI GCAATG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 11, 308
BsiHKAI GWGCWC 2 cut(s) 86, 271
BsiSI CCGG 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 143, 576
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 2 cut(s) 11, 308
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 86, 271
Bsp143I GATC 4 cut(s) 160, 477, 550, 628
BspACI CCGC 2 cut(s) 144, 456
BspANI GGCC 2 cut(s) 11, 308
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 4 cut(s) 155, 168, 472, 558
BspT104I TTCGAA 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 1 cut(s) 309
BssMI GATC 4 cut(s) 160, 477, 550, 628
Bst2UI CCWGG 2 cut(s) 246, 571
BstBAI YACGTR 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 273, 452
BstF5I GGATG 1 cut(s) 631
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 4 cut(s) 163, 480, 553, 631
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 4 cut(s) 160, 477, 550, 628
BstNI CCWGG 2 cut(s) 246, 571
BstSCI CCNGG 3 cut(s) 244, 480, 569
BstSNI TACGTA 1 cut(s) 20
BstUI CGCG 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 160, 550
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 2 cut(s) 160, 550
BsuRI GGCC 2 cut(s) 11, 308
BtsCI GGATG 1 cut(s) 631
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 9
CseI GACGC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 175, 588
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 1 cut(s) 699
CviQI GTAC 2 cut(s) 175, 588
DdeI CTNAG 2 cut(s) 273, 452
DpnI GATC 4 cut(s) 162, 479, 552, 630
DpnII GATC 4 cut(s) 160, 477, 550, 628
EaeI YGGCCR 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 269
Eco105I TACGTA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 244, 569
EcoT38I GRGCYC 1 cut(s) 271
FaeI CATG 1 cut(s) 702
FatI CATG 1 cut(s) 698
FauI CCCGC 1 cut(s) 137
FokI GGATG 1 cut(s) 638
FriOI GRGCYC 1 cut(s) 271
FspBI CTAG 2 cut(s) 120, 703
GsaI CCCAGC 1 cut(s) 667
HaeIII GGCC 2 cut(s) 11, 308
HapII CCGG 1 cut(s) 481
HgaI GACGC 1 cut(s) 218
Hin1II CATG 1 cut(s) 702
HindIII AAGCTT 2 cut(s) 51, 538
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 481
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 110, 684
Hpy188III TCNNGA 1 cut(s) 554
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 22, 147
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 273, 452
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 1 cut(s) 702
Kzo9I GATC 4 cut(s) 160, 477, 550, 628
LmnI GCTCC 2 cut(s) 266, 274
MaeI CTAG 2 cut(s) 120, 703
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 336, 635
MalI GATC 4 cut(s) 162, 479, 552, 630
MboI GATC 4 cut(s) 160, 477, 550, 628
MboII GAAGA 1 cut(s) 45
MflI RGATCY 2 cut(s) 160, 550
MhlI GDGCHC 2 cut(s) 86, 271
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 4 cut(s) 249, 446, 505, 690
MluNI TGGCCA 1 cut(s) 308
MnlI CCTC 6 cut(s) 84, 104, 116, 278, 405, 541
Mox20I TGGCCA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 678
MscI TGGCCA 1 cut(s) 308
MseI TTAA 1 cut(s) 689
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 3 cut(s) 246, 482, 571
MvaI CCWGG 2 cut(s) 246, 571
MvnI CGCG 1 cut(s) 144
NciI CCSGG 1 cut(s) 482
NdeII GATC 4 cut(s) 160, 477, 550, 628
NlaIII CATG 1 cut(s) 702
NlaIV GGNNCC 1 cut(s) 162
NmeAIII GCCGAG 1 cut(s) 185
NmuCI GTSAC 2 cut(s) 336, 635
NspV TTCGAA 1 cut(s) 533
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 244, 569
PspFI CCCAGC 1 cut(s) 663
PspGI CCWGG 2 cut(s) 244, 569
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 232
PsuI RGATCY 2 cut(s) 160, 550
RsaI GTAC 2 cut(s) 176, 589
RsaNI GTAC 2 cut(s) 175, 588
SacI GAGCTC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 689
Sau3AI GATC 4 cut(s) 160, 477, 550, 628
Sau96I GGNCC 1 cut(s) 9
ScrFI CCNGG 3 cut(s) 246, 482, 571
SduI GDGCHC 2 cut(s) 86, 271
SfuI TTCGAA 1 cut(s) 533
SmlI CTYRAG 2 cut(s) 48, 554
SmoI CTYRAG 2 cut(s) 48, 554
SnaBI TACGTA 1 cut(s) 20
Sse9I AATT 4 cut(s) 249, 446, 505, 690
SsiI CCGC 2 cut(s) 144, 456
SspMI CTAG 2 cut(s) 120, 703
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 3 cut(s) 244, 480, 569
TaiI ACGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 533
TasI AATT 4 cut(s) 249, 446, 505, 690
TatI WGTACW 1 cut(s) 587
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 2 cut(s) 336, 635
Tsp45I GTSAC 2 cut(s) 336, 635
TspDTI ATGAA 1 cut(s) 443
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 576
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 2 cut(s) 120, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.