Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Reverse (-)

29303894 .. 29312294

Gene Structure 8401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATGACTTAGCGATCCTTGTTACACCTCCACTTGGTTACCAAGGCCCTAGTGGTAAAACAGCTTTACATGCTGCAGTGATCTTCAGTGATATAGAAATGACGCAAAAATTGCTAGACAAGGAGAAGACCCTGGCACAAGCAAGAGATGAACAAGGATGGACTCCACTTCACTTTGCTGCACTCATCGGTAACAGATGGATTGTGAGCCGGCTACTAGATTGTGATAAATCAATTGCCTATATCGTTGACAAAGATGACAAGAAGACAACTCTTCACATTGCAGCTTCCAAAGGCCATGAAGGCGTACTGACAGAGCTTATATATCGTTGCCCTGATTGTTGTGAAGTAGTCGACCGACGCCAGCGAAATATCCTTCATTATGCCATTGAGAACAGGAAGTTTGAAATAGCTAAGGTTGTTCAAAACCATCCATGGATGAGCAACATCCTTCTAAATGGTAAAGATGTTGTCGGAAACACACCCCTCCATCGACTAGTCAACATACGCCTCCAAATAGCTACTGAATCTTTATTTCGCTATGGAAAAGCTCCTACCCGGTTGAGTCGGTTCATTCATGATGCTAGAGTGGATAAGAGGGCTTTGAACAAGGAAGACCTAAATGCTATTGACATCATTCTTGATGATGACCATACTTTATCAGAAGTGGAGAAAGTTGGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

228

Amino Acids

25.87

Weight (kDa)

7.12

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	17 - 76	4.5e-10	Ankyrin repeats (3 copies)
Ank_4	PF13637	23 - 71	7.3e-08	Ankyrin repeats (many copies)
Ank_2	PF12796	84 - 140	2.5e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	92 - 166	5.5e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AclWI	GGATC	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	407, 425, 607
AhlI	ACTAGT	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	6 cut(s)	65, 287, 319, 413, 521, 551
AluI	AGCT	6 cut(s)	65, 287, 319, 413, 521, 551
AlwI	GGATC	1 cut(s)	10
AoxI	GGCC	2 cut(s)	46, 295
ApeKI	GCWGC	3 cut(s)	74, 179, 284
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	559
BbsI	GAAGAC	3 cut(s)	134, 272, 621
BbvI	GCAGC	3 cut(s)	61, 166, 296
BccI	CCATC	4 cut(s)	153, 192, 438, 498
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	559
BcuI	ACTAGT	1 cut(s)	496
BfaI	CTAG	5 cut(s)	51, 116, 218, 497, 585
BfmI	CTRYAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	75, 180, 285
BlsI	GCNGC	3 cut(s)	76, 181, 286
Bme1390I	CCNGG	2 cut(s)	134, 559
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	134, 559
BmsI	GCATC	1 cut(s)	571
BpiI	GAAGAC	3 cut(s)	134, 272, 621
Bpu10I	CCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	43, 132, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	43, 132, 434
BseGI	GGATG	5 cut(s)	10, 164, 430, 444, 447
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	61, 166, 296
BsgI	GTGCAG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	48, 297
BsiEI	CGRYCG	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	211, 559
BslI	CCNNNNNNNGG	1 cut(s)	35
BsnI	GGCC	2 cut(s)	48, 297
Bsp143I	GATC	2 cut(s)	15, 81
Bsp19I	CCATGG	1 cut(s)	434
BspANI	GGCC	2 cut(s)	48, 297
BspHI	TCATGA	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	3 cut(s)	43, 132, 434
BssMI	GATC	2 cut(s)	15, 81
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	43, 434
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	361
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	212, 365
BstDEI	CTNAG	2 cut(s)	10, 414
BstDSI	CCRYGG	1 cut(s)	434
BstEII	GGTNACC	1 cut(s)	38
BstF5I	GGATG	5 cut(s)	10, 164, 430, 444, 447
BstKTI	GATC	2 cut(s)	18, 84
BstMBI	GATC	2 cut(s)	15, 81
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 112, 303
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	74
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	132, 557
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	61, 166, 296
BstV2I	GAAGAC	3 cut(s)	134, 272, 621
BsuRI	GGCC	2 cut(s)	48, 297
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	5 cut(s)	10, 164, 430, 444, 447
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 94
Cac8I	GCNNGC	2 cut(s)	212, 365
CciI	TCATGA	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	2 cut(s)	112, 369
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	4 cut(s)	71, 299, 435, 578
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	10, 414
DpnI	GATC	2 cut(s)	17, 83
DpnII	GATC	2 cut(s)	15, 81
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	43, 434
Eco57I	CTGAAG	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	43, 434
ErhI	CCWWGG	2 cut(s)	43, 434
FaeI	CATG	4 cut(s)	74, 302, 438, 581
FatI	CATG	4 cut(s)	70, 298, 434, 577
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	75, 180, 285
FokI	GGATG	5 cut(s)	17, 171, 417, 434, 451
Fsp4HI	GCNGC	3 cut(s)	75, 180, 285
FspBI	CTAG	5 cut(s)	51, 116, 218, 497, 585
GluI	GCNGC	3 cut(s)	75, 180, 285
HaeIII	GGCC	2 cut(s)	48, 297
HapII	CCGG	2 cut(s)	211, 559
HgaI	GACGC	2 cut(s)	112, 369
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	4 cut(s)	74, 302, 438, 581
HincII	GTYRAC	3 cut(s)	250, 355, 502
HindII	GTYRAC	3 cut(s)	250, 355, 502
HinfI	GANTC	3 cut(s)	163, 527, 565
HpaII	CCGG	2 cut(s)	211, 559
Hpy166II	GTNNAC	3 cut(s)	250, 355, 502
Hpy188I	TCNGA	2 cut(s)	476, 664
Hpy188III	TCNNGA	2 cut(s)	578, 641
Hpy8I	GTNNAC	3 cut(s)	250, 355, 502
Hpy99I	CGWCG	1 cut(s)	363
HpyAV	CCTTC	3 cut(s)	296, 386, 461
HpyCH4V	TGCA	3 cut(s)	77, 182, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 112, 303
HpyF3I	CTNAG	2 cut(s)	10, 414
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	74, 302, 438, 581
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	15, 81
LmnI	GCTCC	1 cut(s)	556
LpnPI	CCDG	7 cut(s)	119, 146, 224, 348, 377, 382, 572
Lsp1109I	GCAGC	3 cut(s)	61, 166, 296
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	5 cut(s)	51, 116, 218, 497, 585
MaeIII	GTNAC	3 cut(s)	22, 38, 191
MalI	GATC	2 cut(s)	17, 83
MboI	GATC	2 cut(s)	15, 81
MboII	GAAGA	5 cut(s)	76, 139, 266, 277, 626
MfeI	CAATTG	1 cut(s)	234
MluCI	AATT	2 cut(s)	110, 234
MlyI	GAGTC	2 cut(s)	157, 574
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	4 cut(s)	39, 497, 521, 591
MroNI	GCCGGC	1 cut(s)	210
MseI	TTAA	1 cut(s)	685
MspI	CCGG	2 cut(s)	211, 559
MspR9I	CCNGG	2 cut(s)	134, 559
MunI	CAATTG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	71, 112, 303
NaeI	GCCGGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	2 cut(s)	15, 81
NgoMIV	GCCGGC	1 cut(s)	210
NlaIII	CATG	4 cut(s)	74, 302, 438, 581
NspI	RCATGY	1 cut(s)	74
PagI	TCATGA	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	76, 181, 286
PleI	GAGTC	2 cut(s)	157, 573
PpsI	GAGTC	2 cut(s)	157, 573
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	685
SatI	GCNGC	3 cut(s)	75, 180, 285
Sau3AI	GATC	2 cut(s)	15, 81
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	157, 574
ScrFI	CCNGG	2 cut(s)	134, 559
SetI	ASST	9 cut(s)	31, 67, 289, 321, 415, 420, 523, 553, 621
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	75
SpeI	ACTAGT	1 cut(s)	496
Sse9I	AATT	2 cut(s)	110, 234
SspMI	CTAG	5 cut(s)	51, 116, 218, 497, 585
StyD4I	CCNGG	2 cut(s)	132, 557
StyI	CCWWGG	2 cut(s)	43, 434
TaqI	TCGA	2 cut(s)	354, 493
TaqII	GACCGA	1 cut(s)	372
TasI	AATT	2 cut(s)	110, 234
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	1 cut(s)	685
Tru9I	TTAA	1 cut(s)	685
TscAI	CASTG	2 cut(s)	84, 94
TseI	GCWGC	3 cut(s)	74, 179, 284
TspDTI	ATGAA	5 cut(s)	165, 315, 368, 562, 566
TspRI	CASTG	2 cut(s)	84, 94
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	5 cut(s)	51, 116, 218, 497, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.