FvH4_6g24490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003441
Physical Location & Seq
Reverse (-)
18582083 .. 18584710
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24490.t4

Sequence Viewer

Length: 267 bp
ATGGCGGAGCCTGAGAATCCTGGAGTCCTTGACCACACGTTGAAGCCCTTTTACCAGAGAGCCTCCGAAGCCGAGGATCGCTTAACAAGACTTGAAGCTGCTCTTGCTAGCAAGCAAGATTCTGGAAATAAAGATCATTCAAAGTTGAACAGTGAACTTCAAGAAAAGATCAAGAAGCTCGCTGCAGAGAATGCAAAGCTCCAATACCGCATCCACCATCTTGTTCAGGCAGTTAGAGATGCTGATCTCAAGTTAGAGAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.02

Weight (kDa)

8.0

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 208
AclWI GGATC 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 5 cut(s) 43, 95, 141, 148, 161
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 3 cut(s) 98, 178, 199
AluI AGCT 3 cut(s) 98, 178, 199
AlwI GGATC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 98, 182
AsuNHI GCTAGC 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbvI GCAGC 2 cut(s) 85, 169
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 21
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 99, 183
BlsI GCNGC 2 cut(s) 100, 184
Bme1390I CCNGG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 219, 229
BmtI GCTAGC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 243
BseXI GCAGC 2 cut(s) 85, 169
BsmI GAATGC 1 cut(s) 196
Bsp143I GATC 4 cut(s) 76, 133, 168, 244
BspACI CCGC 2 cut(s) 5, 208
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 4 cut(s) 76, 133, 168, 244
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 109, 113, 180
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 4 cut(s) 79, 136, 171, 247
BstMBI GATC 4 cut(s) 76, 133, 168, 244
BstMWI GCNNNNNNNGC 3 cut(s) 68, 104, 191
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 85, 169
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 3 cut(s) 109, 113, 180
CviJI RGCY 7 cut(s) 10, 46, 62, 71, 98, 178, 199
CviKI_1 RGCY 7 cut(s) 10, 46, 62, 71, 98, 178, 199
DdeI CTNAG 1 cut(s) 12
DpnI GATC 4 cut(s) 78, 135, 170, 246
DpnII GATC 4 cut(s) 76, 133, 168, 244
EciI GGCGGA 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 19
FalI AAGNNNNNCTT 2 cut(s) 87, 119
Fnu4HI GCNGC 2 cut(s) 99, 183
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 99, 183
FspBI CTAG 1 cut(s) 108
GluI GCNGC 2 cut(s) 99, 183
GsuI CTGGAG 1 cut(s) 42
HinfI GANTC 3 cut(s) 16, 24, 119
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 3 cut(s) 123, 161, 172
Hpy8I GTNNAC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 185, 194
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 104, 191
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 38
Kzo9I GATC 4 cut(s) 76, 133, 168, 244
LmnI GCTCC 2 cut(s) 7, 204
LpnPI CCDG 6 cut(s) 6, 24, 33, 68, 108, 212
Lsp1109I GCAGC 2 cut(s) 85, 169
LweI GCATC 2 cut(s) 219, 229
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 38
MalI GATC 4 cut(s) 78, 135, 170, 246
MboI GATC 4 cut(s) 76, 133, 168, 244
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 2 cut(s) 67, 73
MseI TTAA 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 68, 104, 191
NdeII GATC 4 cut(s) 76, 133, 168, 244
NheI GCTAGC 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 97
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 16, 119
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 2 cut(s) 100, 184
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 187
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 99, 183
Sau3AI GATC 4 cut(s) 76, 133, 168, 244
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 21
SetI ASST 4 cut(s) 41, 100, 180, 201
SfaNI GCATC 2 cut(s) 219, 229
SfcI CTRYAG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SsiI CCGC 2 cut(s) 5, 208
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 41
TfiI GAWTC 2 cut(s) 16, 119
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 157
TseI GCWGC 2 cut(s) 98, 182
TspRI CASTG 1 cut(s) 157
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.