Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Reverse (-)

29312756 .. 29313154

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG292300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATGCTGCGAAGGCCGAAACCAAGGTGCCTTCCAAGTTCTGGTTCGAAGAATGAAGCTGCAGCAATTAGCAACACAGGTTTAGGTGGCATGGATCCAGAGATATTCGCAGCAGCAGCCGAAGGAAATATTAAAGCCCTTTCAACACATGGGGAGCTTCTGCATGAAATACTCGCTCCAACTAAAAACACTGTCCTACATATTTATGTAGCACATGCAAGCTACCCAACCTTAACAAAACTCGAAAAGTTTGACAGCTCCAGATATGGCCTCCCTGGTCTACTTGCTGATTTGCTCATTAAAAAGCTAATGCCATGCATATGGGACACAGAAAACACAGTTAGGCCAACTACCTTAACTGCATCAGAGGTCAAAGGAGATTGTCACTCAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

132

Amino Acids

14.2

Weight (kDa)

7.76

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	280
AclWI	GGATC	2 cut(s)	89, 102
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	5 cut(s)	59, 157, 222, 258, 307
AluI	AGCT	5 cut(s)	59, 157, 222, 258, 307
AlwI	GGATC	2 cut(s)	89, 102
AoxI	GGCC	3 cut(s)	14, 268, 344
ApeKI	GCWGC	6 cut(s)	7, 59, 62, 110, 113, 116
AsuII	TTCGAA	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	27
BbvI	GCAGC	5 cut(s)	46, 74, 122, 125, 128
BciT130I	CCWGG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	6 cut(s)	8, 60, 63, 111, 114, 117
BlsI	GCNGC	6 cut(s)	9, 61, 64, 112, 115, 118
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	29, 96
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	23, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	23, 274
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseXI	GCAGC	5 cut(s)	46, 74, 122, 125, 128
BshFI	GGCC	3 cut(s)	16, 270, 346
BshNI	GGYRCC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	3 cut(s)	16, 270, 346
Bsp119I	TTCGAA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	3 cut(s)	16, 270, 346
BspLI	GGNNCC	2 cut(s)	29, 96
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	2 cut(s)	89, 102
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	23, 274
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	193, 340
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	388
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 116
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	5 cut(s)	46, 74, 122, 125, 128
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	16, 270, 346
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	220
CviAII	CATG	5 cut(s)	91, 149, 164, 215, 315
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	5 cut(s)	94, 152, 167, 218, 318
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	5 cut(s)	90, 148, 163, 214, 314
FauNDI	CATATG	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	6 cut(s)	8, 60, 63, 111, 114, 117
Fsp4HI	GCNGC	6 cut(s)	8, 60, 63, 111, 114, 117
GluI	GCNGC	6 cut(s)	8, 60, 63, 111, 114, 117
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	3 cut(s)	16, 270, 346
Hin1II	CATG	5 cut(s)	94, 152, 167, 218, 318
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	2 cut(s)	98, 261
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	6, 41, 116
HpyCH4III	ACNGT	2 cut(s)	193, 340
HpyCH4V	TGCA	5 cut(s)	62, 163, 218, 318, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 116
HpyF3I	CTNAG	1 cut(s)	388
Hsp92II	CATG	5 cut(s)	94, 152, 167, 218, 318
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	3 cut(s)	154, 181, 263
LpnPI	CCDG	6 cut(s)	27, 63, 111, 261, 274, 288
Lsp1109I	GCAGC	5 cut(s)	46, 74, 122, 125, 128
LweI	GCATC	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	2 cut(s)	281, 361
Mph1103I	ATGCAT	1 cut(s)	320
MseI	TTAA	4 cut(s)	132, 233, 300, 356
MslI	CAYNNNNRTG	2 cut(s)	204, 319
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	13, 116
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	94, 152, 167, 218, 318
NlaIV	GGNNCC	2 cut(s)	29, 96
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	320
NspI	RCATGY	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	6 cut(s)	9, 61, 64, 112, 115, 118
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	29, 96
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	94
RseI	CAYNNNNRTG	2 cut(s)	204, 319
SaqAI	TTAA	4 cut(s)	132, 233, 300, 356
SatI	GCNGC	6 cut(s)	8, 60, 63, 111, 114, 117
Sau3AI	GATC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	204, 319
Sse9I	AATT	1 cut(s)	66
SspI	AATATT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	193, 340
TaqI	TCGA	2 cut(s)	47, 243
TasI	AATT	1 cut(s)	66
Tru1I	TTAA	4 cut(s)	132, 233, 300, 356
Tru9I	TTAA	4 cut(s)	132, 233, 300, 356
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	6 cut(s)	7, 59, 62, 110, 113, 116
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	69, 180
TspRI	CASTG	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	41
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	280
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.