RchiOBHm_Chr3g0483531

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003441
Physical Location & Seq
Reverse (-)
29816282 .. 29817564
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44828

Sequence Viewer

Length: 759 bp
ATGAGCAACATCCTTCTAAATGGTAAAGATGTTGCCGGAAACACACCCCTCCATCGACTAGTCAACATACGCCTCCAAACAGCTACTGAATCTTTATTTCGCTATGGAAAAGCTCCTACTCGGTTGAGTCGGTTCATTCATGATGCTAGAGTGGATAAGATGGCTTTGAACAAGGAAGACCTAAATGCTATTGACATCATTCTTGATGATGACCATACTTTATCGGAAGTGGAGAGGCTTTGGAAGACGTACAGTGGTGCTAGACCAAGTCATCCGATCAACGATGGTGTGAGGCTAGTCGAGAATAACAAAGTTGGGAAAGATACTGAAAAGGAAGCGATAGGTGTTCTTTTGGTAGTGGCCACACTCATAGCAACAGTAACATTCGCAGCAGGTTTCACTGTACCCGGTGGTTACCAAAGTGAGAAAGGACCTGAGCAGGGTTCTGCTATTTTAACAAGAAATGCAGCTTTCAAAGCATTTGTTCTAACAAATACAATAGCCATGATTATCTCCAGCAGCACTGTGTTAGCTTACCTTATTGTCTCCTTACGAGTAGCTTTCCGGAAAATAATTGGTTTGCCATATCTGGAGAATAAAGCAGTTTCAATGTTGTGTGCCATGCTTGCAATGGTAATTGCATTCATTACCGGCACATATGCAGTGTTAGGTACTTCTTCAGTACTTGCCATTGTTGTTTGTGTGGTCGGCTTCAGTTTTTTTCTTGGATGTTCTATTTGGAATTGTAGAGGGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

252

Amino Acids

27.3

Weight (kDa)

9.06

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 109 - 222 6e-30 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 383
AccIII TCCGGA 1 cut(s) 564
AcoI YGGCCR 1 cut(s) 360
AcuI CTGAAG 2 cut(s) 663, 697
AfaI GTAC 4 cut(s) 251, 405, 673, 684
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 3 cut(s) 169, 475, 609
AhlI ACTAGT 1 cut(s) 58
AluBI AGCT 5 cut(s) 83, 113, 470, 533, 560
AluI AGCT 5 cut(s) 83, 113, 470, 533, 560
Alw26I GTCTC 1 cut(s) 550
AlwNI CAGNNNCTG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 564
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 389, 467, 519
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 408
AvaII GGWCC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 183, 251
BbvI GCAGC 3 cut(s) 401, 479, 531
BccI CCATC 3 cut(s) 60, 154, 278
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 550
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 4 cut(s) 59, 147, 261, 296
BfuAI ACCTGC 1 cut(s) 383
BisI GCNGC 3 cut(s) 390, 468, 520
BlsI GCNGC 3 cut(s) 391, 469, 521
BmcAI AGTACT 1 cut(s) 684
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 2 cut(s) 183, 251
BpmI CTGGAG 2 cut(s) 499, 611
Bpu10I CCTNAGC 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 564
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse118I RCCGGY 1 cut(s) 650
Bse3DI GCAATG 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 564
BseGI GGATG 3 cut(s) 9, 271, 734
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 426
BseXI GCAGC 3 cut(s) 401, 479, 531
BshFI GGCC 1 cut(s) 362
BsiSI CCGG 4 cut(s) 36, 408, 565, 651
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 1 cut(s) 362
Bsp13I TCCGGA 1 cut(s) 564
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 427
BspEI TCCGGA 1 cut(s) 564
BspHI TCATGA 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 1 cut(s) 650
BssAI RCCGGY 1 cut(s) 650
BssMI GATC 1 cut(s) 276
Bst4CI ACNGT 4 cut(s) 254, 379, 403, 526
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 1 cut(s) 435
BstEII GGTNACC 1 cut(s) 413
BstF5I GGATG 3 cut(s) 9, 271, 734
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 476, 626
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 401, 479, 531
BstV2I GAAGAC 2 cut(s) 183, 251
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 3 cut(s) 9, 271, 734
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 4 cut(s) 259, 399, 522, 669
BveI ACCTGC 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 627
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 650
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 4 cut(s) 250, 404, 672, 683
CviAII CATG 3 cut(s) 140, 505, 622
CviQI GTAC 4 cut(s) 250, 404, 672, 683
DdeI CTNAG 1 cut(s) 435
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 663, 697
Eco91I GGTNACC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 413
FaeI CATG 3 cut(s) 143, 508, 625
FatI CATG 3 cut(s) 139, 504, 621
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 390, 468, 520
FokI GGATG 2 cut(s) 258, 741
Fsp4HI GCNGC 3 cut(s) 390, 468, 520
FspBI CTAG 4 cut(s) 59, 147, 261, 296
GluI GCNGC 3 cut(s) 390, 468, 520
GsuI CTGGAG 2 cut(s) 499, 611
HaeIII GGCC 1 cut(s) 362
HapII CCGG 4 cut(s) 36, 408, 565, 651
Hin1II CATG 3 cut(s) 143, 508, 625
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 89, 127
HpaII CCGG 4 cut(s) 36, 408, 565, 651
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 226, 276
Hpy188III TCNNGA 6 cut(s) 140, 203, 301, 565, 590, 756
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 4 cut(s) 254, 379, 403, 526
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 467, 629, 641, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 626
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 3 cut(s) 143, 508, 625
Kpn2I TCCGGA 1 cut(s) 564
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 9 cut(s) 49, 378, 421, 425, 447, 529, 575, 578, 664
Lsp1109I GCAGC 3 cut(s) 401, 479, 531
LweI GCATC 1 cut(s) 133
MaeI CTAG 4 cut(s) 59, 147, 261, 296
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 379, 413
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 3 cut(s) 188, 256, 669
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 3 cut(s) 573, 636, 742
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 5 cut(s) 59, 83, 228, 285, 743
Mox20I TGGCCA 1 cut(s) 362
MroI TCCGGA 1 cut(s) 564
MscI TGGCCA 1 cut(s) 362
MseI TTAA 1 cut(s) 455
Msp20I TGGCCA 1 cut(s) 362
MspI CCGG 4 cut(s) 36, 408, 565, 651
MspR9I CCNGG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 641
MwoI GCNNNNNNNGC 2 cut(s) 476, 626
NciI CCSGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 658
NdeII GATC 1 cut(s) 276
NlaIII CATG 3 cut(s) 143, 508, 625
PagI TCATGA 1 cut(s) 139
PctI GAATGC 1 cut(s) 641
PfeI GAWTC 1 cut(s) 89
PflFI GACNNNGTC 1 cut(s) 267
PkrI GCNGC 3 cut(s) 391, 469, 521
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 431
PspEI GGTNACC 1 cut(s) 413
PspPI GGNCC 1 cut(s) 431
PspPPI RGGWCCY 1 cut(s) 431
PstNI CAGNNNCTG 1 cut(s) 86
PsyI GACNNNGTC 1 cut(s) 267
RsaI GTAC 4 cut(s) 251, 405, 673, 684
RsaNI GTAC 4 cut(s) 250, 404, 672, 683
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 3 cut(s) 390, 468, 520
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 431
ScaI AGTACT 1 cut(s) 684
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 408
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 3 cut(s) 573, 636, 742
SspMI CTAG 4 cut(s) 59, 147, 261, 296
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 4 cut(s) 254, 379, 403, 526
TaiI ACGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 55, 300
TasI AATT 3 cut(s) 573, 636, 742
TatI WGTACW 1 cut(s) 682
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 4 cut(s) 259, 406, 529, 669
TseI GCWGC 3 cut(s) 389, 467, 519
TspDTI ATGAA 3 cut(s) 124, 128, 634
TspRI CASTG 4 cut(s) 259, 406, 529, 669
Tth111I GACNNNGTC 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XspI CTAG 4 cut(s) 59, 147, 261, 296
ZrmI AGTACT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.