Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Reverse (-)

53522499 .. 53523170

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGATCTCTCCAAGTCGTCCATATCCGAGACTCGGAGTATTCAACCATGGACTCCAGTTGGTGATGATCGAGCCGCGATAGCCGAAACAAACCCCAACAATAATGGCGACATTGCACTACACATTGCTGCCGGATATGGGCTTGATGGTATAGTCGAAGTTCTTATTGGGGCAGCAAAAGCTCGTCATGACGATGTTGAGAAACAGGTTATAGAAGCTTGGCAAATGTTGAGGACACCCAACAAGGAGGGAGAAACTATTGGTTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

90

Amino Acids

9.63

Weight (kDa)

4.66

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	33, 138
AgsI	TTSAA	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	3 cut(s)	182, 218, 269
AluI	AGCT	3 cut(s)	182, 218, 269
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	128, 173
AsuHPI	GGTGA	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	115, 185
BccI	CCATC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	23
BisI	GCNGC	3 cut(s)	75, 129, 174
BlsI	GCNGC	3 cut(s)	76, 130, 175
BpmI	CTGGAG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 138
Bse1I	ACTGG	1 cut(s)	56
Bse3DI	GCAATG	2 cut(s)	111, 123
BseDI	CCNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	33, 138
BseMI	GCAATG	2 cut(s)	111, 123
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	115, 185
Bsh1236I	CGCG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	33, 138
BsmAI	GTCTC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	4, 67
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	187
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	111, 123
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	4, 67
BssT1I	CCWWGG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	7, 70
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	2 cut(s)	4, 67
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 179
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	115, 185
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtgI	CCRYGG	1 cut(s)	47
CciI	TCATGA	1 cut(s)	187
CviAII	CATG	2 cut(s)	48, 188
CviJI	RGCY	6 cut(s)	74, 83, 142, 182, 218, 269
CviKI_1	RGCY	6 cut(s)	74, 83, 142, 182, 218, 269
DpnI	GATC	2 cut(s)	6, 69
DpnII	GATC	2 cut(s)	4, 67
Eco130I	CCWWGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	51, 191
FaiI	YATR	6 cut(s)	23, 49, 138, 152, 189, 212
FatI	CATG	2 cut(s)	47, 187
Fnu4HI	GCNGC	3 cut(s)	75, 129, 174
Fsp4HI	GCNGC	3 cut(s)	75, 129, 174
GluI	GCNGC	3 cut(s)	75, 129, 174
GsuI	CTGGAG	1 cut(s)	39
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	2 cut(s)	51, 191
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	2 cut(s)	31, 52
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	28, 36
Hpy188III	TCNNGA	1 cut(s)	188
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 179
Hsp92II	CATG	2 cut(s)	51, 191
Kzo9I	GATC	2 cut(s)	4, 67
LpnPI	CCDG	3 cut(s)	69, 145, 191
Lsp1109I	GCAGC	2 cut(s)	115, 185
MalI	GATC	2 cut(s)	6, 69
MboI	GATC	2 cut(s)	4, 67
MflI	RGATCY	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	25, 46
MnlI	CCTC	2 cut(s)	225, 241
MseI	TTAA	1 cut(s)	271
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	80, 179
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	4, 67
NlaIII	CATG	2 cut(s)	51, 191
PagI	TCATGA	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	76, 130, 175
PleI	GAGTC	2 cut(s)	25, 46
PpsI	GAGTC	2 cut(s)	25, 46
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	271
SatI	GCNGC	3 cut(s)	75, 129, 174
Sau3AI	GATC	2 cut(s)	4, 67
SchI	GAGTC	2 cut(s)	25, 46
SetI	ASST	4 cut(s)	184, 210, 220, 271
SmiMI	CAYNNNNRTG	1 cut(s)	192
SsiI	CCGC	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	47
TaqI	TCGA	2 cut(s)	70, 156
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	271
Tru9I	TTAA	1 cut(s)	271
TseI	GCWGC	2 cut(s)	128, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.