Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00211

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Reverse (-)

25300 .. 27431

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGCAACCTGAGAATCATGTCGTCCTGGACCAGACGTTGAAGCCCTTTTACCAGAGGGCCTCCGAAGCCGAGGTTGAGAGGATTGTCCCTGGATCAATACCATCAACTGTAGAGGGACCTGTTGTTCTCGCTGTCAACAAAGCAGATGGAGATGAAGAGCGGCTGGGAATAACATTGTGGGAGTTGTTCTTCTGGCTTCCTCACTTGTCTCATCTTGGTGTCAGGGCTCAACAAATATGTCTTCTCTGTCCAAATGTGACAGTCATTGAAATGTCAGGGCTCGACAAGTACGTCTTGTCCATCCAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

104

Amino Acids

11.63

Weight (kDa)

4.84

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	163
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	103
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	43, 272
AjnI	CCWGG	2 cut(s)	27, 91
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	31, 60, 119
AvaII	GGWCC	2 cut(s)	31, 119
BanII	GRGCYC	2 cut(s)	232, 285
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	1 cut(s)	236
BccI	CCATC	3 cut(s)	112, 143, 311
BciT130I	CCWGG	2 cut(s)	29, 93
BcoDI	GTCTC	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	29, 93
Bme18I	GGWCC	2 cut(s)	31, 119
BmgT120I	GGNCC	3 cut(s)	31, 60, 119
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	29, 93
BpiI	GAAGAC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	72, 91
BseBI	CCWGG	2 cut(s)	29, 93
BseDI	CCNNGG	2 cut(s)	72, 91
BseGI	GGATG	1 cut(s)	303
BseYI	CCCAGC	1 cut(s)	166
BshFI	GGCC	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	74, 132
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	2 cut(s)	74, 132
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	232, 285
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	72, 91
BssMI	GATC	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	29, 93
Bst4CI	ACNGT	2 cut(s)	112, 265
Bst6I	CTCTTC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	2 cut(s)	29, 93
BstSCI	CCNGG	2 cut(s)	27, 91
BstSFI	CTRYAG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	303
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	31, 60, 119
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	7 cut(s)	46, 62, 71, 166, 199, 230, 283
CviKI_1	RGCY	7 cut(s)	46, 62, 71, 166, 199, 230, 283
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	232, 285
Eco47I	GGWCC	2 cut(s)	31, 119
EcoO109I	RGGNCCY	2 cut(s)	60, 119
EcoRII	CCWGG	2 cut(s)	27, 91
EcoT38I	GRGCYC	2 cut(s)	232, 285
FaeI	CATG	1 cut(s)	23
FaiI	YATR	2 cut(s)	21, 241
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	2 cut(s)	74, 132
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	2 cut(s)	232, 285
Fsp4HI	GCNGC	1 cut(s)	164
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	164
GsaI	CCCAGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	112, 265
HpyCH4IV	ACGT	2 cut(s)	38, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	2 cut(s)	38, 294
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	95
LguI	GCTCTTC	1 cut(s)	153
MaeII	ACGT	2 cut(s)	38, 294
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	97
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	1 cut(s)	95
MboII	GAAGA	3 cut(s)	170, 184, 236
MhlI	GDGCHC	2 cut(s)	232, 285
MnlI	CCTC	6 cut(s)	51, 67, 73, 75, 109, 213
MslI	CAYNNNNRTG	3 cut(s)	219, 272, 308
MspR9I	CCNGG	2 cut(s)	29, 93
MvaI	CCWGG	2 cut(s)	29, 93
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	165
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	27, 91
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	27, 91
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	3 cut(s)	31, 60, 119
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	3 cut(s)	219, 272, 308
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	95
Sau96I	GGNCC	3 cut(s)	31, 60, 119
ScrFI	CCNGG	2 cut(s)	29, 93
SduI	GDGCHC	2 cut(s)	232, 285
SetI	ASST	5 cut(s)	13, 41, 78, 124, 297
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	31, 119
SmiMI	CAYNNNNRTG	3 cut(s)	219, 272, 308
SsiI	CCGC	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	27, 91
TaaI	ACNGT	2 cut(s)	112, 265
TaiI	ACGT	2 cut(s)	41, 297
TaqI	TCGA	1 cut(s)	285
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	31, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.