Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Reverse (-)

28704801 .. 28705676

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACGCAAAAATTGCTAGACAAGGAGAAGACCCTGGCACAAGCAAAAGATGAACAAGGATGGACTCCACTTCACTTTGCTGCACTCATCGGTAACAGATGGATTGTGAGCCGGCTACTAGATTGTGATAAATCAATTGCCTATATCGTTGACAAAGATGACAAGAAGACAGCTCTTCACATTGCAGCTTCCAAAGGCCATATGAAGGCGAAATTTGAAATAGCTAAGGTTGTTCAAAACCATCCATGGATGAGCAACATCCTTCTAAATGGTAAAGATGTTGCCGGAAACACACCCCTCCATCGACTAGTCAACATACGCCTCCAAACAGCTACTGAATCTTTGTTTCGCTATGGAAAAGCTCCTACTCGGTTGAGTCGGTTCATTCATGATGCTAGAGTGGATAAGATGGCTTTGAACAAGGAAGACCTAAATGCTATTGACATCATTCTTGATGATGACCATACTTTATCGGAAGTGGAGAAAGTTGGTCGTTTAGAGGCTTTGGAAGACAGCGGTGCTAGACCAAGTCATCCGATCAACGATGGTGTGAGGCTAGTCGAGAATAACAAAGTTGGGAAAGATACTGAAAAGGAAGCGATAGGTGTTCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

205

Amino Acids

23.03

Weight (kDa)

7.87

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	218, 236, 418
AhlI	ACTAGT	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	5 cut(s)	173, 188, 224, 332, 362
AluI	AGCT	5 cut(s)	173, 188, 224, 332, 362
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	80, 185
ApoI	RAATTY	1 cut(s)	212
BbsI	GAAGAC	4 cut(s)	35, 173, 432, 516
BbvI	GCAGC	2 cut(s)	67, 197
BccI	CCATC	6 cut(s)	54, 93, 249, 309, 403, 539
BciT130I	CCWGG	1 cut(s)	35
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	6 cut(s)	17, 119, 308, 396, 522, 557
BisI	GCNGC	2 cut(s)	81, 186
BlsI	GCNGC	2 cut(s)	82, 187
Bme1390I	CCNGG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	4 cut(s)	35, 173, 432, 516
Bpu10I	CCTNAGC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	33, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	33, 245
BseGI	GGATG	5 cut(s)	65, 241, 255, 258, 532
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	67, 197
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	112, 285
BslI	CCNNNNNNNGG	1 cut(s)	205
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	537
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	388
BspQI	GCTCTTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	33, 245
BssMI	GATC	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	5 cut(s)	65, 241, 255, 258, 532
BstKTI	GATC	1 cut(s)	540
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	67, 197
BstV2I	GAAGAC	4 cut(s)	35, 173, 432, 516
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	5 cut(s)	65, 241, 255, 258, 532
Cac8I	GCNNGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	335
CciI	TCATGA	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	111
CseI	GACGC	1 cut(s)	13
CviAII	CATG	2 cut(s)	246, 389
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	2 cut(s)	249, 392
FaiI	YATR	8 cut(s)	144, 201, 203, 247, 317, 354, 390, 465
FatI	CATG	2 cut(s)	245, 388
FauNDI	CATATG	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	81, 186
FokI	GGATG	5 cut(s)	72, 228, 245, 262, 519
Fsp4HI	GCNGC	2 cut(s)	81, 186
FspBI	CTAG	6 cut(s)	17, 119, 308, 396, 522, 557
GluI	GCNGC	2 cut(s)	81, 186
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	2 cut(s)	112, 285
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	249, 392
HincII	GTYRAC	2 cut(s)	151, 313
HindII	GTYRAC	2 cut(s)	151, 313
HinfI	GANTC	3 cut(s)	64, 338, 376
HpaII	CCGG	2 cut(s)	112, 285
Hpy166II	GTNNAC	2 cut(s)	151, 313
Hpy188I	TCNGA	2 cut(s)	475, 537
Hpy188III	TCNNGA	3 cut(s)	389, 452, 562
Hpy8I	GTNNAC	2 cut(s)	151, 313
HpyAV	CCTTC	2 cut(s)	199, 272
HpyCH4V	TGCA	2 cut(s)	83, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	249, 392
KroI	GCCGGC	1 cut(s)	111
KroNI	GCCGGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	537
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	4 cut(s)	20, 47, 125, 298
Lsp1109I	GCAGC	2 cut(s)	67, 197
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	6 cut(s)	17, 119, 308, 396, 522, 557
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	5 cut(s)	40, 167, 178, 437, 521
MfeI	CAATTG	1 cut(s)	135
MluCI	AATT	3 cut(s)	11, 135, 212
MlyI	GAGTC	2 cut(s)	58, 385
MnlI	CCTC	4 cut(s)	308, 332, 493, 546
MroNI	GCCGGC	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	516
MspI	CCGG	2 cut(s)	112, 285
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	13
NaeI	GCCGGC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	201
NdeII	GATC	1 cut(s)	537
NgoMIV	GCCGGC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	249, 392
PagI	TCATGA	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	338
PflFI	GACNNNGTC	1 cut(s)	528
PkrI	GCNGC	2 cut(s)	82, 187
PleI	GAGTC	2 cut(s)	58, 384
PpsI	GAGTC	2 cut(s)	58, 384
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	335
PsyI	GACNNNGTC	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	2 cut(s)	81, 186
Sau3AI	GATC	1 cut(s)	537
SchI	GAGTC	2 cut(s)	58, 385
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	8 cut(s)	175, 190, 226, 231, 334, 364, 432, 607
SfaNI	GCATC	1 cut(s)	382
SpeI	ACTAGT	1 cut(s)	307
Sse9I	AATT	3 cut(s)	11, 135, 212
SsiI	CCGC	1 cut(s)	516
SspMI	CTAG	6 cut(s)	17, 119, 308, 396, 522, 557
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	245
TaqI	TCGA	2 cut(s)	304, 561
TasI	AATT	3 cut(s)	11, 135, 212
TfiI	GAWTC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	80, 185
TspDTI	ATGAA	4 cut(s)	66, 218, 373, 377
Tth111I	GACNNNGTC	1 cut(s)	528
XapI	RAATTY	1 cut(s)	212
XspI	CTAG	6 cut(s)	17, 119, 308, 396, 522, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.