RchiOBHm_Chr3g0483541

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003441
Physical Location & Seq
Reverse (-)
29817566 .. 29818485
920 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44829

Sequence Viewer

Length: 621 bp
ATGCAAGCTACCCAACCTCAACAAAACTCGGAAAGTTTGACATCTCCAGATATGACCTCCCTGGTCGATCTACTTGCTGATTTGCTCATTAAAAAGCTAATGCCATACATATGGGACACAGAAAACACAGTTAGGCCAACTACCTTAACTGCATCCCAAGTACAGAGGTCAAAGGAGATTGTCACTCAGTTGCTTGAAGTGTGTCCAGAGCTACTTTTGCAGCCCAACAATAATGGCGACATTGCACTACACATTGCGGCCAGATATGGGCTTGATGGTATAGTTGAAGTTCTTATTGGGGCAGCAAAAGCTCGTCATGGCGATGTTGAGAAACAGGTTGAAGAAGCTTGGCAAATGTTGAGGACACCCAACAAGGAGGAAGACACAGCCCTACACGAGGCAGCGCGCTTTAATCACCTCGGTGTGGTGAAGAGATTGTGCAGAGAATACCCTGATTTCTCCTACTCGGCTAATGTTGCTGGAAAGACTCCAATTTACTTGGCTGCTGAAAGGGGATATCGAGACCTGGTTTCTGAAATACTGGATTCTTGTACTTATCCAGGTTACCAAGGCCCTAGTGGTAAAACAGCTTTACATGCTAGCTGCAGTGATCTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

206

Amino Acids

22.83

Weight (kDa)

5.12

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 123 - 182 2.6e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 406
AciI CCGC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 599
AfaI GTAC 2 cut(s) 162, 553
AfiI CCNNNNNNNGG 3 cut(s) 267, 397, 424
AgsI TTSAA 3 cut(s) 197, 287, 341
AjnI CCWGG 3 cut(s) 60, 525, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AleI CACNNNNGTG 1 cut(s) 420
AluBI AGCT 7 cut(s) 8, 97, 211, 311, 347, 590, 603
AluI AGCT 7 cut(s) 8, 97, 211, 311, 347, 590, 603
Alw26I GTCTC 1 cut(s) 516
AoxI GGCC 3 cut(s) 134, 258, 571
ApeKI GCWGC 5 cut(s) 220, 302, 401, 503, 603
AspLEI GCGC 2 cut(s) 406, 408
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 407, 439
AsuNHI GCTAGC 1 cut(s) 599
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 387
BbvI GCAGC 5 cut(s) 232, 314, 413, 490, 590
BccI CCATC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 3 cut(s) 62, 527, 561
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 2 cut(s) 576, 600
BfmI CTRYAG 1 cut(s) 604
BisI GCNGC 6 cut(s) 221, 258, 303, 402, 504, 604
BlsI GCNGC 6 cut(s) 222, 259, 304, 403, 505, 605
Bme1390I CCNGG 3 cut(s) 62, 527, 561
BmgT120I GGNCC 1 cut(s) 572
BmrFI CCNGG 3 cut(s) 62, 527, 561
BmsI GCATC 1 cut(s) 161
BmtI GCTAGC 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 3 cut(s) 60, 418, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 397, 424
Bse1I ACTGG 1 cut(s) 546
Bse3DI GCAATG 2 cut(s) 240, 252
BseBI CCWGG 3 cut(s) 62, 527, 561
BseDI CCNNGG 3 cut(s) 60, 418, 568
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 3 cut(s) 267, 397, 424
BseMI GCAATG 2 cut(s) 240, 252
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 546
BsePI GCGCGC 1 cut(s) 404
BseXI GCAGC 5 cut(s) 232, 314, 413, 490, 590
BsgI GTGCAG 1 cut(s) 460
Bsh1236I CGCG 1 cut(s) 406
BshFI GGCC 3 cut(s) 136, 260, 573
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 3 cut(s) 267, 397, 424
BsmAI GTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 3 cut(s) 136, 260, 573
Bso31I GGTCTC 1 cut(s) 516
Bsp143I GATC 2 cut(s) 67, 610
BspACI CCGC 1 cut(s) 257
BspANI GGCC 3 cut(s) 136, 260, 573
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 608
BspOI GCTAGC 1 cut(s) 603
BspTNI GGTCTC 1 cut(s) 516
BsrDI GCAATG 2 cut(s) 240, 252
BsrI ACTGG 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 60, 418, 568
BssHII GCGCGC 1 cut(s) 404
BssMI GATC 2 cut(s) 67, 610
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 568
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 3 cut(s) 62, 527, 561
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 6, 406, 601
BstDEI CTNAG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 563
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 406
BstHHI GCGC 2 cut(s) 406, 408
BstKTI GATC 2 cut(s) 70, 613
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 2 cut(s) 67, 610
BstMWI GCNNNNNNNGC 4 cut(s) 217, 308, 476, 596
BstNI CCWGG 3 cut(s) 62, 527, 561
BstNSI RCATGY 1 cut(s) 599
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 3 cut(s) 60, 525, 559
BstSFI CTRYAG 1 cut(s) 604
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 5 cut(s) 232, 314, 413, 490, 590
BstV2I GAAGAC 1 cut(s) 387
BstXI CCANNNNNNTGG 1 cut(s) 111
BsuRI GGCC 3 cut(s) 136, 260, 573
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 613
Cac8I GCNNGC 3 cut(s) 6, 406, 601
CfoI GCGC 2 cut(s) 406, 408
Cfr13I GGNCC 1 cut(s) 572
CsiI ACCWGGT 1 cut(s) 525
Csp6I GTAC 2 cut(s) 161, 552
CviAII CATG 2 cut(s) 317, 596
CviQI GTAC 2 cut(s) 161, 552
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 69, 612
DpnII GATC 2 cut(s) 67, 610
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 568
Eco31I GGTCTC 1 cut(s) 516
Eco32I GATATC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 563
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 3 cut(s) 60, 525, 559
EcoRV GATATC 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 2 cut(s) 320, 599
FaiI YATR 8 cut(s) 53, 106, 110, 112, 267, 281, 318, 597
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 316, 595
FauNDI CATATG 1 cut(s) 110
Fnu4HI GCNGC 6 cut(s) 221, 258, 303, 402, 504, 604
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 6 cut(s) 221, 258, 303, 402, 504, 604
FspBI CTAG 2 cut(s) 576, 600
GlaI GCGC 2 cut(s) 405, 407
GluI GCNGC 6 cut(s) 221, 258, 303, 402, 504, 604
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 3 cut(s) 136, 260, 573
HhaI GCGC 2 cut(s) 406, 408
Hin1II CATG 2 cut(s) 320, 599
Hin6I GCGC 2 cut(s) 404, 406
HinP1I GCGC 2 cut(s) 404, 406
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 2 cut(s) 487, 545
HphI GGTGA 2 cut(s) 407, 439
Hpy188I TCNGA 2 cut(s) 31, 535
Hpy188III TCNNGA 3 cut(s) 47, 206, 521
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 6 cut(s) 4, 152, 220, 245, 441, 606
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 308, 476, 596
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 2 cut(s) 320, 599
HspAI GCGC 2 cut(s) 404, 406
Kzo9I GATC 2 cut(s) 67, 610
Lsp1109I GCAGC 5 cut(s) 232, 314, 413, 490, 590
LweI GCATC 1 cut(s) 161
MabI ACCWGGT 1 cut(s) 525
MaeI CTAG 2 cut(s) 576, 600
MaeIII GTNAC 2 cut(s) 181, 563
MalI GATC 2 cut(s) 69, 612
MboI GATC 2 cut(s) 67, 610
MboII GAAGA 4 cut(s) 353, 392, 442, 605
MluCI AATT 1 cut(s) 492
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 7 cut(s) 27, 67, 159, 354, 370, 391, 428
MseI TTAA 3 cut(s) 90, 146, 411
MslI CAYNNNNRTG 3 cut(s) 109, 321, 420
MspR9I CCNGG 3 cut(s) 62, 527, 561
MvaI CCWGG 3 cut(s) 62, 527, 561
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 4 cut(s) 217, 308, 476, 596
NdeI CATATG 1 cut(s) 110
NdeII GATC 2 cut(s) 67, 610
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 2 cut(s) 320, 599
NmeAIII GCCGAG 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 599
OliI CACNNNNGTG 1 cut(s) 420
PauI GCGCGC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 545
PkrI GCNGC 6 cut(s) 222, 259, 304, 403, 505, 605
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
Psp6I CCWGG 3 cut(s) 60, 525, 559
PspEI GGTNACC 1 cut(s) 563
PspGI CCWGG 3 cut(s) 60, 525, 559
PspPI GGNCC 1 cut(s) 572
PstI CTGCAG 1 cut(s) 608
PteI GCGCGC 1 cut(s) 404
RsaI GTAC 2 cut(s) 162, 553
RsaNI GTAC 2 cut(s) 161, 552
RseI CAYNNNNRTG 3 cut(s) 109, 321, 420
SaqAI TTAA 3 cut(s) 90, 146, 411
SatI GCNGC 6 cut(s) 221, 258, 303, 402, 504, 604
Sau3AI GATC 2 cut(s) 67, 610
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 3 cut(s) 62, 527, 561
SexAI ACCWGGT 1 cut(s) 525
SfaNI GCATC 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 604
SmiMI CAYNNNNRTG 3 cut(s) 109, 321, 420
Sse9I AATT 1 cut(s) 492
SsiI CCGC 1 cut(s) 257
SspMI CTAG 2 cut(s) 576, 600
StyD4I CCNGG 3 cut(s) 60, 525, 559
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 66, 520
TasI AATT 1 cut(s) 492
TatI WGTACW 2 cut(s) 160, 551
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 3 cut(s) 90, 146, 411
Tru9I TTAA 3 cut(s) 90, 146, 411
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 5 cut(s) 220, 302, 401, 503, 603
Tsp45I GTSAC 1 cut(s) 181
TspRI CASTG 1 cut(s) 613
XagI CCTNNNNNAGG 1 cut(s) 395
XceI RCATGY 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XspI CTAG 2 cut(s) 576, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.