Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Reverse (-)

10010322 .. 10013419

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1082300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGGAGAGTGAGAGTCGAAGCGTCCCCGAAGAGACCTTGAAGCCCTTTTACCAGAGGGCCTCTGAAGCCGAGGACCGCTTATCAAGACTTGAAGCTGCCCTCGCAAGCAAGAAGGATTCTGCAACAGATGGTTCTTCAAAGGTGATCAACGAACTCCAGTCACAGATAAAAGATGCATGTGCGAAGGTGTCTTTAGAAGAAGAAAAGAACAAGAAGCTTGCTGCTGAAAATGCAAAGCTCCAATACCGCATACAGCATCTTGTTCAGGCAGTGAGAGATGGTGATGACAAGTTGGAGAAAATGAAAGAAACGATGCACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.18

Weight (kDa)

5.52

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 79, 250
AcuI	CTGAAG	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	43, 95, 141
AluBI	AGCT	3 cut(s)	98, 220, 241
AluI	AGCT	3 cut(s)	98, 220, 241
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	98, 224
AspS9I	GGNCC	2 cut(s)	60, 76
AsuHPI	GGTGA	2 cut(s)	157, 296
AvaII	GGWCC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BauI	CACGAG	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	85, 211
BccI	CCATC	2 cut(s)	125, 275
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	99, 225
BlsI	GCNGC	2 cut(s)	100, 226
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	60, 76
BmsI	GCATC	3 cut(s)	166, 268, 306
BpmI	CTGGAG	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	85, 211
BshFI	GGCC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	3 cut(s)	5, 79, 250
BspANI	GGCC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	109, 222
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 104, 233
BstNSI	RCATGY	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	85, 211
BsuRI	GGCC	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	109, 222
Cfr13I	GGNCC	2 cut(s)	60, 76
CseI	GACGC	1 cut(s)	13
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	6 cut(s)	46, 62, 71, 98, 220, 241
CviKI_1	RGCY	6 cut(s)	46, 62, 71, 98, 220, 241
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	1 cut(s)	183
FaiI	YATR	2 cut(s)	181, 254
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	99, 225
Fsp4HI	GCNGC	2 cut(s)	99, 225
GluI	GCNGC	2 cut(s)	99, 225
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	62
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	16, 119
HphI	GGTGA	2 cut(s)	157, 296
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	109, 181
HpyCH4V	TGCA	4 cut(s)	125, 179, 236, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 104, 233
Hsp92II	CATG	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	3 cut(s)	68, 173, 254
Lsp1109I	GCAGC	2 cut(s)	85, 211
LweI	GCATC	3 cut(s)	166, 268, 306
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	44, 129, 212, 215
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	4 cut(s)	51, 67, 73, 113
Mph1103I	ATGCAT	1 cut(s)	181
MwoI	GCNNNNNNNGC	3 cut(s)	68, 104, 233
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	183
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	100, 226
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	60, 76
SatI	GCNGC	2 cut(s)	99, 225
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	2 cut(s)	60, 76
SchI	GAGTC	1 cut(s)	25
SetI	ASST	6 cut(s)	41, 100, 147, 192, 222, 243
SfaNI	GCATC	3 cut(s)	166, 268, 306
SinI	GGWCC	1 cut(s)	76
SsiI	CCGC	3 cut(s)	5, 79, 250
TaqI	TCGA	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	2 cut(s)	98, 224
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.