Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000555.1

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Forward (+)

93057 .. 96684

Gene Structure 3628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000555.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggcgcaacctgagaatcctgtcatcctggaccagacgttgaatcccttttaccagagggcctccgaagccgaggaccgcttaacaagacttgaagctgcccttgctagtaacaaagattctggaaataaggatcattcaaagttgatcagtgaactccaagaagagaacaagaagctcgctgcagagaatgcaaagctccagtaccgcataaaccaccttgttcaggcagtcagagatgctgatgtcaagttagagaaaaaggcaatatcgatgcccgacgacaacacggagagcatcttcaccaaatgtctactccaagaaaaggactcctattgtgacccccaaataaacagactctgctacaacattaattttattagtgaaaatgctctatatgatgtacccgttgttcctctcttcacaggccatttcaacgattccaattttctgatgtttgcaatcaaaagctcacatgcattggtcaagccgaaaccaacgtgccttccaagttctggttcgaagaatgaagctgcagcaattagcaacacaggtttaggtggcatggatccagagatattcgcagcagcagccgaaggaaatattaaagccctttcaacacatggggagcttctgcatgaaatactcactccaaccaaaaacaccgtcctacatatttatgtagcacatgcaagctacccaacctcaacaaaactcggaaagtttgacatctccagatatggcctccctggtctacttgctgatttgctcattaaaaagctaatgccatacatatgggacacagaaaacacagttaggccaactaccttaactgcatcccaagtacagaggtcaaaggagattgtcactcagttgcttgaagtgtgtccagagctacttttgcagcccaacaataatggcgacattgcactacacattgcggccagatatgggcttgatggtatagttgaagttcttattggggcagcaaaagctcgtcatggcgatgttgagaaacaggttgaagaagcttggcaaatgttgaggacacccaacaagaggaggaagacacagccctacacgaggcagcgcgctttaatcacctcggtgtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

371

Amino Acids

41.31

Weight (kDa)

6.57

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccI	GTMKAC	2 cut(s)	313, 754
AccII	CGCG	1 cut(s)	1092
AciI	CCGC	3 cut(s)	79, 208, 941
AclWI	GGATC	3 cut(s)	141, 563, 576
AcoI	YGGCCR	1 cut(s)	942
AfaI	GTAC	3 cut(s)	206, 405, 846
AfiI	CCNNNNNNNGG	7 cut(s)	226, 325, 515, 951, 1059, 1083, 1110
AgsI	TTSAA	8 cut(s)	43, 95, 141, 436, 618, 881, 971, 1025
AjnI	CCWGG	2 cut(s)	27, 748
AjuI	GAANNNNNNNTTGG	4 cut(s)	502, 534, 963, 995
AleI	CACNNNNGTG	1 cut(s)	1106
AlwI	GGATC	3 cut(s)	141, 563, 576
AlwNI	CAGNNNCTG	1 cut(s)	360
AoxI	GGCC	5 cut(s)	60, 427, 742, 818, 942
ArsI	GACNNNNNNTTYG	2 cut(s)	651, 683
AseI	ATTAAT	1 cut(s)	372
AspLEI	GCGC	3 cut(s)	7, 1092, 1094
AspS9I	GGNCC	3 cut(s)	31, 60, 76
AsuHPI	GGTGA	2 cut(s)	295, 1093
AsuII	TTCGAA	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	31, 76
BamHI	GGATCC	1 cut(s)	568
BauI	CACGAG	1 cut(s)	1081
BbsI	GAAGAC	1 cut(s)	1073
BccI	CCATC	1 cut(s)	953
BciT130I	CCWGG	2 cut(s)	29, 750
BclI	TGATCA	1 cut(s)	147
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	2 cut(s)	183, 534
Bme1390I	CCNGG	2 cut(s)	29, 750
Bme18I	GGWCC	2 cut(s)	31, 76
BmgT120I	GGNCC	3 cut(s)	31, 60, 76
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	29, 750
BmsI	GCATC	4 cut(s)	229, 264, 306, 845
BpiI	GAAGAC	1 cut(s)	1073
BpmI	CTGGAG	2 cut(s)	185, 718
Bpu14I	TTCGAA	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	72, 748, 1104
Bsc4I	CCNNNNNNNGG	7 cut(s)	226, 325, 515, 951, 1059, 1083, 1110
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	2 cut(s)	924, 936
BseBI	CCWGG	2 cut(s)	29, 750
BseCI	ATCGAT	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	72, 748, 1104
BseGI	GGATG	2 cut(s)	24, 836
BseLI	CCNNNNNNNGG	7 cut(s)	226, 325, 515, 951, 1059, 1083, 1110
BseMI	GCAATG	2 cut(s)	924, 936
BseMII	CTCAG	1 cut(s)	884
BseNI	ACTGG	1 cut(s)	202
BsePI	GCGCGC	1 cut(s)	1090
BseRI	GAGGAG	1 cut(s)	1075
Bsh1236I	CGCG	1 cut(s)	1092
BshFI	GGCC	5 cut(s)	62, 429, 744, 820, 944
BshVI	ATCGAT	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	812
BslI	CCNNNNNNNGG	7 cut(s)	226, 325, 515, 951, 1059, 1083, 1110
BsmFI	GGGAC	1 cut(s)	812
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	5 cut(s)	62, 429, 744, 820, 944
Bsp119I	TTCGAA	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	133, 147, 568
BspACI	CCGC	3 cut(s)	79, 208, 941
BspANI	GGCC	5 cut(s)	62, 429, 744, 820, 944
BspCNI	CTCAG	2 cut(s)	4, 883
BspDI	ATCGAT	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	1092
BspLI	GGNNCC	1 cut(s)	570
BspMAI	CTGCAG	2 cut(s)	187, 538
BspPI	GGATC	3 cut(s)	141, 563, 576
BspT104I	TTCGAA	1 cut(s)	521
BsrDI	GCAATG	2 cut(s)	924, 936
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	72, 748, 1104
BssHII	GCGCGC	1 cut(s)	1090
BssMI	GATC	3 cut(s)	133, 147, 568
BssSI	CACGAG	1 cut(s)	1081
Bst2BI	CACGAG	1 cut(s)	1081
Bst2UI	CCWGG	2 cut(s)	29, 750
Bst4CI	ACNGT	2 cut(s)	667, 814
Bst6I	CTCTTC	2 cut(s)	159, 425
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	3 cut(s)	180, 694, 1092
BstDEI	CTNAG	2 cut(s)	12, 870
BstENI	CCTNNNNNAGG	2 cut(s)	224, 1081
BstF5I	GGATG	2 cut(s)	24, 836
BstFNI	CGCG	1 cut(s)	1092
BstHHI	GCGC	3 cut(s)	7, 1092, 1094
BstKTI	GATC	3 cut(s)	136, 150, 571
BstMBI	GATC	3 cut(s)	133, 147, 568
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 104, 191, 590, 901, 992
BstNI	CCWGG	2 cut(s)	29, 750
BstNSI	RCATGY	2 cut(s)	479, 692
BstSCI	CCNGG	2 cut(s)	27, 748
BstSFI	CTRYAG	2 cut(s)	183, 534
BstUI	CGCG	1 cut(s)	1092
BstV2I	GAAGAC	1 cut(s)	1073
BstX2I	RGATCY	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	795
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	272
BsuRI	GGCC	5 cut(s)	62, 429, 744, 820, 944
BsuTUI	ATCGAT	1 cut(s)	272
BtgZI	GCGATG	1 cut(s)	1020
BtsCI	GGATG	2 cut(s)	24, 836
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	180, 694, 1092
CaiI	CAGNNNCTG	1 cut(s)	360
CfoI	GCGC	3 cut(s)	7, 1092, 1094
Cfr13I	GGNCC	3 cut(s)	31, 60, 76
ClaI	ATCGAT	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	205, 404, 845
CviAII	CATG	6 cut(s)	476, 565, 623, 638, 689, 1001
CviQI	GTAC	3 cut(s)	205, 404, 845
DdeI	CTNAG	2 cut(s)	12, 870
DpnI	GATC	3 cut(s)	135, 149, 570
DpnII	GATC	3 cut(s)	133, 147, 568
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	2 cut(s)	159, 425
EarI	CTCTTC	2 cut(s)	159, 425
Eco47I	GGWCC	2 cut(s)	31, 76
EcoNI	CCTNNNNNAGG	2 cut(s)	224, 1081
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	27, 748
EcoT22I	ATGCAT	1 cut(s)	481
FaeI	CATG	6 cut(s)	479, 568, 626, 641, 692, 1004
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	6 cut(s)	475, 564, 622, 637, 688, 1000
FauNDI	CATATG	1 cut(s)	794
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	2 cut(s)	313, 754
FokI	GGATG	2 cut(s)	11, 823
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	3 cut(s)	6, 1091, 1093
GsuI	CTGGAG	2 cut(s)	185, 718
HaeIII	GGCC	5 cut(s)	62, 429, 744, 820, 944
HhaI	GCGC	3 cut(s)	7, 1092, 1094
Hin1II	CATG	6 cut(s)	479, 568, 626, 641, 692, 1004
Hin6I	GCGC	3 cut(s)	5, 1090, 1092
HinP1I	GCGC	3 cut(s)	5, 1090, 1092
HindIII	AAGCTT	1 cut(s)	1029
HinfI	GANTC	6 cut(s)	16, 43, 119, 329, 357, 440
HphI	GGTGA	2 cut(s)	295, 1093
Hpy166II	GTNNAC	3 cut(s)	155, 314, 755
Hpy188I	TCNGA	4 cut(s)	67, 236, 453, 719
Hpy188III	TCNNGA	4 cut(s)	123, 572, 735, 890
Hpy8I	GTNNAC	3 cut(s)	155, 314, 755
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	515, 590
HpyCH4III	ACNGT	2 cut(s)	667, 814
HpyCH4IV	ACGT	2 cut(s)	38, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 104, 191, 590, 901, 992
HpyF3I	CTNAG	2 cut(s)	12, 870
HpySE526I	ACGT	2 cut(s)	38, 500
Hsp92II	CATG	6 cut(s)	479, 568, 626, 641, 692, 1004
HspAI	GCGC	3 cut(s)	5, 1090, 1092
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	133, 147, 568
LmnI	GCTCC	2 cut(s)	204, 628
LweI	GCATC	4 cut(s)	229, 264, 306, 845
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	2 cut(s)	38, 500
MaeIII	GTNAC	3 cut(s)	110, 338, 865
MalI	GATC	3 cut(s)	135, 149, 570
MboI	GATC	3 cut(s)	133, 147, 568
MboII	GAAGA	6 cut(s)	176, 292, 412, 535, 1037, 1078
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	3 cut(s)	373, 445, 540
MlyI	GAGTC	2 cut(s)	323, 351
MmeI	TCCRAC	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	6 cut(s)	83, 372, 606, 774, 830, 1097
MslI	CAYNNNNRTG	4 cut(s)	678, 793, 1005, 1106
MspR9I	CCNGG	2 cut(s)	29, 750
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	2 cut(s)	29, 750
MvnI	CGCG	1 cut(s)	1092
MwoI	GCNNNNNNNGC	6 cut(s)	68, 104, 191, 590, 901, 992
NdeI	CATATG	1 cut(s)	794
NdeII	GATC	3 cut(s)	133, 147, 568
NlaIII	CATG	6 cut(s)	479, 568, 626, 641, 692, 1004
NlaIV	GGNNCC	1 cut(s)	570
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	2 cut(s)	338, 865
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	2 cut(s)	479, 692
NspV	TTCGAA	1 cut(s)	521
OliI	CACNNNNGTG	1 cut(s)	1106
PauI	GCGCGC	1 cut(s)	1090
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	4 cut(s)	16, 43, 119, 440
PflMI	CCANNNNNTGG	1 cut(s)	515
PfoI	TCCNGGA	1 cut(s)	27
PleI	GAGTC	2 cut(s)	323, 351
PpsI	GAGTC	2 cut(s)	323, 351
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	27, 748
PspGI	CCWGG	2 cut(s)	27, 748
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	3 cut(s)	31, 60, 76
PsrI	GAACNNNNNNTAC	2 cut(s)	396, 428
PstI	CTGCAG	2 cut(s)	187, 538
PstNI	CAGNNNCTG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	568
PteI	GCGCGC	1 cut(s)	1090
RsaI	GTAC	3 cut(s)	206, 405, 846
RsaNI	GTAC	3 cut(s)	205, 404, 845
RseI	CAYNNNNRTG	4 cut(s)	678, 793, 1005, 1106
SaqAI	TTAA	6 cut(s)	83, 372, 606, 774, 830, 1097
Sau3AI	GATC	3 cut(s)	133, 147, 568
Sau96I	GGNCC	3 cut(s)	31, 60, 76
SchI	GAGTC	2 cut(s)	323, 351
ScrFI	CCNGG	2 cut(s)	29, 750
SfaNI	GCATC	4 cut(s)	229, 264, 306, 845
SfcI	CTRYAG	2 cut(s)	183, 534
SfuI	TTCGAA	1 cut(s)	521
SinI	GGWCC	2 cut(s)	31, 76
SmiMI	CAYNNNNRTG	4 cut(s)	678, 793, 1005, 1106
Sse9I	AATT	3 cut(s)	373, 445, 540
SsiI	CCGC	3 cut(s)	79, 208, 941
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	27, 748
TaaI	ACNGT	2 cut(s)	667, 814
TaiI	ACGT	2 cut(s)	41, 503
TaqI	TCGA	2 cut(s)	272, 521
TasI	AATT	3 cut(s)	373, 445, 540
TatI	WGTACW	1 cut(s)	844
TauI	GCSGC	1 cut(s)	944
TfiI	GAWTC	4 cut(s)	16, 43, 119, 440
Tru1I	TTAA	6 cut(s)	83, 372, 606, 774, 830, 1097
Tru9I	TTAA	6 cut(s)	83, 372, 606, 774, 830, 1097
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	338, 865
Tsp45I	GTSAC	2 cut(s)	338, 865
TspDTI	ATGAA	2 cut(s)	543, 654
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	31, 76
VspI	ATTAAT	1 cut(s)	372
XagI	CCTNNNNNAGG	2 cut(s)	224, 1081
XceI	RCATGY	2 cut(s)	479, 692
XmiI	GTMKAC	2 cut(s)	313, 754
XspI	CTAG	1 cut(s)	108
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.