Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Reverse (-)

52972240 .. 52974525

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1429100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAAATTTCCTGTGTGGGAGTGTTGTGCATCATTTCTCACACTTTGTGCGTCTTTAGATTTATGGTGCAGAAACTGTTTTCACTTGTGGATCAGACTTCTGTGCCAGACAACCCAGATTCCTTGCAAAATCATGAAGTCCTACTCCCTGGTCACTTGATTACAATATATCTCAAGGAAAAACTAGAAGAGTGGTTGCAAAGGACGAAAAAGCTTATTGAAGATGAGATCAACAAAAACAAGGACTATGAGTTTGGCAACGTAGCTAGAGTAAAGAAGCTTATGGATAAAAATCCTGCAAAGCAGATCAGTTTAGCTGTTGAAAATATGTTGGAAACTGGAAGACTTAATACCCCAATCTGGTCTAGATTTGCAGCAGAGGGCAGGCTTGACGGTTCAGTCAGAGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

138

Amino Acids

15.7

Weight (kDa)

7.72

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	6
AdeI	CACNNNGTG	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	221, 323
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	4 cut(s)	214, 266, 280, 317
AluI	AGCT	4 cut(s)	214, 266, 280, 317
AlwI	GGATC	1 cut(s)	99
AlwNI	CAGNNNCTG	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
BarI	GAAGNNNNNNTAC	2 cut(s)	334, 366
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	386
BciT130I	CCWGG	1 cut(s)	150
BfaI	CTAG	3 cut(s)	185, 267, 366
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	91, 228, 306
BspHI	TCATGA	1 cut(s)	133
BspPI	GGATC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	91, 228, 306
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	78, 395
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	386
BstKTI	GATC	3 cut(s)	94, 231, 309
BstMBI	GATC	3 cut(s)	91, 228, 306
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	76
CciI	TCATGA	1 cut(s)	133
CseI	GACGC	1 cut(s)	40
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	6 cut(s)	214, 266, 280, 317, 388, 410
CviKI_1	RGCY	6 cut(s)	214, 266, 280, 317, 388, 410
DpnI	GATC	3 cut(s)	93, 230, 308
DpnII	GATC	3 cut(s)	91, 228, 306
DraIII	CACNNNGTG	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	137
FaiI	YATR	6 cut(s)	65, 135, 169, 249, 284, 329
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	3 cut(s)	185, 267, 366
GluI	GCNGC	1 cut(s)	375
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	137
HindIII	AAGCTT	2 cut(s)	212, 278
HinfI	GANTC	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	96, 404
Hpy188III	TCNNGA	2 cut(s)	134, 366
HpyCH4III	ACNGT	2 cut(s)	78, 395
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	6 cut(s)	30, 70, 127, 199, 299, 374
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	91, 228, 306
LpnPI	CCDG	9 cut(s)	25, 120, 129, 135, 162, 309, 324, 346, 370
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	3 cut(s)	185, 267, 366
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	93, 230, 308
MboI	GATC	3 cut(s)	91, 228, 306
MboII	GAAGA	3 cut(s)	200, 233, 354
MluCI	AATT	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	2 cut(s)	373, 400
MseI	TTAA	2 cut(s)	348, 412
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	91, 228, 306
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	152
PagI	TCATGA	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	348, 412
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	3 cut(s)	91, 228, 306
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	5 cut(s)	216, 264, 268, 282, 319
SfaNI	GCATC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	6
SspMI	CTAG	3 cut(s)	185, 267, 366
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	78, 395
TaiI	ACGT	1 cut(s)	264
TasI	AATT	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	348, 412
Tru9I	TTAA	2 cut(s)	348, 412
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	17, 150
XapI	RAATTY	1 cut(s)	6
XbaI	TCTAGA	1 cut(s)	365
XspI	CTAG	3 cut(s)	185, 267, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.