Prupe.7G053700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0003441
Physical Location & Seq
Forward (+)
9212658 .. 9215823
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G053700.1

Sequence Viewer

Length: 465 bp
ATGTTGAGTAGGCCCCATTGTATACGCTTATATAAACCTTCGTTTTGGTCAAAATTTTCAGCCGAAGCTATTCTGAAGAATCTGAGGAAACCCATTGCCGGACTTTTCGTCTTATTGGAAAGTCTTGGGCACCAAACTCCAAAGATGGCGTCTGAGAATCTAAGCGTTCTCGAAGAGACCTTGAAGCCCTTTTACCAGAGAGCCTCTCAAGCCGAGGACCGATTAGCAAGACTTGAGGCCGCCCTTGCAGCCAAGAAGGGTCATCCTGCAGATTCGGCAAATGATGATTATTCTGAATTGATCAATGAAATCCAGTCAAAGCTAAAAGATGCATGTGCTGAGATGGTTTTAGAACAAGAAAAGAACAAGAAGCTTGCTGCAGAAAATGCTAAACTCCAATACCGGATACATCATCTTGTTCAGGCAGTGAGAGATGCTGATGACAAATTGGAGAAAAAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.44

Weight (kDa)

8.8

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 184
AhdI GACNNNNNGTC 1 cut(s) 107
AluBI AGCT 3 cut(s) 68, 322, 373
AluI AGCT 3 cut(s) 68, 322, 373
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 2 cut(s) 11, 237
ApeKI GCWGC 2 cut(s) 248, 377
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 12, 217
AvaII GGWCC 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 129
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
BbvI GCAGC 2 cut(s) 260, 364
BccI CCATC 2 cut(s) 139, 337
BciVI GTATCC 1 cut(s) 399
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 2 cut(s) 267, 378
BfuI GTATCC 1 cut(s) 399
BisI GCNGC 3 cut(s) 240, 249, 378
BlsI GCNGC 3 cut(s) 241, 250, 379
Bme18I GGWCC 1 cut(s) 217
BmeRI GACNNNNNGTC 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 12, 217
BmiI GGNNCC 2 cut(s) 14, 131
BmsI GCATC 2 cut(s) 319, 424
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpuEI CTTGAG 2 cut(s) 192, 254
BsaHI GRCGYC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 3 cut(s) 74, 144, 330
BseNI ACTGG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 2 cut(s) 260, 364
BshFI GGCC 2 cut(s) 13, 239
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 99, 403
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 2 cut(s) 13, 239
Bso31I GGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 13, 239
BspCNI CTCAG 3 cut(s) 75, 145, 331
BspLI GGNNCC 2 cut(s) 14, 131
BspMAI CTGCAG 2 cut(s) 271, 382
BspT107I GGYRCC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 300
BssNAI GTATAC 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 149
Bst1107I GTATAC 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 4 cut(s) 83, 153, 161, 339
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 5 cut(s) 209, 245, 248, 275, 386
BstNSI RCATGY 1 cut(s) 336
BstSFI CTRYAG 2 cut(s) 267, 378
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 260, 364
BstZ17I GTATAC 1 cut(s) 23
BsuI GTATCC 1 cut(s) 399
BsuRI GGCC 2 cut(s) 13, 239
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 12, 217
CseI GACGC 1 cut(s) 138
CviAII CATG 1 cut(s) 333
DdeI CTNAG 4 cut(s) 83, 153, 161, 339
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
DriI GACNNNNNGTC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 168
Eam1105I GACNNNNNGTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 334
FaeI CATG 1 cut(s) 336
FaiI YATR 4 cut(s) 23, 31, 33, 334
FatI CATG 1 cut(s) 332
FbaI TGATCA 1 cut(s) 300
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 240, 249, 378
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 240, 249, 378
GluI GCNGC 3 cut(s) 240, 249, 378
HaeIII GGCC 2 cut(s) 13, 239
HapII CCGG 2 cut(s) 99, 403
HgaI GACGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 3 cut(s) 79, 157, 272
HpaII CCGG 2 cut(s) 99, 403
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 75, 84, 154, 295
Hpy188III TCNNGA 2 cut(s) 170, 462
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 48, 250
HpyCH4V TGCA 4 cut(s) 248, 269, 332, 380
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 245, 248, 275, 386
HpyF3I CTNAG 4 cut(s) 83, 153, 161, 339
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 1 cut(s) 300
LpnPI CCDG 6 cut(s) 112, 209, 279, 326, 407, 416
Lsp1109I GCAGC 2 cut(s) 260, 364
LweI GCATC 2 cut(s) 319, 424
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 2 cut(s) 88, 185
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 3 cut(s) 53, 296, 446
MnlI CCTC 4 cut(s) 78, 208, 214, 229
Mph1103I ATGCAT 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 69
MspI CCGG 2 cut(s) 99, 403
MwoI GCNNNNNNNGC 5 cut(s) 209, 245, 248, 275, 386
NdeII GATC 1 cut(s) 300
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 2 cut(s) 14, 131
NmeAIII GCCGAG 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 3 cut(s) 79, 157, 272
PkrI GCNGC 3 cut(s) 241, 250, 379
PspN4I GGNNCC 2 cut(s) 14, 131
PspPI GGNCC 2 cut(s) 12, 217
PstI CTGCAG 2 cut(s) 271, 382
SatI GCNGC 3 cut(s) 240, 249, 378
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 2 cut(s) 12, 217
SduI GDGCHC 1 cut(s) 132
SetI ASST 5 cut(s) 40, 70, 182, 324, 375
SfaNI GCATC 2 cut(s) 319, 424
SfcI CTRYAG 2 cut(s) 267, 378
SinI GGWCC 1 cut(s) 217
SmlI CTYRAG 2 cut(s) 207, 233
SmoI CTYRAG 2 cut(s) 207, 233
Sse9I AATT 3 cut(s) 53, 296, 446
SsiI CCGC 1 cut(s) 240
TaqI TCGA 1 cut(s) 171
TaqII GACCGA 1 cut(s) 234
TasI AATT 3 cut(s) 53, 296, 446
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 3 cut(s) 79, 157, 272
TscAI CASTG 1 cut(s) 432
TseI GCWGC 2 cut(s) 248, 377
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 336
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.