Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003441

Physical Location & Seq

Genomic Coordinates Reverse (-)

18332519 .. 18333952

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0206800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGTCATTGGTAGCACGGTTGTATAAAGCGCGCTACTATCCTTATGGTAATTTCTGGACTACTACAGCTCATGCTTCGCCTTCCTACTCATGGCGTAGCATTTTTGCAACGCGGGATTTTATCCGAACAGGTTCCTTCTGGAAGATTGGTGATGGAAATCAGGTGTCGATTTGGGATGATGCTTGGATCCCAAAGCTGCCCAGTGGTAGGCCACAAGGTATATTACGGCAGGCCGAGTACCCATCTACTGTGAATGAGCTTATTACTAGTCCTAACTCTTGGAATGAAGATAAGGTTCGTTCTACTTTTCTTCCTGAAGATGCTGAGGCCATTCTCTCAATCCCATTAAGTAATAGACAGCATGAGGATCGTTTAACTTGGCAATTGGAGAAGCGAGGTATGTTCACTGTTAAATCCGCTTATCGTTATGCTTTTTCTCGAATAGCATCGGTTTTATCTCCTGCAGTGGTGGCTAATCAGAGAGTTTGGAAAAAGATATGGTATGCCAAAATGCCAAGTTCAGCTAAAGTAAATGCTTGGAAGATCTGTCAGAATATTTTGCCTACCATGGATCGTTTAGCCTCTAAAAATGTTGTCTTGGAATCTCCAAAGTGTGTGCTGTGCAATGCTAAACCGGAAACAATTATTCATTTATGCCGAAATTGCCCGTTTTCTAGGGTTGTCCTTAGTACTCAAGATGCCATAAGGAGGGGTTGTTTTGACGTTGACACTGATCAGACGGATGCATTGAGTTGGATACATTATAGCTCTGAGAAGCTCTCATTAAATGTATTTGCTCAGTTTCTATTTTTTCTGTGGGGTATATGGAAGGAAAGAAATGTTCGAGTGTGGGAGAAGAGGGACACAGCGGCCAGTGATGTTGCATTACTCTCTTCTACTCGGTTGAGTAGTTATCAGTTCCACAATTCTAAGTTGAACTGTGGCATTACTACAGGTAGGGTTCTTCGATGGCAGCCTCCTCCTATAGGTTGGTTGAAGTTGAATTTTGATGGGGCTTACCATGGAGATGATGGTAGGGCAGCGATAGGCTTTCTGGTACGGGACTCGAACGGTTCTTTTATTCAAGCTATGGGGAAGCCAGTGGCTCAGGTGCAATCTGCTGAACATGTTGAACTCTTGGCGTGTAAGGCAGCTGTGGCATTTGTTTTGGAGAATAGGCTGCAGCCTATCATATTTGAGACGGACTGTCTGGCCTTGAAGCAAAATCTGATGCAGGGGGTCCATAACTCATCTCTGCTTGGAAGGATCTATGATGATCTTACTGAAGATATGGAGCTTATTCCTAGTATGCGGATGATGCATGTGCGTAGGGAAGCTAACTCGGTGGCCCACCTTTTGGCAACTCATGCGATTGTTTCTGGACAGGATTTCTTTTTTTTTTTTCTACTGTTCCCTCTTTTATTCAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

477

Amino Acids

54.42

Weight (kDa)

9.18

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	135 - 226	8.8e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	335 - 457	3.2e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57320 AT3G57320
fragaria_vesca	FvH4_6g24490 FvH4_6g24490 FvH4_6g24490 FvH4_6g24490
malus_domestica	MD12G1082300.v1.1 MD15G1429100.v1.1
prunus_persica	Prupe.7G053700_v2.0.a1
pyrus_communis	pycom12g06810
rosa_chinensis	RchiOBHm_Chr3g0483531 RchiOBHm_Chr3g0483541 RchiOBHm_Chr3g0483561
rosa_laevigata	RLG00000023267
rosa_multiflora	Rmu_sc0000555.1_g000025
rosa_roxburghii	Rroxscaffold_1G00036690 Rroxscaffold_3G00271510 Rroxscaffold_4G00313570 Rroxscaffold_6G00398230
rosa_rugosa	Rorug03G0206800 Rorug03G0206900
rosa_samantha	Rh3AG254900 Rh3AG255000 Rh3AG255100 Rh3BG292200 Rh3BG292300 Rh3BG292400 Rh3CG289700 Rh3CG289800 Rh3DG285600 Rh3DG285700 Rh3DG285800
rosa_wichuraiana	Rw0G005380 Rw3G023050 Rw3G023060 Rw7G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1357
AccII	CGCG	2 cut(s)	31, 112
AciI	CCGC	4 cut(s)	112, 417, 869, 1312
AclWI	GGATC	5 cut(s)	181, 194, 375, 579, 1274
AcoI	YGGCCR	1 cut(s)	870
AcsI	RAATTY	1 cut(s)	1003
AcuI	CTGAAG	2 cut(s)	336, 1305
AfaI	GTAC	3 cut(s)	239, 691, 1059
AfiI	CCNNNNNNNGG	5 cut(s)	90, 207, 708, 986, 1357
AflIII	ACRYGT	2 cut(s)	1126, 1428
AgsI	TTSAA	7 cut(s)	937, 997, 1003, 1085, 1133, 1219, 1426
AhdI	GACNNNNNGTC	1 cut(s)	1206
AhlI	ACTAGT	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	1193
AlwI	GGATC	5 cut(s)	181, 194, 375, 579, 1274
AoxI	GGCC	6 cut(s)	209, 231, 327, 870, 1212, 1347
ApeKI	GCWGC	6 cut(s)	196, 973, 1040, 1151, 1180, 1183
ApoI	RAATTY	1 cut(s)	1003
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	31, 33
AspS9I	GGNCC	2 cut(s)	1240, 1348
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	1240
BamHI	GGATCC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	6 cut(s)	183, 985, 1052, 1163, 1167, 1195
BccI	CCATC	5 cut(s)	146, 250, 963, 1004, 1025
BceAI	ACGGC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciVI	GTATCC	1 cut(s)	750
BclI	TGATCA	1 cut(s)	733
BcoDI	GTCTC	1 cut(s)	1193
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	3 cut(s)	267, 675, 1305
BfmI	CTRYAG	5 cut(s)	63, 462, 951, 984, 1181
BfuI	GTATCC	1 cut(s)	750
BglII	AGATCT	1 cut(s)	543
BisI	GCNGC	7 cut(s)	197, 870, 974, 1041, 1152, 1181, 1184
BlsI	GCNGC	7 cut(s)	198, 871, 975, 1042, 1153, 1182, 1185
BmcAI	AGTACT	1 cut(s)	691
Bme18I	GGWCC	1 cut(s)	1240
BmeRI	GACNNNNNGTC	1 cut(s)	1206
BmgT120I	GGNCC	2 cut(s)	1240, 1348
BmiI	GGNNCC	3 cut(s)	133, 188, 1241
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	7 cut(s)	169, 310, 455, 688, 733, 1221, 1308
BmuI	ACTGGG	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
Bpu10I	CCTNAGC	2 cut(s)	324, 1107
BpuEI	CTTGAG	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	567, 1021
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 207, 708, 986, 1357
Bse1I	ACTGG	3 cut(s)	201, 873, 1100
Bse3DI	GCAATG	1 cut(s)	631
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	567, 1021
BseGI	GGATG	3 cut(s)	181, 748, 1320
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	5 cut(s)	90, 207, 708, 986, 1357
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	4 cut(s)	315, 762, 812, 1121
BseNI	ACTGG	3 cut(s)	201, 873, 1100
BsePI	GCGCGC	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	969
BseXI	GCAGC	6 cut(s)	183, 985, 1052, 1163, 1167, 1195
Bsh1236I	CGCG	2 cut(s)	31, 112
BshFI	GGCC	6 cut(s)	211, 233, 329, 872, 1214, 1349
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	875, 1076
BslI	CCNNNNNNNGG	5 cut(s)	90, 207, 708, 986, 1357
BsmAI	GTCTC	1 cut(s)	1193
BsmBI	CGTCTC	1 cut(s)	1193
BsmFI	GGGAC	2 cut(s)	875, 1076
BsnI	GGCC	6 cut(s)	211, 233, 329, 872, 1214, 1349
Bsp143I	GATC	7 cut(s)	186, 367, 543, 571, 733, 1266, 1276
Bsp19I	CCATGG	2 cut(s)	567, 1021
BspACI	CCGC	4 cut(s)	112, 417, 869, 1312
BspANI	GGCC	6 cut(s)	211, 233, 329, 872, 1214, 1349
BspCNI	CTCAG	4 cut(s)	316, 763, 811, 1120
BspFNI	CGCG	2 cut(s)	31, 112
BspLI	GGNNCC	3 cut(s)	133, 188, 1241
BspMAI	CTGCAG	2 cut(s)	466, 1185
BspPI	GGATC	5 cut(s)	181, 194, 375, 579, 1274
BsrDI	GCAATG	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	201, 873, 1100
BssECI	CCNNGG	2 cut(s)	567, 1021
BssHII	GCGCGC	1 cut(s)	29
BssMI	GATC	7 cut(s)	186, 367, 543, 571, 733, 1266, 1276
BssT1I	CCWWGG	2 cut(s)	567, 1021
Bst4CI	ACNGT	7 cut(s)	18, 250, 409, 941, 1073, 1208, 1410
Bst6I	CTCTTC	2 cut(s)	851, 898
BstAPI	GCANNNNNTGC	1 cut(s)	1367
BstC8I	GCNNGC	2 cut(s)	31, 231
BstDEI	CTNAG	6 cut(s)	324, 686, 771, 798, 930, 1107
BstDSI	CCRYGG	2 cut(s)	567, 1021
BstENI	CCTNNNNNAGG	1 cut(s)	984
BstF5I	GGATG	3 cut(s)	181, 748, 1320
BstFNI	CGCG	2 cut(s)	31, 112
BstHHI	GCGC	2 cut(s)	31, 33
BstKTI	GATC	7 cut(s)	189, 370, 546, 574, 736, 1269, 1279
BstMAI	GTCTC	1 cut(s)	1193
BstMBI	GATC	7 cut(s)	186, 367, 543, 571, 733, 1266, 1276
BstMWI	GCNNNNNNNGC	6 cut(s)	470, 663, 1148, 1157, 1318, 1367
BstNSI	RCATGY	3 cut(s)	1130, 1325, 1432
BstSFI	CTRYAG	5 cut(s)	63, 462, 951, 984, 1181
BstUI	CGCG	2 cut(s)	31, 112
BstV1I	GCAGC	6 cut(s)	183, 985, 1052, 1163, 1167, 1195
BstX2I	RGATCY	3 cut(s)	186, 543, 1266
BstYI	RGATCY	3 cut(s)	186, 543, 1266
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	6 cut(s)	211, 233, 329, 872, 1214, 1349
BtgI	CCRYGG	2 cut(s)	567, 1021
BtsCI	GGATG	3 cut(s)	181, 748, 1320
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	6 cut(s)	208, 405, 471, 729, 880, 1107
Cac8I	GCNNGC	2 cut(s)	31, 231
CfoI	GCGC	2 cut(s)	31, 33
Cfr13I	GGNCC	2 cut(s)	1240, 1348
Csp6I	GTAC	3 cut(s)	238, 690, 1058
CviAII	CATG	9 cut(s)	71, 90, 362, 568, 1022, 1127, 1322, 1367, 1429
CviQI	GTAC	3 cut(s)	238, 690, 1058
DdeI	CTNAG	6 cut(s)	324, 686, 771, 798, 930, 1107
DpnI	GATC	7 cut(s)	188, 369, 545, 573, 735, 1268, 1278
DpnII	GATC	7 cut(s)	186, 367, 543, 571, 733, 1266, 1276
DriI	GACNNNNNGTC	1 cut(s)	1206
EaeI	YGGCCR	1 cut(s)	870
Eam1104I	CTCTTC	2 cut(s)	851, 898
Eam1105I	GACNNNNNGTC	1 cut(s)	1206
EarI	CTCTTC	2 cut(s)	851, 898
Eco130I	CCWWGG	2 cut(s)	567, 1021
Eco47I	GGWCC	1 cut(s)	1240
Eco57I	CTGAAG	2 cut(s)	336, 1305
EcoNI	CCTNNNNNAGG	1 cut(s)	984
EcoT14I	CCWWGG	2 cut(s)	567, 1021
EcoT22I	ATGCAT	2 cut(s)	748, 1323
ErhI	CCWWGG	2 cut(s)	567, 1021
Esp3I	CGTCTC	1 cut(s)	1193
FaeI	CATG	9 cut(s)	74, 93, 365, 571, 1025, 1130, 1325, 1370, 1432
FaqI	GGGAC	2 cut(s)	875, 1076
FatI	CATG	9 cut(s)	70, 89, 361, 567, 1021, 1126, 1321, 1366, 1428
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	7 cut(s)	197, 870, 974, 1041, 1152, 1181, 1184
FokI	GGATG	3 cut(s)	188, 755, 1327
Fsp4HI	GCNGC	7 cut(s)	197, 870, 974, 1041, 1152, 1181, 1184
FspBI	CTAG	3 cut(s)	267, 675, 1305
GlaI	GCGC	2 cut(s)	30, 32
GluI	GCNGC	7 cut(s)	197, 870, 974, 1041, 1152, 1181, 1184
HaeIII	GGCC	6 cut(s)	211, 233, 329, 872, 1214, 1349
HapII	CCGG	1 cut(s)	635
HhaI	GCGC	2 cut(s)	31, 33
Hin1II	CATG	9 cut(s)	74, 93, 365, 571, 1025, 1130, 1325, 1370, 1432
Hin6I	GCGC	2 cut(s)	29, 31
HinP1I	GCGC	2 cut(s)	29, 31
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	2 cut(s)	602, 1064
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	405, 727
Hpy188I	TCNGA	6 cut(s)	125, 480, 552, 738, 772, 1230
Hpy188III	TCNNGA	6 cut(s)	55, 139, 314, 438, 695, 1380
Hpy8I	GTNNAC	2 cut(s)	405, 727
HpyAV	CCTTC	4 cut(s)	90, 145, 823, 1257
HpyCH4III	ACNGT	7 cut(s)	18, 250, 409, 941, 1073, 1208, 1410
HpyCH4IV	ACGT	1 cut(s)	723
HpyCH4V	TGCA	9 cut(s)	107, 464, 624, 746, 884, 1114, 1183, 1234, 1321
HpyF10VI	GCNNNNNNNGC	6 cut(s)	470, 663, 1148, 1157, 1318, 1367
HpyF3I	CTNAG	6 cut(s)	324, 686, 771, 798, 930, 1107
HpySE526I	ACGT	1 cut(s)	723
Hsp92II	CATG	9 cut(s)	74, 93, 365, 571, 1025, 1130, 1325, 1370, 1432
HspAI	GCGC	2 cut(s)	29, 31
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	7 cut(s)	186, 367, 543, 571, 733, 1266, 1276
LmnI	GCTCC	1 cut(s)	1294
Lsp1109I	GCAGC	6 cut(s)	183, 985, 1052, 1163, 1167, 1195
LweI	GCATC	7 cut(s)	169, 310, 455, 688, 733, 1221, 1308
MaeI	CTAG	3 cut(s)	267, 675, 1305
MaeII	ACGT	1 cut(s)	723
MalI	GATC	7 cut(s)	188, 369, 545, 573, 735, 1268, 1278
MboI	GATC	7 cut(s)	186, 367, 543, 571, 733, 1266, 1276
MboII	GAAGA	9 cut(s)	154, 299, 302, 329, 553, 868, 885, 956, 1298
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	3 cut(s)	186, 543, 1266
MluCI	AATT	6 cut(s)	49, 383, 642, 661, 925, 1003
MlyI	GAGTC	1 cut(s)	1058
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	9 cut(s)	319, 358, 389, 592, 702, 852, 987, 990, 1425
Mph1103I	ATGCAT	2 cut(s)	748, 1323
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	4 cut(s)	347, 374, 411, 785
MslI	CAYNNNNRTG	1 cut(s)	1026
MspA1I	CMGCKG	2 cut(s)	869, 1154
MspI	CCGG	1 cut(s)	635
MunI	CAATTG	1 cut(s)	383
MvnI	CGCG	2 cut(s)	31, 112
MwoI	GCNNNNNNNGC	6 cut(s)	470, 663, 1148, 1157, 1318, 1367
NcoI	CCATGG	2 cut(s)	567, 1021
NdeII	GATC	7 cut(s)	186, 367, 543, 571, 733, 1266, 1276
NlaIII	CATG	9 cut(s)	74, 93, 365, 571, 1025, 1130, 1325, 1370, 1432
NlaIV	GGNNCC	3 cut(s)	133, 188, 1241
NmeAIII	GCCGAG	1 cut(s)	259
NsiI	ATGCAT	2 cut(s)	748, 1323
NspI	RCATGY	3 cut(s)	1130, 1325, 1432
PauI	GCGCGC	1 cut(s)	29
PciI	ACATGT	2 cut(s)	1126, 1428
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	1357
PkrI	GCNGC	7 cut(s)	198, 871, 975, 1042, 1153, 1182, 1185
PleI	GAGTC	1 cut(s)	1058
PpsI	GAGTC	1 cut(s)	1058
PscI	ACATGT	2 cut(s)	1126, 1428
PspN4I	GGNNCC	3 cut(s)	133, 188, 1241
PspPI	GGNCC	2 cut(s)	1240, 1348
PstI	CTGCAG	2 cut(s)	466, 1185
PsuI	RGATCY	3 cut(s)	186, 543, 1266
PteI	GCGCGC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	3 cut(s)	239, 691, 1059
RsaNI	GTAC	3 cut(s)	238, 690, 1058
RseI	CAYNNNNRTG	1 cut(s)	1026
SaqAI	TTAA	4 cut(s)	347, 374, 411, 785
SatI	GCNGC	7 cut(s)	197, 870, 974, 1041, 1152, 1181, 1184
Sau3AI	GATC	7 cut(s)	186, 367, 543, 571, 733, 1266, 1276
Sau96I	GGNCC	2 cut(s)	1240, 1348
ScaI	AGTACT	1 cut(s)	691
SchI	GAGTC	1 cut(s)	1058
SfaNI	GCATC	7 cut(s)	169, 310, 455, 688, 733, 1221, 1308
SfcI	CTRYAG	5 cut(s)	63, 462, 951, 984, 1181
SinI	GGWCC	1 cut(s)	1240
SmiMI	CAYNNNNRTG	1 cut(s)	1026
SmlI	CTYRAG	1 cut(s)	693
SmoI	CTYRAG	1 cut(s)	693
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	6 cut(s)	49, 383, 642, 661, 925, 1003
SsiI	CCGC	4 cut(s)	112, 417, 869, 1312
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	3 cut(s)	267, 675, 1305
StyI	CCWWGG	2 cut(s)	567, 1021
TaaI	ACNGT	7 cut(s)	18, 250, 409, 941, 1073, 1208, 1410
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	5 cut(s)	167, 439, 844, 967, 1067
TasI	AATT	6 cut(s)	49, 383, 642, 661, 925, 1003
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	1 cut(s)	872
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	4 cut(s)	347, 374, 411, 785
Tru9I	TTAA	4 cut(s)	347, 374, 411, 785
TscAI	CASTG	6 cut(s)	208, 412, 471, 736, 880, 1107
TseI	GCWGC	6 cut(s)	196, 973, 1040, 1151, 1180, 1183
TspDTI	ATGAA	2 cut(s)	300, 638
TspGWI	ACGGA	2 cut(s)	755, 1217
TspRI	CASTG	6 cut(s)	208, 412, 471, 736, 880, 1107
Van91I	CCANNNNNTGG	1 cut(s)	1357
VpaK11BI	GGWCC	1 cut(s)	1240
XagI	CCTNNNNNAGG	1 cut(s)	984
XapI	RAATTY	1 cut(s)	1003
XceI	RCATGY	3 cut(s)	1130, 1325, 1432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1028
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	3 cut(s)	267, 675, 1305
ZrmI	AGTACT	1 cut(s)	691
Zsp2I	ATGCAT	2 cut(s)	748, 1323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.