AT3G62030

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005159
Physical Location & Seq
Forward (+)
22973004 .. 22975378
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62030.2

Sequence Viewer

Length: 783 bp
ATGGCTTCTTCGTCTTCTATGCAGATGGTTCACACTTCCCGCTCCATTGCCCAGATTGGGTTCGGTGTTAAGTCGCAATTAGTTTCTGCAAATCGAACAACTCAATCAGTTTGCTTTGGAGCTCGTTCCTCTGGAATTGCATTATCTTCGAGATTGCACTATGCATCACCCATTAAGCAATTTTCTGGGGTTTATGCGACCACCAAGCATCAGAGAACCGCTTGTGTTAAATCCATGGCTGCTGAGGAAGAAGAAGTAATCGAACCTCAAGCTAAAGTGACAAACAAGGTTTACTTTGATGTGGAAATTGGAGGTGAAGTTGCTGGCAGAATTGTGATGGGTCTCTTTGGAGAAGTTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGTGAGAAGAAATACGGGTACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCAAGGAGGTGATTTCACCGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAAGTTCGAAGATGAAAACTTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAACGCTGGTCCTAATACTAATGGAAGCCAGTTTTTCATTTGTACCGTCAAGACTTCATGGTTAGATAACAAGCATGTCGTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGACTCTTGAGTCTCAAGAGACTCGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTAGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

260

Amino Acids

28.21

Weight (kDa)

8.83

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 151 - 307 7.2e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 700
AccB1I GGYRCC 1 cut(s) 512
AccBSI CCGCTC 1 cut(s) 42
AccII CGCG 1 cut(s) 717
AciI CCGC 3 cut(s) 40, 219, 759
AclWI GGATC 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 563
AfaI GTAC 4 cut(s) 394, 416, 490, 619
AfiI CCNNNNNNNGG 2 cut(s) 57, 737
AgsI TTSAA 2 cut(s) 374, 674
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 4 cut(s) 122, 272, 685, 766
AluI AGCT 4 cut(s) 122, 272, 685, 766
Alw21I GWGCWC 2 cut(s) 124, 768
Alw26I GTCTC 3 cut(s) 347, 704, 708
AlwI GGATC 1 cut(s) 451
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 719
AspS9I GGNCC 2 cut(s) 554, 584
AsuHPI GGTGA 6 cut(s) 159, 326, 410, 466, 479, 529
AsuII TTCGAA 1 cut(s) 522
AvaII GGWCC 2 cut(s) 554, 584
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 2 cut(s) 124, 768
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 2 cut(s) 124, 768
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 226
BccI CCATC 3 cut(s) 19, 331, 441
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 1 cut(s) 558
BcoDI GTCTC 3 cut(s) 347, 704, 708
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 2 cut(s) 554, 584
BmgT120I GGNCC 2 cut(s) 554, 584
BmiI GGNNCC 2 cut(s) 424, 514
BmrFI CCNGG 1 cut(s) 558
BmsI GCATC 3 cut(s) 173, 217, 766
BpiI GAAGAC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 522
BpuEI CTTGAG 4 cut(s) 252, 586, 690, 719
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 234, 460, 477
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 342, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 737
Bse1I ACTGG 4 cut(s) 400, 496, 556, 604
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 3 cut(s) 234, 460, 477
BseLI CCNNNNNNNGG 2 cut(s) 57, 737
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 4 cut(s) 400, 496, 556, 604
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 717
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 2 cut(s) 124, 768
BslI CCNNNNNNNGG 2 cut(s) 57, 737
BsmAI GTCTC 3 cut(s) 347, 704, 708
Bso31I GGTCTC 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 124, 768
Bsp143I GATC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 40, 219, 759
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 1 cut(s) 717
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 424, 514
BspPI GGATC 1 cut(s) 451
BspT104I TTCGAA 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 4 cut(s) 400, 496, 556, 604
BssECI CCNNGG 3 cut(s) 234, 460, 477
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 2 cut(s) 234, 460
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 3 cut(s) 370, 512, 622
BstBI TTCGAA 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 325, 757
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 234
BstFNI CGCG 1 cut(s) 717
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 3 cut(s) 347, 704, 708
BstMBI GATC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 556
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 325, 757
CciI TCATGA 1 cut(s) 453
CfoI GCGC 1 cut(s) 719
Cfr13I GGNCC 2 cut(s) 554, 584
Csp6I GTAC 4 cut(s) 393, 415, 489, 618
CviAII CATG 5 cut(s) 235, 454, 571, 633, 650
CviJI RGCY 7 cut(s) 5, 122, 239, 272, 603, 685, 766
CviKI_1 RGCY 7 cut(s) 5, 122, 239, 272, 603, 685, 766
CviQI GTAC 4 cut(s) 393, 415, 489, 618
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
DrdI GACNNNNNNGTC 1 cut(s) 700
DseDI GACNNNNNNGTC 1 cut(s) 700
Ecl136II GAGCTC 2 cut(s) 122, 766
Eco130I CCWWGG 2 cut(s) 234, 460
Eco24I GRGCYC 2 cut(s) 124, 768
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 554, 584
Eco53kI GAGCTC 2 cut(s) 122, 766
Eco57I CTGAAG 1 cut(s) 563
EcoICRI GAGCTC 2 cut(s) 122, 766
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 2 cut(s) 234, 460
EcoT22I ATGCAT 1 cut(s) 166
EcoT38I GRGCYC 2 cut(s) 124, 768
ErhI CCWWGG 2 cut(s) 234, 460
FaeI CATG 5 cut(s) 238, 457, 574, 636, 653
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 5 cut(s) 234, 453, 570, 632, 649
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 1 cut(s) 240
FriOI GRGCYC 2 cut(s) 124, 768
Fsp4HI GCNGC 1 cut(s) 240
GlaI GCGC 1 cut(s) 718
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 513
HhaI GCGC 1 cut(s) 719
Hin1II CATG 5 cut(s) 238, 457, 574, 636, 653
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 5 cut(s) 561, 694, 701, 712, 747
HphI GGTGA 6 cut(s) 159, 326, 410, 466, 479, 529
Hpy166II GTNNAC 3 cut(s) 31, 292, 393
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 7 cut(s) 132, 150, 454, 565, 625, 698, 707
Hpy8I GTNNAC 3 cut(s) 31, 292, 393
HpyAV CCTTC 1 cut(s) 668
HpyCH4III ACNGT 3 cut(s) 370, 512, 622
HpyCH4V TGCA 5 cut(s) 22, 89, 140, 157, 164
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 5 cut(s) 238, 457, 574, 636, 653
HspAI GCGC 1 cut(s) 717
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 3 cut(s) 47, 119, 771
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 3 cut(s) 173, 217, 766
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 458
MbiI CCGCTC 1 cut(s) 42
MboI GATC 1 cut(s) 456
MboII GAAGA 6 cut(s) 6, 138, 260, 263, 415, 536
MhlI GDGCHC 2 cut(s) 124, 768
MluCI AATT 6 cut(s) 77, 135, 179, 306, 330, 669
MlyI GAGTC 3 cut(s) 688, 706, 710
MnlI CCTC 8 cut(s) 139, 238, 276, 305, 436, 458, 472, 488
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 4 cut(s) 69, 174, 228, 444
MspR9I CCNGG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 717
NcoI CCATGG 1 cut(s) 234
NdeII GATC 1 cut(s) 456
NlaIII CATG 5 cut(s) 238, 457, 574, 636, 653
NlaIV GGNNCC 2 cut(s) 424, 514
NmuCI GTSAC 1 cut(s) 277
NsiI ATGCAT 1 cut(s) 166
NspI RCATGY 1 cut(s) 653
NspV TTCGAA 1 cut(s) 522
PagI TCATGA 1 cut(s) 453
PfeI GAWTC 2 cut(s) 561, 747
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 3 cut(s) 688, 706, 709
PpsI GAGTC 3 cut(s) 688, 706, 709
Psp124BI GAGCTC 2 cut(s) 124, 768
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 2 cut(s) 424, 514
PspPI GGNCC 2 cut(s) 554, 584
RsaI GTAC 4 cut(s) 394, 416, 490, 619
RsaNI GTAC 4 cut(s) 393, 415, 489, 618
SacI GAGCTC 2 cut(s) 124, 768
SaqAI TTAA 4 cut(s) 69, 174, 228, 444
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 2 cut(s) 554, 584
SchI GAGTC 3 cut(s) 688, 706, 710
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 2 cut(s) 124, 768
SfaNI GCATC 3 cut(s) 173, 217, 766
SfuI TTCGAA 1 cut(s) 522
SinI GGWCC 2 cut(s) 554, 584
SmlI CTYRAG 4 cut(s) 267, 565, 698, 705
SmoI CTYRAG 4 cut(s) 267, 565, 698, 705
Sse9I AATT 6 cut(s) 77, 135, 179, 306, 330, 669
SsiI CCGC 3 cut(s) 40, 219, 759
SstI GAGCTC 2 cut(s) 124, 768
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 2 cut(s) 234, 460
TaaI ACNGT 3 cut(s) 370, 512, 622
TaqI TCGA 5 cut(s) 94, 149, 261, 522, 723
TasI AATT 6 cut(s) 77, 135, 179, 306, 330, 669
TatI WGTACW 1 cut(s) 392
TfiI GAWTC 2 cut(s) 561, 747
Tru1I TTAA 4 cut(s) 69, 174, 228, 444
Tru9I TTAA 4 cut(s) 69, 174, 228, 444
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 5 cut(s) 442, 543, 601, 621, 695
TspGWI ACGGA 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 554, 584
XceI RCATGY 1 cut(s) 653
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.