FvH4_1g26090

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005159
Physical Location & Seq
Forward (+)
17971768 .. 17974041
2274 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26090.t1

Sequence Viewer

Length: 723 bp
ATGGCGTCTGTTGCTGCGTGTTCAATGTCGGTGCAATTTCTCCAGACCCAAAGGACCAATCTTGTTCCTTGTGCTCGTGTCAGTTCCAAAGCTTTCTTTGGTCGGAGGTTGCCGACTAGTTTATTATGCAAACGTGCATCGTTTACTGTGAAGCCGAAAACAATGGTGTGCGTCAACTCTACCGCAAATGAGTTAGAGGAGAAGCTGCAAGCTAAAGTGACGACCCGGTGCTTTTTTGATATAGACATTGGCGGTGAAGCTGTAGGTCGGGTTGTGATTGGCCTTTTTGGTGAGGTTGTTCCTAAAACCGTCGAGAATTTTCGAGCGCTGTGCACAGGGGAGAAAGGATATGGTTATAAAGGATGCTCTTTCCACCGCATCATTAAGGATTTTATGATTCAAGGAGGGGATTTCACTGAAGGAGATGGAACCGGAGGGATCAGTATCTATGGTTCCAAATTTGAAGATGAGAACTTTGCTTTGAAGCATGTCGGGCCTGGTGTAGTGAGCATGGCTAACGCAGGCCCTGGTACTAATGGGAGTCAATTTTTTATCTGCACAGTGAAGACTCCTTGGTTGGATGATCGTCACGTTGTGTTCGGACACATTATTGAGGGAATGAATGTTGTGCGGAAACTCGAATCCCAAGAGACAAGTAGGTCAGATGTGCCTCGCTTGCCCTGCAGAATTGTAAACTGTGGAGAGTTGCTTATGGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

241

Amino Acids

26.14

Weight (kDa)

8.52

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 79 - 234 3.3e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AasI GACNNNNNNGTC 1 cut(s) 658
AciI CCGC 4 cut(s) 183, 252, 376, 631
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 2 cut(s) 316, 458
AcuI CTGAAG 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 595
AfaI GTAC 1 cut(s) 532
AfeI AGCGCT 1 cut(s) 327
AgsI TTSAA 4 cut(s) 24, 401, 464, 484
AhlI ACTAGT 1 cut(s) 116
AjnI CCWGG 2 cut(s) 496, 526
AluBI AGCT 4 cut(s) 92, 205, 212, 260
AluI AGCT 4 cut(s) 92, 205, 212, 260
Alw21I GWGCWC 2 cut(s) 76, 335
Alw26I GTCTC 1 cut(s) 644
Alw44I GTGCAC 1 cut(s) 331
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 527
Aor51HI AGCGCT 1 cut(s) 327
AoxI GGCC 3 cut(s) 280, 494, 523
ApaLI GTGCAC 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 14, 205
ApoI RAATTY 2 cut(s) 316, 458
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 3 cut(s) 54, 494, 524
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 266, 302
AvaII GGWCC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 335
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 2 cut(s) 76, 335
BbvI GCAGC 1 cut(s) 192
BccI CCATC 2 cut(s) 419, 710
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 2 cut(s) 498, 528
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 644
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 2 cut(s) 261, 682
BfoI RGCGCY 1 cut(s) 329
BisI GCNGC 2 cut(s) 15, 206
BlsI GCNGC 2 cut(s) 16, 207
Bme1390I CCNGG 3 cut(s) 226, 498, 528
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 3 cut(s) 54, 494, 524
BmiI GGNNCC 2 cut(s) 430, 454
BmrFI CCNGG 3 cut(s) 226, 498, 528
BmsI GCATC 3 cut(s) 146, 353, 387
BpiI GAAGAC 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 526, 572
BsaWI WCCGGW 1 cut(s) 431
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 2 cut(s) 498, 528
BseDI CCNNGG 2 cut(s) 526, 572
BseGI GGATG 3 cut(s) 368, 586, 721
BseJI GATNNNNATC 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 541
BshFI GGCC 3 cut(s) 282, 496, 525
BsiHKAI GWGCWC 2 cut(s) 76, 335
BsiSI CCGG 2 cut(s) 226, 432
BsmAI GTCTC 1 cut(s) 644
BsnI GGCC 3 cut(s) 282, 496, 525
Bsp1286I GDGCHC 2 cut(s) 76, 335
Bsp143I GATC 2 cut(s) 438, 583
BspACI CCGC 4 cut(s) 183, 252, 376, 631
BspANI GGCC 3 cut(s) 282, 496, 525
BspLI GGNNCC 2 cut(s) 430, 454
BspMAI CTGCAG 1 cut(s) 686
BspPI GGATC 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 526, 572
BssMI GATC 2 cut(s) 438, 583
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 572
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 498, 528
Bst4CI ACNGT 4 cut(s) 148, 310, 562, 698
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 210, 523, 677
BstF5I GGATG 3 cut(s) 368, 586, 721
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 441, 586
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 2 cut(s) 438, 583
BstMWI GCNNNNNNNGC 4 cut(s) 11, 493, 676, 681
BstNI CCWGG 2 cut(s) 498, 528
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 3 cut(s) 224, 496, 526
BstSFI CTRYAG 2 cut(s) 261, 682
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 572
BsuRI GGCC 3 cut(s) 282, 496, 525
BtsCI GGATG 3 cut(s) 368, 586, 721
BtsIMutI CAGTG 2 cut(s) 414, 567
Cac8I GCNNGC 3 cut(s) 210, 523, 677
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 3 cut(s) 54, 494, 524
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 531
CviAII CATG 2 cut(s) 488, 511
CviJI RGCY 9 cut(s) 92, 154, 205, 212, 260, 282, 496, 515, 525
CviKI_1 RGCY 9 cut(s) 92, 154, 205, 212, 260, 282, 496, 515, 525
CviQI GTAC 1 cut(s) 531
DpnI GATC 2 cut(s) 440, 585
DpnII GATC 2 cut(s) 438, 583
DraIII CACNNNGTG 1 cut(s) 595
DrdI GACNNNNNNGTC 1 cut(s) 658
DseDI GACNNNNNNGTC 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 438
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 496, 526
EcoT14I CCWWGG 1 cut(s) 572
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 2 cut(s) 491, 514
FaiI YATR 9 cut(s) 127, 242, 351, 357, 395, 450, 489, 512, 713
FatI CATG 2 cut(s) 487, 510
Fnu4HI GCNGC 2 cut(s) 15, 206
FokI GGATG 2 cut(s) 375, 593
Fsp4HI GCNGC 2 cut(s) 15, 206
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 327
GluI GCNGC 2 cut(s) 15, 206
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 3 cut(s) 282, 496, 525
HapII CCGG 2 cut(s) 226, 432
HgaI GACGC 1 cut(s) 160
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 491, 514
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 4 cut(s) 397, 541, 568, 641
HpaII CCGG 2 cut(s) 226, 432
HphI GGTGA 2 cut(s) 266, 302
Hpy166II GTNNAC 4 cut(s) 144, 175, 333, 694
Hpy188I TCNGA 3 cut(s) 105, 602, 664
Hpy188III TCNNGA 2 cut(s) 43, 313
Hpy8I GTNNAC 4 cut(s) 144, 175, 333, 694
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 413
HpyCH4III ACNGT 4 cut(s) 148, 310, 562, 698
HpyCH4IV ACGT 2 cut(s) 133, 591
HpyCH4V TGCA 7 cut(s) 34, 129, 137, 208, 333, 558, 684
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 493, 676, 681
HpySE526I ACGT 2 cut(s) 133, 591
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 491, 514
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 2 cut(s) 438, 583
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 3 cut(s) 146, 353, 387
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 133, 591
MaeIII GTNAC 2 cut(s) 217, 587
MalI GATC 2 cut(s) 440, 585
MboI GATC 2 cut(s) 438, 583
MboII GAAGA 2 cut(s) 476, 577
MhlI GDGCHC 2 cut(s) 76, 335
MluCI AATT 5 cut(s) 35, 316, 458, 545, 687
MlyI GAGTC 2 cut(s) 550, 562
MmeI TCCRAC 2 cut(s) 83, 558
MnlI CCTC 7 cut(s) 99, 190, 286, 398, 428, 607, 681
MseI TTAA 1 cut(s) 384
MspI CCGG 2 cut(s) 226, 432
MspR9I CCNGG 3 cut(s) 226, 498, 528
MvaI CCWGG 2 cut(s) 498, 528
MwoI GCNNNNNNNGC 4 cut(s) 11, 493, 676, 681
NciI CCSGG 1 cut(s) 226
NdeII GATC 2 cut(s) 438, 583
NlaIII CATG 2 cut(s) 491, 514
NlaIV GGNNCC 2 cut(s) 430, 454
NmuCI GTSAC 2 cut(s) 217, 587
NspI RCATGY 1 cut(s) 491
PfeI GAWTC 2 cut(s) 397, 641
PkrI GCNGC 2 cut(s) 16, 207
PleI GAGTC 2 cut(s) 549, 562
PpsI GAGTC 2 cut(s) 549, 562
PsiI TTATAA 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 496, 526
PspGI CCWGG 2 cut(s) 496, 526
PspN4I GGNNCC 2 cut(s) 430, 454
PspPI GGNCC 3 cut(s) 54, 494, 524
PsrI GAACNNNNNNTAC 2 cut(s) 436, 468
PstI CTGCAG 1 cut(s) 686
PstNI CAGNNNCTG 1 cut(s) 527
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 15, 206
Sau3AI GATC 2 cut(s) 438, 583
Sau96I GGNCC 3 cut(s) 54, 494, 524
SchI GAGTC 2 cut(s) 550, 562
ScrFI CCNGG 3 cut(s) 226, 498, 528
SduI GDGCHC 2 cut(s) 76, 335
SfaNI GCATC 3 cut(s) 146, 353, 387
SfcI CTRYAG 2 cut(s) 261, 682
SinI GGWCC 1 cut(s) 54
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 5 cut(s) 35, 316, 458, 545, 687
SsiI CCGC 4 cut(s) 183, 252, 376, 631
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 3 cut(s) 224, 496, 526
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 4 cut(s) 148, 310, 562, 698
TaiI ACGT 2 cut(s) 136, 594
TaqI TCGA 3 cut(s) 312, 322, 639
TasI AATT 5 cut(s) 35, 316, 458, 545, 687
TfiI GAWTC 2 cut(s) 397, 641
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 421, 567
TseFI GTSAC 2 cut(s) 217, 587
TseI GCWGC 2 cut(s) 14, 205
Tsp45I GTSAC 2 cut(s) 217, 587
TspDTI ATGAA 1 cut(s) 635
TspRI CASTG 2 cut(s) 421, 567
VneI GTGCAC 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 2 cut(s) 316, 458
XceI RCATGY 1 cut(s) 491
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.