RchiOBHm_Chr2g0163561

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005159
Physical Location & Seq
Reverse (-)
78998878 .. 79000680
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53172

Sequence Viewer

Length: 450 bp
ATGAGGAGGAGGAGCAGCTGCAATCCAAAGTCACAACAAAGTTTTTTTTGTATAGACATTGGCGGTGAAGCTGTTGGTCGAGTTGTGATTGGTCTTTTTGGTGAGGTTGTTCCTAAAACAGTAGAGAATTTCCGAGCTCTGTGCACAGGAGAGAAAGGATATGGTTATAAAAGATGCTCGTTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACTGGAGGGATCAGTATCTATGGTTCCAAATTTGATGATGAGAGCTTTGCTTTGAAGCATGTTGGGCCTGGTGTATTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGTCAGTTTTTAATCGGCACAGTAAAGGAAAATGTGAAGACAAATCCTCAATTGCTGTATGAATCCAAGTTGTATAGGATCCTACAAGGAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

149

Amino Acids

16.14

Weight (kDa)

8.93

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 25 - 131 1.3e-29 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AciI CCGC 2 cut(s) 63, 187
AclWI GGATC 4 cut(s) 202, 257, 424, 437
AcsI RAATTY 2 cut(s) 127, 269
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 2 cut(s) 307, 337
AluBI AGCT 4 cut(s) 18, 71, 137, 285
AluI AGCT 4 cut(s) 18, 71, 137, 285
Alw21I GWGCWC 2 cut(s) 139, 146
Alw44I GTGCAC 1 cut(s) 142
AlwI GGATC 4 cut(s) 202, 257, 424, 437
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 2 cut(s) 305, 334
ApaLI GTGCAC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 15, 18
ApoI RAATTY 2 cut(s) 127, 269
AspS9I GGNCC 2 cut(s) 305, 335
AsuHPI GGTGA 2 cut(s) 77, 113
BaeGI GKGCMC 1 cut(s) 146
BamHI GGATCC 1 cut(s) 429
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 2 cut(s) 139, 146
BbvI GCAGC 2 cut(s) 5, 27
BccI CCATC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 2 cut(s) 309, 339
BisI GCNGC 2 cut(s) 16, 19
BlsI GCNGC 2 cut(s) 17, 20
Bme1390I CCNGG 2 cut(s) 309, 339
BmgT120I GGNCC 2 cut(s) 305, 335
BmiI GGNNCC 2 cut(s) 265, 431
BmrFI CCNGG 2 cut(s) 309, 339
BmsI GCATC 2 cut(s) 164, 198
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 211, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 2 cut(s) 309, 339
BseDI CCNNGG 2 cut(s) 211, 337
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 3 cut(s) 19, 22, 25
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 2 cut(s) 5, 27
BshFI GGCC 2 cut(s) 307, 336
BsiHKAI GWGCWC 2 cut(s) 139, 146
BslI CCNNNNNNNGG 1 cut(s) 217
BsnI GGCC 2 cut(s) 307, 336
Bsp1286I GDGCHC 2 cut(s) 139, 146
Bsp143I GATC 3 cut(s) 207, 249, 429
BspACI CCGC 2 cut(s) 63, 187
BspANI GGCC 2 cut(s) 307, 336
BspLI GGNNCC 2 cut(s) 265, 431
BspPI GGATC 4 cut(s) 202, 257, 424, 437
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 211, 337
BssMI GATC 3 cut(s) 207, 249, 429
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 309, 339
Bst4CI ACNGT 2 cut(s) 121, 373
BstC8I GCNNGC 1 cut(s) 334
BstKTI GATC 3 cut(s) 210, 252, 432
BstMBI GATC 3 cut(s) 207, 249, 429
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstNI CCWGG 2 cut(s) 309, 339
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 307, 337
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 5, 27
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 2 cut(s) 307, 336
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 305, 335
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 299, 322
CviJI RGCY 7 cut(s) 18, 71, 137, 285, 307, 326, 336
CviKI_1 RGCY 7 cut(s) 18, 71, 137, 285, 307, 326, 336
CviQI GTAC 1 cut(s) 342
DpnI GATC 3 cut(s) 209, 251, 431
DpnII GATC 3 cut(s) 207, 249, 429
Ecl136II GAGCTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 307, 337
EcoT14I CCWWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 2 cut(s) 302, 325
FaiI YATR 9 cut(s) 53, 162, 168, 206, 261, 300, 323, 411, 426
FatI CATG 2 cut(s) 298, 321
Fnu4HI GCNGC 2 cut(s) 16, 19
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 16, 19
GluI GCNGC 2 cut(s) 16, 19
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 307, 336
Hin1II CATG 2 cut(s) 302, 325
HinfI GANTC 2 cut(s) 352, 413
HphI GGTGA 2 cut(s) 77, 113
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 121, 373
HpyCH4V TGCA 3 cut(s) 21, 144, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
Hsp92II CATG 2 cut(s) 302, 325
Kzo9I GATC 3 cut(s) 207, 249, 429
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 7 cut(s) 132, 228, 294, 318, 321, 324, 351
Lsp1109I GCAGC 2 cut(s) 5, 27
LweI GCATC 2 cut(s) 164, 198
MaeIII GTNAC 1 cut(s) 30
MalI GATC 3 cut(s) 209, 251, 431
MboI GATC 3 cut(s) 207, 249, 429
MboII GAAGA 1 cut(s) 400
MfeI CAATTG 1 cut(s) 401
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 139, 146
MluCI AATT 3 cut(s) 127, 269, 401
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 6 cut(s) 3, 97, 209, 239, 408, 434
MseI TTAA 2 cut(s) 195, 362
MspA1I CMGCKG 1 cut(s) 18
MspR9I CCNGG 2 cut(s) 309, 339
MunI CAATTG 1 cut(s) 401
MvaI CCWGG 2 cut(s) 309, 339
MwoI GCNNNNNNNGC 1 cut(s) 304
NdeII GATC 3 cut(s) 207, 249, 429
NlaIII CATG 2 cut(s) 302, 325
NlaIV GGNNCC 2 cut(s) 265, 431
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 1 cut(s) 302
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 2 cut(s) 17, 20
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PsiI TTATAA 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 307, 337
PspGI CCWGG 2 cut(s) 307, 337
PspN4I GGNNCC 2 cut(s) 265, 431
PspPI GGNCC 2 cut(s) 305, 335
PsrI GAACNNNNNNTAC 2 cut(s) 247, 279
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 2 cut(s) 195, 362
SatI GCNGC 2 cut(s) 16, 19
Sau3AI GATC 3 cut(s) 207, 249, 429
Sau96I GGNCC 2 cut(s) 305, 335
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 309, 339
SduI GDGCHC 2 cut(s) 139, 146
SetI ASST 5 cut(s) 20, 73, 108, 139, 287
SfaNI GCATC 2 cut(s) 164, 198
Sse9I AATT 3 cut(s) 127, 269, 401
SsiI CCGC 2 cut(s) 63, 187
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 307, 337
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 121, 373
TaqI TCGA 1 cut(s) 79
TasI AATT 3 cut(s) 127, 269, 401
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 195, 362
Tru9I TTAA 2 cut(s) 195, 362
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 15, 18
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 1 cut(s) 232
VneI GTGCAC 1 cut(s) 142
XapI RAATTY 2 cut(s) 127, 269
XceI RCATGY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.