RchiOBHm_Chr3g0491891

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005159
Physical Location & Seq
Reverse (-)
38604260 .. 38607615
3356 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45479

Sequence Viewer

Length: 459 bp
ATGAGGAGGGAGGTAGAGGAGCAGCTGCAATCCAAAGTCACAACAAAGTGTTTTTTTGATATAGACATTGGCGGTGAAGCTGTTGGTCGAGTTGTGATTGGTCTTTTTGGTGAGGTTGTTCCTAAAACAGTAGAGAATTTCCGAGCTCTGTGCACAGGAGAGAAAGGATATGGTTATAAAAGATGCTCGTTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACTGGAGGGATTAGTATCTATGGTTCCAAATTTGATGATGAGAGCTTTGCTTTGAAGCATGTTGGGCCTGGTGTATTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGTCAGTTTTTAATCGGCACAGTAAAGGAAAATGTGAAGACAAATCCTCAATTGCTGTATGAATCCAAGTTGTATAGGATCCTACAAGGAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

152

Amino Acids

16.55

Weight (kDa)

6.73

Isoelectric Point (pI)

23.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 19 - 134 6.8e-30 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AciI CCGC 2 cut(s) 72, 196
AclWI GGATC 3 cut(s) 211, 433, 446
AcsI RAATTY 2 cut(s) 136, 278
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 2 cut(s) 316, 346
AluBI AGCT 4 cut(s) 25, 80, 146, 294
AluI AGCT 4 cut(s) 25, 80, 146, 294
Alw21I GWGCWC 2 cut(s) 148, 155
Alw44I GTGCAC 1 cut(s) 151
AlwI GGATC 3 cut(s) 211, 433, 446
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 2 cut(s) 314, 343
ApaLI GTGCAC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 22, 25
ApoI RAATTY 2 cut(s) 136, 278
AspS9I GGNCC 2 cut(s) 314, 344
AsuHPI GGTGA 2 cut(s) 86, 122
BaeGI GKGCMC 1 cut(s) 155
BamHI GGATCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 2 cut(s) 148, 155
BbvI GCAGC 2 cut(s) 12, 34
BccI CCATC 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 2 cut(s) 318, 348
BisI GCNGC 2 cut(s) 23, 26
BlsI GCNGC 2 cut(s) 24, 27
Bme1390I CCNGG 2 cut(s) 318, 348
BmgT120I GGNCC 2 cut(s) 314, 344
BmiI GGNNCC 2 cut(s) 274, 440
BmrFI CCNGG 2 cut(s) 318, 348
BmsI GCATC 2 cut(s) 173, 207
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 273
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 220, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 2 cut(s) 318, 348
BseDI CCNNGG 2 cut(s) 220, 346
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 2 cut(s) 19, 32
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 2 cut(s) 12, 34
BshFI GGCC 2 cut(s) 316, 345
BsiHKAI GWGCWC 2 cut(s) 148, 155
BslI CCNNNNNNNGG 1 cut(s) 226
BsnI GGCC 2 cut(s) 316, 345
Bsp1286I GDGCHC 2 cut(s) 148, 155
Bsp143I GATC 2 cut(s) 216, 438
BspACI CCGC 2 cut(s) 72, 196
BspANI GGCC 2 cut(s) 316, 345
BspLI GGNNCC 2 cut(s) 274, 440
BspPI GGATC 3 cut(s) 211, 433, 446
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 220, 346
BssMI GATC 2 cut(s) 216, 438
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 318, 348
Bst4CI ACNGT 2 cut(s) 130, 382
BstC8I GCNNGC 1 cut(s) 343
BstKTI GATC 2 cut(s) 219, 441
BstMBI GATC 2 cut(s) 216, 438
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNI CCWGG 2 cut(s) 318, 348
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 316, 346
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 12, 34
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
BsuRI GGCC 2 cut(s) 316, 345
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 314, 344
Csp6I GTAC 1 cut(s) 351
CviAII CATG 2 cut(s) 308, 331
CviJI RGCY 7 cut(s) 25, 80, 146, 294, 316, 335, 345
CviKI_1 RGCY 7 cut(s) 25, 80, 146, 294, 316, 335, 345
CviQI GTAC 1 cut(s) 351
DpnI GATC 2 cut(s) 218, 440
DpnII GATC 2 cut(s) 216, 438
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 316, 346
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 311, 334
FaiI YATR 9 cut(s) 62, 171, 177, 215, 270, 309, 332, 420, 435
FatI CATG 2 cut(s) 307, 330
Fnu4HI GCNGC 2 cut(s) 23, 26
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 23, 26
GluI GCNGC 2 cut(s) 23, 26
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 316, 345
Hin1II CATG 2 cut(s) 311, 334
HinfI GANTC 2 cut(s) 361, 422
HphI GGTGA 2 cut(s) 86, 122
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 130, 382
HpyCH4V TGCA 3 cut(s) 28, 153, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
Hsp92II CATG 2 cut(s) 311, 334
Kzo9I GATC 2 cut(s) 216, 438
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 7 cut(s) 141, 237, 303, 327, 330, 333, 360
Lsp1109I GCAGC 2 cut(s) 12, 34
LweI GCATC 2 cut(s) 173, 207
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 218, 440
MboI GATC 2 cut(s) 216, 438
MboII GAAGA 1 cut(s) 409
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 2 cut(s) 148, 155
MluCI AATT 3 cut(s) 136, 278, 410
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 7 cut(s) 4, 10, 106, 218, 248, 417, 443
MseI TTAA 2 cut(s) 204, 371
MspA1I CMGCKG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 318, 348
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 2 cut(s) 318, 348
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeII GATC 2 cut(s) 216, 438
NlaIII CATG 2 cut(s) 311, 334
NlaIV GGNNCC 2 cut(s) 274, 440
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 1 cut(s) 311
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 2 cut(s) 24, 27
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PsiI TTATAA 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 316, 346
PspGI CCWGG 2 cut(s) 316, 346
PspN4I GGNNCC 2 cut(s) 274, 440
PspPI GGNCC 2 cut(s) 314, 344
PsrI GAACNNNNNNTAC 2 cut(s) 256, 288
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SacI GAGCTC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 204, 371
SatI GCNGC 2 cut(s) 23, 26
Sau3AI GATC 2 cut(s) 216, 438
Sau96I GGNCC 2 cut(s) 314, 344
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 318, 348
SduI GDGCHC 2 cut(s) 148, 155
SetI ASST 6 cut(s) 15, 27, 82, 117, 148, 296
SfaNI GCATC 2 cut(s) 173, 207
Sse9I AATT 3 cut(s) 136, 278, 410
SsiI CCGC 2 cut(s) 72, 196
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 316, 346
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 130, 382
TaqI TCGA 1 cut(s) 88
TasI AATT 3 cut(s) 136, 278, 410
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 2 cut(s) 204, 371
Tru9I TTAA 2 cut(s) 204, 371
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 22, 25
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 435
TspRI CASTG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 151
XapI RAATTY 2 cut(s) 136, 278
XceI RCATGY 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.