Rroxscaffold_6G00396620

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005159
Physical Location & Seq
Reverse (-)
18136532 .. 18140275
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396620.1

Sequence Viewer

Length: 753 bp
ATGGCATCTGCTGCGACTTCAATCTCGGTGCAATTTCTTCAAACCCAAAAAGGGAGCAATCTTGTTCCTTGTGCTCGTCATGTTCGGGTGAATTCCAAAGCTTTCTTTGGTGGGAGGTTGCAGACCACGACTGGTACTGTGTTATGCAAACGCAGGCCTCGCTGCGCATCGGTTTCTGTGAAGCCTCGGACAATGGTGTGCGTTAACTCTATAGCAAATGAGGTAGAGGAGCAGCTGCAAGCCAAAGTCACAACAAAGTGCTTCTTTGATATAGACATTGGCGGTGAAGCTGTTGGTCGGGTTGTGATTGGTCTTTTTGGTGAGGTTGTTCCTAAAACAGTAGAGAATTTCCGAGCTCTGTGCACAGGAGAGAAAGGATATGGTTATAAAGGATGCTCATTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACTGGAGGGATCAGTATCTATGGTTCCAAATTTGAAGATGAGAGCTTTGCTTTGAAGCATGTTGGGCCTGGTGTATTGAGCATGGCTAATGCAGGCCCTGGTACAAATGGGAGTCAGTTTTTTATCTGCACAGTAAAGACTCCATGGTTGGACAATCGACACGTTGTGTTCGGACATATAATTGAGGGAATGGATGTTGTGCGGAAACTTGAATCCCAAGAGACAAGTAGGTCAGATGTCCCTCGCTTGCCATGCAGAATTGTAAACTGTGGAGAGTTGGTTATTGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

250

Amino Acids

27.05

Weight (kDa)

8.68

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 89 - 244 1.9e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AasI GACNNNNNNGTC 1 cut(s) 688
Acc16I TGCGCA 1 cut(s) 166
AciI CCGC 3 cut(s) 282, 406, 661
AclWI GGATC 2 cut(s) 421, 476
AcsI RAATTY 3 cut(s) 91, 346, 488
AcuI CTGAAG 1 cut(s) 468
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 2 cut(s) 136, 562
AfiI CCNNNNNNNGG 2 cut(s) 51, 436
AflIII ACRYGT 1 cut(s) 619
AgsI TTSAA 5 cut(s) 21, 41, 494, 514, 671
AjnI CCWGG 2 cut(s) 526, 556
AluBI AGCT 5 cut(s) 101, 235, 290, 356, 504
AluI AGCT 5 cut(s) 101, 235, 290, 356, 504
Alw21I GWGCWC 3 cut(s) 76, 358, 365
Alw26I GTCTC 1 cut(s) 674
Alw44I GTGCAC 1 cut(s) 361
AlwI GGATC 2 cut(s) 421, 476
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 3 cut(s) 155, 524, 553
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 4 cut(s) 11, 162, 232, 235
ApoI RAATTY 3 cut(s) 91, 346, 488
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 524, 554
AsuHPI GGTGA 3 cut(s) 100, 296, 332
BaeGI GKGCMC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 358
Bbv12I GWGCWC 3 cut(s) 76, 358, 365
BbvI GCAGC 3 cut(s) 149, 222, 244
BccI CCATC 2 cut(s) 449, 740
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciT130I CCWGG 2 cut(s) 528, 558
BcoDI GTCTC 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 4 cut(s) 12, 163, 233, 236
BlsI GCNGC 4 cut(s) 13, 164, 234, 237
Bme1390I CCNGG 2 cut(s) 528, 558
BmgT120I GGNCC 2 cut(s) 524, 554
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 2 cut(s) 528, 558
BmsI GCATC 4 cut(s) 14, 176, 383, 417
BpmI CTGGAG 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 473
BsaJI CCNNGG 4 cut(s) 185, 430, 556, 602
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 436
Bse1I ACTGG 2 cut(s) 136, 466
Bse8I GATNNNNATC 1 cut(s) 473
BseBI CCWGG 2 cut(s) 528, 558
BseDI CCNNGG 4 cut(s) 185, 430, 556, 602
BseGI GGATG 2 cut(s) 398, 658
BseJI GATNNNNATC 1 cut(s) 473
BseLI CCNNNNNNNGG 2 cut(s) 51, 436
BseNI ACTGG 2 cut(s) 136, 466
BseRI GAGGAG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 3 cut(s) 149, 222, 244
BsgI GTGCAG 1 cut(s) 571
BshFI GGCC 3 cut(s) 157, 526, 555
BsiHKAI GWGCWC 3 cut(s) 76, 358, 365
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 2 cut(s) 51, 436
BsmAI GTCTC 1 cut(s) 674
BsmFI GGGAC 1 cut(s) 683
BsnI GGCC 3 cut(s) 157, 526, 555
Bsp1286I GDGCHC 3 cut(s) 76, 358, 365
Bsp143I GATC 2 cut(s) 426, 468
Bsp19I CCATGG 1 cut(s) 602
BspACI CCGC 3 cut(s) 282, 406, 661
BspANI GGCC 3 cut(s) 157, 526, 555
BspLI GGNNCC 1 cut(s) 484
BspPI GGATC 2 cut(s) 421, 476
BsrI ACTGG 2 cut(s) 136, 466
BssECI CCNNGG 4 cut(s) 185, 430, 556, 602
BssMI GATC 2 cut(s) 426, 468
BssT1I CCWWGG 2 cut(s) 430, 602
Bst2UI CCWGG 2 cut(s) 528, 558
Bst4CI ACNGT 4 cut(s) 139, 340, 592, 728
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 155, 240, 553, 707
BstDSI CCRYGG 1 cut(s) 602
BstF5I GGATG 2 cut(s) 398, 658
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 2 cut(s) 429, 471
BstMAI GTCTC 1 cut(s) 674
BstMBI GATC 2 cut(s) 426, 468
BstMWI GCNNNNNNNGC 4 cut(s) 11, 159, 523, 711
BstNI CCWGG 2 cut(s) 528, 558
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 526, 556
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 149, 222, 244
BsuRI GGCC 3 cut(s) 157, 526, 555
BtgI CCRYGG 1 cut(s) 602
BtsCI GGATG 2 cut(s) 398, 658
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 4 cut(s) 155, 240, 553, 707
CaiI CAGNNNCTG 1 cut(s) 557
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 524, 554
Csp6I GTAC 2 cut(s) 135, 561
CviAII CATG 5 cut(s) 80, 518, 541, 603, 711
CviQI GTAC 2 cut(s) 135, 561
DpnI GATC 2 cut(s) 428, 470
DpnII GATC 2 cut(s) 426, 468
DraIII CACNNNGTG 1 cut(s) 625
DrdI GACNNNNNNGTC 1 cut(s) 688
DseDI GACNNNNNNGTC 1 cut(s) 688
Ecl136II GAGCTC 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 430, 602
Eco147I AGGCCT 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 554
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 526, 556
EcoT14I CCWWGG 2 cut(s) 430, 602
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 2 cut(s) 430, 602
FaeI CATG 5 cut(s) 83, 521, 544, 606, 714
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 683
FatI CATG 5 cut(s) 79, 517, 540, 602, 710
Fnu4HI GCNGC 4 cut(s) 12, 163, 233, 236
FokI GGATG 2 cut(s) 405, 665
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 4 cut(s) 12, 163, 233, 236
FspI TGCGCA 1 cut(s) 166
GlaI GCGC 1 cut(s) 166
GluI GCNGC 4 cut(s) 12, 163, 233, 236
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 3 cut(s) 157, 526, 555
HhaI GCGC 1 cut(s) 167
Hin1II CATG 5 cut(s) 83, 521, 544, 606, 714
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 3 cut(s) 571, 598, 671
HpaI GTTAAC 1 cut(s) 205
HphI GGTGA 3 cut(s) 100, 296, 332
Hpy166II GTNNAC 3 cut(s) 205, 363, 724
Hpy188I TCNGA 4 cut(s) 189, 353, 632, 694
Hpy8I GTNNAC 3 cut(s) 205, 363, 724
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 4 cut(s) 139, 340, 592, 728
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 8 cut(s) 31, 121, 147, 238, 363, 551, 588, 714
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 159, 523, 711
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 5 cut(s) 83, 521, 544, 606, 714
HspAI GCGC 1 cut(s) 165
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 426, 468
LmnI GCTCC 2 cut(s) 54, 229
LpnPI CCDG 9 cut(s) 117, 139, 351, 447, 513, 537, 540, 543, 570
Lsp1109I GCAGC 3 cut(s) 149, 222, 244
LweI GCATC 4 cut(s) 14, 176, 383, 417
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 428, 470
MboI GATC 2 cut(s) 426, 468
MboII GAAGA 2 cut(s) 29, 506
MhlI GDGCHC 3 cut(s) 76, 358, 365
MluCI AATT 6 cut(s) 32, 91, 346, 488, 639, 717
MlyI GAGTC 2 cut(s) 580, 592
MmeI TCCRAC 1 cut(s) 588
MseI TTAA 2 cut(s) 204, 414
MspA1I CMGCKG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 528, 558
MvaI CCWGG 2 cut(s) 528, 558
MwoI GCNNNNNNNGC 4 cut(s) 11, 159, 523, 711
NcoI CCATGG 1 cut(s) 602
NdeII GATC 2 cut(s) 426, 468
NlaIII CATG 5 cut(s) 83, 521, 544, 606, 714
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 247
NsbI TGCGCA 1 cut(s) 166
NspI RCATGY 1 cut(s) 521
PceI AGGCCT 1 cut(s) 157
PfeI GAWTC 1 cut(s) 671
PkrI GCNGC 4 cut(s) 13, 164, 234, 237
PleI GAGTC 2 cut(s) 579, 592
PpsI GAGTC 2 cut(s) 579, 592
PsiI TTATAA 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 358
Psp6I CCWGG 2 cut(s) 526, 556
PspGI CCWGG 2 cut(s) 526, 556
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 2 cut(s) 524, 554
PsrI GAACNNNNNNTAC 2 cut(s) 466, 498
PstNI CAGNNNCTG 1 cut(s) 557
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 2 cut(s) 136, 562
RsaNI GTAC 2 cut(s) 135, 561
SacI GAGCTC 1 cut(s) 358
SaqAI TTAA 2 cut(s) 204, 414
SatI GCNGC 4 cut(s) 12, 163, 233, 236
Sau3AI GATC 2 cut(s) 426, 468
Sau96I GGNCC 2 cut(s) 524, 554
SchI GAGTC 2 cut(s) 580, 592
ScrFI CCNGG 2 cut(s) 528, 558
SduI GDGCHC 3 cut(s) 76, 358, 365
SfaNI GCATC 4 cut(s) 14, 176, 383, 417
SfcI CTRYAG 1 cut(s) 210
Sse9I AATT 6 cut(s) 32, 91, 346, 488, 639, 717
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 3 cut(s) 282, 406, 661
SstI GAGCTC 1 cut(s) 358
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 526, 556
StyI CCWWGG 2 cut(s) 430, 602
TaaI ACNGT 4 cut(s) 139, 340, 592, 728
TaiI ACGT 1 cut(s) 624
TaqI TCGA 1 cut(s) 616
TasI AATT 6 cut(s) 32, 91, 346, 488, 639, 717
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 2 cut(s) 204, 414
Tru9I TTAA 2 cut(s) 204, 414
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 4 cut(s) 11, 162, 232, 235
Tsp45I GTSAC 1 cut(s) 247
TspRI CASTG 1 cut(s) 451
VneI GTGCAC 1 cut(s) 361
XapI RAATTY 3 cut(s) 91, 346, 488
XceI RCATGY 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.