Rh4CG129700

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005159
Physical Location & Seq
Forward (+)
25441938 .. 25473472
31535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG129700.1

Sequence Viewer

Length: 891 bp
ATGGCAAAGGAGGTAGAGGAGCAGCTGCAATCCAAAGTCACAACAAAGTTTTTTTTTGATATAGACATTGGCGGTGAAGCTGTTGGTCGAGTTGTGATTGGTCTTTTTGGTGAGGTTGTTCCTAAAACAGTAGAGAATTTCCGAGCTCTGTGCACAGGAGAGAAAGGATATGGTTATAAAAGATGCTCGTTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACTGGAGGGATCAGTATCTATGGTTCCAAATTTGATGATGAGAGCTTTGCTTTGAAGCATGTTGGGCCTGGTGTATTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGTCAGTTTTTAATCGGCACAGTAAAGGAAAATGATCCTACAAGGAGGAAGTTGACTGATCAGCAAGCTTTCCAAATTTCAAAGATGCCTGGAGTTGTTTCGGTTTTTCCCAACTCGAAAAGGATAAATGTCATTGTCGGTTTCATTGATACTGTGAATGCAGGAATTTGGCCTGAATCTCCAAGTTTTAATGATGACAACATGCCTCCAGTGCCAGCTAGATGGAAGGGGGTTTGTCAATCAGGAGAGGCATTCAATGCTTCAACTTGCAACAGAAAAGTGATTGGGGCTACTATAAGTCCGGTTATGAAGCCGAGGAAGATTCAGCGGACACAGTGGCATTCAGTTCTCCAAGGGACAGTGCCGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGTTAAGCCTGTTGTTTACTTGTTTCATCTCAACCCCAAAGCTGATTTATCTGTTGTTGGTTTCGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

296

Amino Acids

32.48

Weight (kDa)

8.26

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 19 - 132 4e-29 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 727
AciI CCGC 4 cut(s) 72, 196, 688, 725
AclWI GGATC 4 cut(s) 211, 266, 389, 787
AcsI RAATTY 4 cut(s) 136, 278, 435, 525
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 2 cut(s) 226, 766
AgsI TTSAA 5 cut(s) 304, 441, 616, 624, 809
AjnI CCWGG 3 cut(s) 316, 346, 448
AluBI AGCT 8 cut(s) 25, 80, 146, 294, 428, 578, 779, 860
AluI AGCT 8 cut(s) 25, 80, 146, 294, 428, 578, 779, 860
Alw21I GWGCWC 2 cut(s) 148, 155
Alw44I GTGCAC 1 cut(s) 151
AlwI GGATC 4 cut(s) 211, 266, 389, 787
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 3 cut(s) 314, 343, 530
ApaLI GTGCAC 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 22, 25, 779
ApoI RAATTY 4 cut(s) 136, 278, 435, 525
AspS9I GGNCC 2 cut(s) 314, 344
AsuHPI GGTGA 2 cut(s) 86, 122
BaeGI GKGCMC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 148, 155
BbvI GCAGC 3 cut(s) 12, 34, 766
BccI CCATC 3 cut(s) 239, 576, 740
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 3 cut(s) 318, 348, 450
BclI TGATCA 1 cut(s) 418
BfaI CTAG 2 cut(s) 579, 764
BisI GCNGC 4 cut(s) 23, 26, 725, 780
BlsI GCNGC 4 cut(s) 24, 27, 726, 781
Bme1390I CCNGG 3 cut(s) 318, 348, 450
BmgT120I GGNCC 2 cut(s) 314, 344
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 3 cut(s) 318, 348, 450
BmsI GCATC 3 cut(s) 173, 207, 435
BpmI CTGGAG 3 cut(s) 273, 471, 552
BpuEI CTTGAG 2 cut(s) 713, 761
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 4 cut(s) 220, 346, 674, 712
BsaWI WCCGGW 1 cut(s) 661
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 766
Bse1I ACTGG 3 cut(s) 256, 569, 776
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 3 cut(s) 318, 348, 450
BseDI CCNNGG 4 cut(s) 220, 346, 674, 712
BseGI GGATG 1 cut(s) 751
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 2 cut(s) 226, 766
BseNI ACTGG 3 cut(s) 256, 569, 776
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 3 cut(s) 12, 34, 766
BshFI GGCC 3 cut(s) 316, 345, 532
BsiHKAI GWGCWC 2 cut(s) 148, 155
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 2 cut(s) 730, 782
BslI CCNNNNNNNGG 2 cut(s) 226, 766
BsmFI GGGAC 2 cut(s) 730, 782
BsmI GAATGC 3 cut(s) 523, 611, 700
BsnI GGCC 3 cut(s) 316, 345, 532
Bsp1286I GDGCHC 2 cut(s) 148, 155
Bsp143I GATC 5 cut(s) 216, 258, 394, 418, 792
BspACI CCGC 4 cut(s) 72, 196, 688, 725
BspANI GGCC 3 cut(s) 316, 345, 532
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 4 cut(s) 211, 266, 389, 787
BsrBI CCGCTC 1 cut(s) 727
BsrI ACTGG 3 cut(s) 256, 569, 776
BssECI CCNNGG 4 cut(s) 220, 346, 674, 712
BssMI GATC 5 cut(s) 216, 258, 394, 418, 792
BssT1I CCWWGG 2 cut(s) 220, 712
Bst2UI CCWGG 3 cut(s) 318, 348, 450
Bst4CI ACNGT 6 cut(s) 130, 382, 514, 696, 721, 820
BstAPI GCANNNNNTGC 1 cut(s) 617
BstC8I GCNNGC 3 cut(s) 343, 426, 576
BstF5I GGATG 1 cut(s) 751
BstKTI GATC 5 cut(s) 219, 261, 397, 421, 795
BstMBI GATC 5 cut(s) 216, 258, 394, 418, 792
BstMWI GCNNNNNNNGC 3 cut(s) 313, 571, 617
BstNI CCWGG 3 cut(s) 318, 348, 450
BstNSI RCATGY 2 cut(s) 311, 565
BstSCI CCNGG 3 cut(s) 316, 346, 448
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 12, 34, 766
BstX2I RGATCY 1 cut(s) 792
BstXI CCANNNNNNTGG 1 cut(s) 582
BstYI RGATCY 1 cut(s) 792
BsuRI GGCC 3 cut(s) 316, 345, 532
BtsCI GGATG 1 cut(s) 751
BtsIMutI CAGTG 4 cut(s) 234, 576, 701, 726
Cac8I GCNNGC 3 cut(s) 343, 426, 576
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 314, 344
Csp6I GTAC 1 cut(s) 351
CviAII CATG 4 cut(s) 308, 331, 562, 735
CviQI GTAC 1 cut(s) 351
DpnI GATC 5 cut(s) 218, 260, 396, 420, 794
DpnII GATC 5 cut(s) 216, 258, 394, 418, 792
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 220, 712
Eco24I GRGCYC 1 cut(s) 148
Eco32I GATATC 1 cut(s) 757
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 3 cut(s) 316, 346, 448
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 220, 712
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 2 cut(s) 220, 712
FaeI CATG 4 cut(s) 311, 334, 565, 738
FaqI GGGAC 2 cut(s) 730, 782
FatI CATG 4 cut(s) 307, 330, 561, 734
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 23, 26, 725, 780
FokI GGATG 1 cut(s) 758
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 23, 26, 725, 780
FspBI CTAG 2 cut(s) 579, 764
GluI GCNGC 4 cut(s) 23, 26, 725, 780
GsuI CTGGAG 3 cut(s) 273, 471, 552
HaeIII GGCC 3 cut(s) 316, 345, 532
HapII CCGG 1 cut(s) 662
Hin1II CATG 4 cut(s) 311, 334, 565, 738
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 3 cut(s) 361, 536, 682
HpaII CCGG 1 cut(s) 662
HphI GGTGA 2 cut(s) 86, 122
Hpy166II GTNNAC 3 cut(s) 153, 414, 835
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 4 cut(s) 603, 790, 796, 883
Hpy8I GTNNAC 3 cut(s) 153, 414, 835
HpyAV CCTTC 2 cut(s) 233, 580
HpyCH4III ACNGT 6 cut(s) 130, 382, 514, 696, 721, 820
HpyCH4V TGCA 5 cut(s) 28, 153, 341, 521, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 571, 617
Hsp92II CATG 4 cut(s) 311, 334, 565, 738
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 5 cut(s) 216, 258, 394, 418, 792
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 3 cut(s) 12, 34, 766
LweI GCATC 3 cut(s) 173, 207, 435
MaeI CTAG 2 cut(s) 579, 764
MaeIII GTNAC 1 cut(s) 37
MalI GATC 5 cut(s) 218, 260, 396, 420, 794
MbiI CCGCTC 1 cut(s) 727
MboI GATC 5 cut(s) 216, 258, 394, 418, 792
MboII GAAGA 1 cut(s) 691
MfeI CAATTG 1 cut(s) 809
MflI RGATCY 1 cut(s) 792
MhlI GDGCHC 2 cut(s) 148, 155
MluCI AATT 5 cut(s) 136, 278, 435, 525, 809
MlyI GAGTC 1 cut(s) 370
MseI TTAA 4 cut(s) 204, 371, 549, 822
MspA1I CMGCKG 2 cut(s) 25, 688
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 3 cut(s) 318, 348, 450
MunI CAATTG 1 cut(s) 809
Mva1269I GAATGC 3 cut(s) 523, 611, 700
MvaI CCWGG 3 cut(s) 318, 348, 450
MwoI GCNNNNNNNGC 3 cut(s) 313, 571, 617
NdeII GATC 5 cut(s) 216, 258, 394, 418, 792
NlaIII CATG 4 cut(s) 311, 334, 565, 738
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 1 cut(s) 699
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 2 cut(s) 311, 565
PctI GAATGC 3 cut(s) 523, 611, 700
PfeI GAWTC 2 cut(s) 536, 682
PkrI GCNGC 4 cut(s) 24, 27, 726, 781
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PsiI TTATAA 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 3 cut(s) 316, 346, 448
PspGI CCWGG 3 cut(s) 316, 346, 448
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 314, 344
PsrI GAACNNNNNNTAC 2 cut(s) 256, 288
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 792
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SacI GAGCTC 1 cut(s) 148
SaqAI TTAA 4 cut(s) 204, 371, 549, 822
SatI GCNGC 4 cut(s) 23, 26, 725, 780
Sau3AI GATC 5 cut(s) 216, 258, 394, 418, 792
Sau96I GGNCC 2 cut(s) 314, 344
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 3 cut(s) 318, 348, 450
SduI GDGCHC 2 cut(s) 148, 155
SfaNI GCATC 3 cut(s) 173, 207, 435
SmlI CTYRAG 2 cut(s) 728, 740
SmoI CTYRAG 2 cut(s) 728, 740
Sse9I AATT 5 cut(s) 136, 278, 435, 525, 809
SsiI CCGC 4 cut(s) 72, 196, 688, 725
SspMI CTAG 2 cut(s) 579, 764
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 3 cut(s) 316, 346, 448
StyI CCWWGG 2 cut(s) 220, 712
TaaI ACNGT 6 cut(s) 130, 382, 514, 696, 721, 820
TaqI TCGA 4 cut(s) 88, 476, 789, 882
TasI AATT 5 cut(s) 136, 278, 435, 525, 809
TauI GCSGC 1 cut(s) 727
TfiI GAWTC 2 cut(s) 536, 682
Tru1I TTAA 4 cut(s) 204, 371, 549, 822
Tru9I TTAA 4 cut(s) 204, 371, 549, 822
TscAI CASTG 4 cut(s) 241, 576, 701, 726
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 3 cut(s) 22, 25, 779
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 493, 683, 833
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 4 cut(s) 241, 576, 701, 726
VneI GTGCAC 1 cut(s) 151
XapI RAATTY 4 cut(s) 136, 278, 435, 525
XceI RCATGY 2 cut(s) 311, 565
XspI CTAG 2 cut(s) 579, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.