Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005159

Physical Location & Seq

Genomic Coordinates Forward (+)

95037 .. 97662

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G001000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCTATGGCCTCTGCATCTGCTGTCTCAGTGCAAATCTTTCACACCCAGAGACGCACTCTTTCTCCTCCTTTCCGTCATTTCCAGTTCCAGGGTGGTTATAGCCAATGTTCCATGCCATATGTGACATCCACTGCTACTGCTAAAAGGTTGCAGGTCACTCTACGCAGGCCTCCCTATGCATCCAGATTCTCTGCCAAACATCAAACAATGGTGTGCACCAACTCTATGTCAAATGATGTAGAGCAGCTGCAAGCCAAAGTAACAACCAAGTGCTTCTTTGACACAGAAATTGGCGGTGAAGCTGTTGGTCGGCTTGTACTGGGCCTCTTTGGTGACGTTGTTCCTAAAACCGTTGAAAACTTTCGCGCCTTGTGCACAGGAGAGAAAGGATATGGTTATAAAGGATGCTCTTTCCACCGCATCATTAAAGATTTTATGATCCAAGGAGGGGACTTCACTGAAGGAGATGGAACAGGGGGAGTTAGTATCTATGGTTCCACATTTGCAGATGAGAGCTTTGCATTGAAGCATGTTGGCCCTGGTGTACTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGCCAGTTTTTCATCTGCACAGTGAAGACTCCATGGTTGGACAATCGCCATGTGGTGTTCGGACACGTGATTGAGGGAATGGATGTTCTGCGGAAACTTGAATCCCAAGAGACAAGCAGGTCAGATGTCCCTCGTTTGCCATGCAGAATTGTTAACTGTGGAGAGTTGCTTTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

255

Amino Acids

27.83

Weight (kDa)

8.62

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62030 AT3G62030 AT3G62030
fragaria_vesca	FvH4_1g26090
malus_domestica	MD10G1124600.v1.1 MD17G1286000.v1.1
prunus_persica	Prupe.3G001000_v2.0.a1 Prupe.3G001000_v2.0.a1
pyrus_communis	pycom17g28180
rosa_chinensis	RchiOBHm_Chr2g0135271 RchiOBHm_Chr2g0163561 RchiOBHm_Chr3g0485561 RchiOBHm_Chr3g0491891 RchiOBHm_Chr7g0181211
rosa_multiflora	Rmu_sc0001272.1_g000012 Rmu_sc0004711.1_g000017 Rmu_sc0008124.1_g000023 Rmu_sc0011240.1_g000010
rosa_roxburghii	Rroxscaffold_6G00396620 Rroxscaffold_6G00396920
rosa_rugosa	Rorug03G0220100
rosa_samantha	Rh3BG085100 Rh3BG304200 Rh3CG085300 Rh3CG302500 Rh3DG299100 Rh4CG129700 Rh7DG041000
rosa_wichuraiana	Rw3G023950 Rw3G024060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AasI	GACNNNNNNGTC	1 cut(s)	703
Acc36I	ACCTGC	2 cut(s)	145, 693
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	297, 421, 676
AclWI	GGATC	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	483
AcvI	CACGTG	1 cut(s)	652
AfaI	GTAC	3 cut(s)	321, 549, 577
AfiI	CCNNNNNNNGG	2 cut(s)	91, 451
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	3 cut(s)	359, 529, 686
AjnI	CCWGG	3 cut(s)	90, 541, 571
AloI	GAACNNNNNNTCC	2 cut(s)	654, 686
AluBI	AGCT	3 cut(s)	250, 305, 519
AluI	AGCT	3 cut(s)	250, 305, 519
Alw21I	GWGCWC	2 cut(s)	221, 380
Alw26I	GTCTC	3 cut(s)	31, 46, 689
Alw44I	GTGCAC	2 cut(s)	217, 376
AlwI	GGATC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	5 cut(s)	9, 170, 325, 538, 568
ApaLI	GTGCAC	2 cut(s)	217, 376
ApeKI	GCWGC	2 cut(s)	247, 250
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	3 cut(s)	325, 539, 569
AsuHPI	GGTGA	2 cut(s)	311, 347
BaeGI	GKGCMC	2 cut(s)	221, 380
BbrPI	CACGTG	1 cut(s)	652
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	2 cut(s)	221, 380
BbvI	GCAGC	2 cut(s)	237, 259
BccI	CCATC	1 cut(s)	464
BciT130I	CCWGG	3 cut(s)	92, 543, 573
BcoDI	GTCTC	3 cut(s)	31, 46, 689
BfuAI	ACCTGC	2 cut(s)	145, 693
BisI	GCNGC	2 cut(s)	248, 251
BlsI	GCNGC	2 cut(s)	249, 252
Bme1390I	CCNGG	3 cut(s)	92, 543, 573
BmgT120I	GGNCC	3 cut(s)	325, 539, 569
BmiI	GGNNCC	2 cut(s)	499, 587
BmrFI	CCNGG	3 cut(s)	92, 543, 573
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	4 cut(s)	26, 191, 398, 432
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	617
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BsaAI	YACGTR	1 cut(s)	652
BsaJI	CCNNGG	5 cut(s)	91, 445, 541, 571, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 451
Bse1I	ACTGG	3 cut(s)	85, 327, 589
BseBI	CCWGG	3 cut(s)	92, 543, 573
BseDI	CCNNGG	5 cut(s)	91, 445, 541, 571, 617
BseGI	GGATG	4 cut(s)	128, 182, 413, 673
BseLI	CCNNNNNNNGG	2 cut(s)	91, 451
BseMII	CTCAG	2 cut(s)	42, 542
BseNI	ACTGG	3 cut(s)	85, 327, 589
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	2 cut(s)	221, 380
BseXI	GCAGC	2 cut(s)	237, 259
BsgI	GTGCAG	1 cut(s)	586
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	5 cut(s)	11, 172, 327, 540, 570
BsiHKAI	GWGCWC	2 cut(s)	221, 380
BslFI	GGGAC	2 cut(s)	467, 698
BslI	CCNNNNNNNGG	2 cut(s)	91, 451
BsmAI	GTCTC	3 cut(s)	31, 46, 689
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	467, 698
BsnI	GGCC	5 cut(s)	11, 172, 327, 540, 570
Bsp1286I	GDGCHC	2 cut(s)	221, 380
Bsp143I	GATC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	3 cut(s)	297, 421, 676
BspANI	GGCC	5 cut(s)	11, 172, 327, 540, 570
BspCNI	CTCAG	2 cut(s)	41, 543
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	499, 587
BspMI	ACCTGC	2 cut(s)	145, 693
BspPI	GGATC	1 cut(s)	436
BsrI	ACTGG	3 cut(s)	85, 327, 589
BssECI	CCNNGG	5 cut(s)	91, 445, 541, 571, 617
BssMI	GATC	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	445, 617
Bst2UI	CCWGG	3 cut(s)	92, 543, 573
Bst4CI	ACNGT	3 cut(s)	355, 607, 743
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	3 cut(s)	170, 255, 568
BstDEI	CTNAG	2 cut(s)	28, 551
BstDSI	CCRYGG	1 cut(s)	617
BstF5I	GGATG	4 cut(s)	128, 182, 413, 673
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	3 cut(s)	31, 46, 689
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	3 cut(s)	92, 543, 573
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	3 cut(s)	90, 541, 571
BstSLI	GKGCMC	2 cut(s)	221, 380
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	237, 259
BstV2I	GAAGAC	1 cut(s)	617
BsuRI	GGCC	5 cut(s)	11, 172, 327, 540, 570
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	4 cut(s)	128, 182, 413, 673
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	4 cut(s)	36, 132, 459, 612
BveI	ACCTGC	2 cut(s)	145, 693
Cac8I	GCNNGC	3 cut(s)	170, 255, 568
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	3 cut(s)	325, 539, 569
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	320, 548, 576
CviAII	CATG	6 cut(s)	115, 533, 556, 618, 635, 726
CviQI	GTAC	3 cut(s)	320, 548, 576
DdeI	CTNAG	2 cut(s)	28, 551
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eco130I	CCWWGG	2 cut(s)	445, 617
Eco147I	AGGCCT	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	483
Eco72I	CACGTG	1 cut(s)	652
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	90, 541, 571
EcoT14I	CCWWGG	2 cut(s)	445, 617
EcoT22I	ATGCAT	1 cut(s)	184
ErhI	CCWWGG	2 cut(s)	445, 617
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	6 cut(s)	118, 536, 559, 621, 638, 729
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	2 cut(s)	467, 698
FatI	CATG	6 cut(s)	114, 532, 555, 617, 634, 725
FauNDI	CATATG	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	248, 251
FokI	GGATG	4 cut(s)	115, 169, 420, 680
Fsp4HI	GCNGC	2 cut(s)	248, 251
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	2 cut(s)	248, 251
HaeIII	GGCC	5 cut(s)	11, 172, 327, 540, 570
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	6 cut(s)	118, 536, 559, 621, 638, 729
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	3 cut(s)	189, 613, 686
HpaI	GTTAAC	1 cut(s)	739
HphI	GGTGA	2 cut(s)	311, 347
Hpy166II	GTNNAC	4 cut(s)	219, 378, 548, 739
Hpy188I	TCNGA	2 cut(s)	647, 709
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	4 cut(s)	219, 378, 548, 739
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	3 cut(s)	355, 607, 743
HpyCH4IV	ACGT	2 cut(s)	339, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	2 cut(s)	28, 551
HpySE526I	ACGT	2 cut(s)	339, 651
Hsp92II	CATG	6 cut(s)	118, 536, 559, 621, 638, 729
HspAI	GCGC	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	739
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	2 cut(s)	237, 259
LweI	GCATC	4 cut(s)	26, 191, 398, 432
MaeII	ACGT	2 cut(s)	339, 651
MaeIII	GTNAC	4 cut(s)	124, 157, 262, 335
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	1 cut(s)	622
MhlI	GDGCHC	2 cut(s)	221, 380
MluCI	AATT	2 cut(s)	291, 732
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	7 cut(s)	22, 78, 183, 338, 443, 652, 726
Mph1103I	ATGCAT	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	429, 738
MspA1I	CMGCKG	1 cut(s)	250
MspR9I	CCNGG	3 cut(s)	92, 543, 573
MvaI	CCWGG	3 cut(s)	92, 543, 573
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	375
NcoI	CCATGG	1 cut(s)	617
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	6 cut(s)	118, 536, 559, 621, 638, 729
NlaIV	GGNNCC	2 cut(s)	499, 587
NmuCI	GTSAC	3 cut(s)	124, 157, 335
NsiI	ATGCAT	1 cut(s)	184
NspI	RCATGY	1 cut(s)	536
PceI	AGGCCT	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	189, 686
PkrI	GCNGC	2 cut(s)	249, 252
PleI	GAGTC	1 cut(s)	607
PmaCI	CACGTG	1 cut(s)	652
PmlI	CACGTG	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	607
Ppu21I	YACGTR	1 cut(s)	652
PsiI	TTATAA	1 cut(s)	402
Psp6I	CCWGG	3 cut(s)	90, 541, 571
PspCI	CACGTG	1 cut(s)	652
PspGI	CCWGG	3 cut(s)	90, 541, 571
PspN4I	GGNNCC	2 cut(s)	499, 587
PspPI	GGNCC	3 cut(s)	325, 539, 569
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PstNI	CAGNNNCTG	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	3 cut(s)	321, 549, 577
RsaNI	GTAC	3 cut(s)	320, 548, 576
SaqAI	TTAA	2 cut(s)	429, 738
SatI	GCNGC	2 cut(s)	248, 251
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	3 cut(s)	325, 539, 569
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	3 cut(s)	92, 543, 573
SduI	GDGCHC	2 cut(s)	221, 380
SetI	ASST	8 cut(s)	152, 159, 252, 307, 342, 521, 654, 707
SfaNI	GCATC	4 cut(s)	26, 191, 398, 432
Sse9I	AATT	2 cut(s)	291, 732
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	3 cut(s)	297, 421, 676
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	3 cut(s)	90, 541, 571
StyI	CCWWGG	2 cut(s)	445, 617
TaaI	ACNGT	3 cut(s)	355, 607, 743
TaiI	ACGT	2 cut(s)	342, 654
TasI	AATT	2 cut(s)	291, 732
TatI	WGTACW	2 cut(s)	319, 547
TfiI	GAWTC	2 cut(s)	189, 686
Tru1I	TTAA	2 cut(s)	429, 738
Tru9I	TTAA	2 cut(s)	429, 738
TscAI	CASTG	4 cut(s)	36, 139, 466, 612
TseFI	GTSAC	3 cut(s)	124, 157, 335
TseI	GCWGC	2 cut(s)	247, 250
Tsp45I	GTSAC	3 cut(s)	124, 157, 335
TspDTI	ATGAA	1 cut(s)	586
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	4 cut(s)	36, 139, 466, 612
VneI	GTGCAC	2 cut(s)	217, 376
XceI	RCATGY	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	363
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.