Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005159

Physical Location & Seq

Genomic Coordinates Forward (+)

26204064 .. 26206132

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACCATGGCCTCACAGTCACAGTCACTCCAATTCTTTCACAGCCACATAATCATAAGAAAAAGCACTCTTCCTCCTCCTTCCGTTCCTTTTCATTTCCAGTTGCAGTTGCAGGGTGGTTATACTTATACGCCATATGCTACAGTTGGCGTTGTGCGCAGGAGGCCTCCCTCCAGATTCTCTCTCAAGTATCAAACAATGGCTATGGCCAATGCCAATGATGTAGAGCAGCAGCAGCCGCAGCTGCAAGCCACAGTCACAACCAAGTGCTTCTTTGACATAGATATTGGCGGCGAAGCTGTTGGTCGCCTTGTATTGGGCCTCTTCGGTCAAGTTGTTCCCAAAACCGTTGAAAACTTTCGCGCCTTGTGCACAGGAGAGAAAGGATATGGTTATAAAGGATGCTCTTTCCACCGCATCATCAAAGATTTTATGATCCAAGGAGGGGACTTCACTCAAGGAGATGGAACTGGGGGAGTTAGTATCTATGGTTCCAAATTTGCAGATGAGAGTTTTGCATTGAAGCATGTTGGTCCTGGTGTGCTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGCCAGTTTTTTATTTGCACGGTGAAGACTCCATGGTTGGACAACCGCCATGTGGTTTTTGGACACGTGATTGAGGGAATGGATGTTCTGAGGAAACTCGAGTCCCAAGAGACAAGCAGGCTAGATGTCCCTCGTTTGCCATGCAGAATAGTTAACTGTGGAGAGTTGCTGTTGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

254

Amino Acids

27.87

Weight (kDa)

8.51

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62030 AT3G62030 AT3G62030
fragaria_vesca	FvH4_1g26090
malus_domestica	MD10G1124600.v1.1 MD17G1286000.v1.1
prunus_persica	Prupe.3G001000_v2.0.a1 Prupe.3G001000_v2.0.a1
pyrus_communis	pycom17g28180
rosa_chinensis	RchiOBHm_Chr2g0135271 RchiOBHm_Chr2g0163561 RchiOBHm_Chr3g0485561 RchiOBHm_Chr3g0491891 RchiOBHm_Chr7g0181211
rosa_multiflora	Rmu_sc0001272.1_g000012 Rmu_sc0004711.1_g000017 Rmu_sc0008124.1_g000023 Rmu_sc0011240.1_g000010
rosa_roxburghii	Rroxscaffold_6G00396620 Rroxscaffold_6G00396920
rosa_rugosa	Rorug03G0220100
rosa_samantha	Rh3BG085100 Rh3BG304200 Rh3CG085300 Rh3CG302500 Rh3DG299100 Rh4CG129700 Rh7DG041000
rosa_wichuraiana	Rw3G023950 Rw3G024060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc16I	TGCGCA	1 cut(s)	158
AccII	CGCG	1 cut(s)	363
AciI	CCGC	4 cut(s)	239, 291, 415, 625
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	497
AcvI	CACGTG	1 cut(s)	646
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	3 cut(s)	316, 445, 631
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	2 cut(s)	353, 523
AjnI	CCWGG	2 cut(s)	535, 565
AloI	GAACNNNNNNTCC	2 cut(s)	648, 680
AluBI	AGCT	2 cut(s)	244, 299
AluI	AGCT	2 cut(s)	244, 299
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	683
Alw44I	GTGCAC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	5 cut(s)	9, 164, 207, 319, 562
ApaLI	GTGCAC	1 cut(s)	370
ApeKI	GCWGC	5 cut(s)	229, 232, 235, 241, 244
ApoI	RAATTY	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	159, 365
AspS9I	GGNCC	3 cut(s)	319, 533, 563
AsuHPI	GGTGA	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	5 cut(s)	231, 241, 244, 247, 253
BccI	CCATC	1 cut(s)	458
BciT130I	CCWGG	2 cut(s)	537, 567
BcoDI	GTCTC	1 cut(s)	683
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	7 cut(s)	230, 233, 236, 239, 242, 245, 292
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	7 cut(s)	231, 234, 237, 240, 243, 246, 293
Bme1390I	CCNGG	2 cut(s)	537, 567
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	3 cut(s)	319, 533, 563
BmiI	GGNNCC	2 cut(s)	493, 581
BmrFI	CCNGG	2 cut(s)	537, 567
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	392, 426
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	611
BpmI	CTGGAG	1 cut(s)	157
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	2 cut(s)	170, 441
BsaAI	YACGTR	1 cut(s)	646
BsaJI	CCNNGG	4 cut(s)	6, 439, 565, 611
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 58, 88
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 445, 631
Bse1I	ACTGG	3 cut(s)	100, 475, 583
BseBI	CCWGG	2 cut(s)	537, 567
BseDI	CCNNGG	4 cut(s)	6, 439, 565, 611
BseGI	GGATG	3 cut(s)	407, 667, 760
BseLI	CCNNNNNNNGG	3 cut(s)	316, 445, 631
BseMII	CTCAG	2 cut(s)	536, 659
BseNI	ACTGG	3 cut(s)	100, 475, 583
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	5 cut(s)	231, 241, 244, 247, 253
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	5 cut(s)	11, 166, 209, 321, 564
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	677
BslFI	GGGAC	3 cut(s)	461, 667, 692
BslI	CCNNNNNNNGG	3 cut(s)	316, 445, 631
BsmAI	GTCTC	1 cut(s)	683
BsmFI	GGGAC	3 cut(s)	461, 667, 692
BsnI	GGCC	5 cut(s)	11, 166, 209, 321, 564
BsoBI	CYCGRG	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	435
Bsp1720I	GCTNAGC	1 cut(s)	545
Bsp19I	CCATGG	2 cut(s)	6, 611
BspACI	CCGC	4 cut(s)	239, 291, 415, 625
BspANI	GGCC	5 cut(s)	11, 166, 209, 321, 564
BspCNI	CTCAG	2 cut(s)	537, 660
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	493, 581
BspPI	GGATC	1 cut(s)	430
BsrI	ACTGG	3 cut(s)	100, 475, 583
BssECI	CCNNGG	4 cut(s)	6, 439, 565, 611
BssMI	GATC	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	6, 439, 611
Bst2UI	CCWGG	2 cut(s)	537, 567
Bst4CI	ACNGT	7 cut(s)	18, 24, 145, 256, 349, 601, 737
Bst6I	CTCTTC	2 cut(s)	75, 329
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	3 cut(s)	249, 562, 698
BstDEI	CTNAG	2 cut(s)	545, 668
BstDSI	CCRYGG	2 cut(s)	6, 611
BstF5I	GGATG	3 cut(s)	407, 667, 760
BstFNI	CGCG	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	159, 365
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	7 cut(s)	156, 163, 235, 238, 241, 244, 369
BstNI	CCWGG	2 cut(s)	537, 567
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	535, 565
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	374
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	5 cut(s)	231, 241, 244, 247, 253
BstV2I	GAAGAC	1 cut(s)	611
BsuRI	GGCC	5 cut(s)	11, 166, 209, 321, 564
BtgI	CCRYGG	2 cut(s)	6, 611
BtsCI	GGATG	3 cut(s)	407, 667, 760
Cac8I	GCNNGC	3 cut(s)	249, 562, 698
CaiI	CAGNNNCTG	1 cut(s)	566
CfoI	GCGC	2 cut(s)	159, 365
Cfr13I	GGNCC	3 cut(s)	319, 533, 563
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	6 cut(s)	7, 527, 550, 612, 629, 720
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	2 cut(s)	545, 668
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	75, 329
EarI	CTCTTC	2 cut(s)	75, 329
Eco130I	CCWWGG	3 cut(s)	6, 439, 611
Eco147I	AGGCCT	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	533
Eco72I	CACGTG	1 cut(s)	646
Eco88I	CYCGRG	1 cut(s)	677
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	535, 565
EcoT14I	CCWWGG	3 cut(s)	6, 439, 611
ErhI	CCWWGG	3 cut(s)	6, 439, 611
FaeI	CATG	6 cut(s)	10, 530, 553, 615, 632, 723
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	3 cut(s)	461, 667, 692
FatI	CATG	6 cut(s)	6, 526, 549, 611, 628, 719
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	7 cut(s)	230, 233, 236, 239, 242, 245, 292
FokI	GGATG	2 cut(s)	414, 674
Fsp4HI	GCNGC	7 cut(s)	230, 233, 236, 239, 242, 245, 292
FspBI	CTAG	1 cut(s)	701
FspI	TGCGCA	1 cut(s)	158
GlaI	GCGC	2 cut(s)	158, 364
GluI	GCNGC	7 cut(s)	230, 233, 236, 239, 242, 245, 292
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	5 cut(s)	11, 166, 209, 321, 564
HhaI	GCGC	2 cut(s)	159, 365
Hin1II	CATG	6 cut(s)	10, 530, 553, 615, 632, 723
Hin6I	GCGC	2 cut(s)	157, 363
HinP1I	GCGC	2 cut(s)	157, 363
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	3 cut(s)	177, 607, 680
HpaI	GTTAAC	1 cut(s)	733
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	2 cut(s)	372, 733
Hpy188I	TCNGA	1 cut(s)	669
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	372, 733
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	7 cut(s)	18, 24, 145, 256, 349, 601, 737
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	9 cut(s)	106, 112, 247, 372, 503, 518, 560, 597, 723
HpyF10VI	GCNNNNNNNGC	7 cut(s)	156, 163, 235, 238, 241, 244, 369
HpyF3I	CTNAG	2 cut(s)	545, 668
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	6 cut(s)	10, 530, 553, 615, 632, 723
HspAI	GCGC	2 cut(s)	157, 363
KspAI	GTTAAC	1 cut(s)	733
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	579
Lsp1109I	GCAGC	5 cut(s)	231, 241, 244, 247, 253
LweI	GCATC	2 cut(s)	392, 426
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	18, 24, 256
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	3 cut(s)	62, 316, 616
MhlI	GDGCHC	1 cut(s)	374
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	32, 497
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	601, 689
MmeI	TCCRAC	2 cut(s)	597, 732
Mox20I	TGGCCA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	732
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	537, 567
MvaI	CCWGG	2 cut(s)	537, 567
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	7 cut(s)	156, 163, 235, 238, 241, 244, 369
NcoI	CCATGG	2 cut(s)	6, 611
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	6 cut(s)	10, 530, 553, 615, 632, 723
NlaIV	GGNNCC	2 cut(s)	493, 581
NmuCI	GTSAC	3 cut(s)	18, 24, 256
NsbI	TGCGCA	1 cut(s)	158
NspI	RCATGY	1 cut(s)	530
PaeR7I	CTCGAG	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	7 cut(s)	231, 234, 237, 240, 243, 246, 293
PleI	GAGTC	2 cut(s)	601, 688
PmaCI	CACGTG	1 cut(s)	646
PmlI	CACGTG	1 cut(s)	646
PpsI	GAGTC	2 cut(s)	601, 688
Ppu21I	YACGTR	1 cut(s)	646
PsiI	TTATAA	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	535, 565
PspCI	CACGTG	1 cut(s)	646
PspGI	CCWGG	2 cut(s)	535, 565
PspN4I	GGNNCC	2 cut(s)	493, 581
PspPI	GGNCC	3 cut(s)	319, 533, 563
PspXI	VCTCGAGB	1 cut(s)	677
PsrI	GAACNNNNNNTAC	2 cut(s)	475, 507
PstNI	CAGNNNCTG	1 cut(s)	566
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	7 cut(s)	230, 233, 236, 239, 242, 245, 292
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	3 cut(s)	319, 533, 563
SchI	GAGTC	2 cut(s)	601, 689
ScrFI	CCNGG	2 cut(s)	537, 567
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	3 cut(s)	246, 301, 648
SfaNI	GCATC	2 cut(s)	392, 426
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	677
SmlI	CTYRAG	3 cut(s)	185, 456, 677
SmoI	CTYRAG	3 cut(s)	185, 456, 677
Sse9I	AATT	2 cut(s)	32, 497
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	4 cut(s)	239, 291, 415, 625
SspMI	CTAG	1 cut(s)	701
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	535, 565
StyI	CCWWGG	3 cut(s)	6, 439, 611
TaaI	ACNGT	7 cut(s)	18, 24, 145, 256, 349, 601, 737
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	1 cut(s)	678
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	2 cut(s)	32, 497
TauI	GCSGC	2 cut(s)	241, 294
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TseFI	GTSAC	3 cut(s)	18, 24, 256
TseI	GCWGC	5 cut(s)	229, 232, 235, 241, 244
Tsp45I	GTSAC	3 cut(s)	18, 24, 256
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	73
VneI	GTGCAC	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XhoI	CTCGAG	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.