Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011240.1

Orthogroup ID

OG0005159

Physical Location & Seq

Genomic Coordinates Reverse (-)

27056 .. 28601

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011240.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgaccgaggaggacgaggaggaggaagaggaggacgacgacgatgatgaatacggcccctatcgtggcggcggcggcgggagtcgagagaaaggatatggttataaaagatgctcgttccaccgcatcattaaggattttatgatccaaggaggggatttcactgaaggagatggaactggagggatcagtatctatggttccaaatttgatgatgagagctttgctttgaagcatgttgggcctggtgtattgagcatggctaatgcaggccctggtactaatgggagtcagtttttaatcggcacagtaaagactccatggttggacaatcgacacgttgtgttcggacatatacttgagggaatggatgttgtgcggaaacttgaatcccaagagacaagtaggtcagatgtccctcgcttaccatgcagaattgtaaactgtggagagttggttattgatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

156

Amino Acids

17.08

Weight (kDa)

4.53

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62030 AT3G62030 AT3G62030
fragaria_vesca	FvH4_1g26090
malus_domestica	MD10G1124600.v1.1 MD17G1286000.v1.1
prunus_persica	Prupe.3G001000_v2.0.a1 Prupe.3G001000_v2.0.a1
pyrus_communis	pycom17g28180
rosa_chinensis	RchiOBHm_Chr2g0135271 RchiOBHm_Chr2g0163561 RchiOBHm_Chr3g0485561 RchiOBHm_Chr3g0491891 RchiOBHm_Chr7g0181211
rosa_multiflora	Rmu_sc0001272.1_g000012 Rmu_sc0004711.1_g000017 Rmu_sc0008124.1_g000023 Rmu_sc0011240.1_g000010
rosa_roxburghii	Rroxscaffold_6G00396620 Rroxscaffold_6G00396920
rosa_rugosa	Rorug03G0220100
rosa_samantha	Rh3BG085100 Rh3BG304200 Rh3CG085300 Rh3CG302500 Rh3DG299100 Rh4CG129700 Rh7DG041000
rosa_wichuraiana	Rw3G023950 Rw3G024060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AasI	GACNNNNNNGTC	1 cut(s)	406
AciI	CCGC	6 cut(s)	69, 72, 75, 78, 124, 379
AclWI	GGATC	2 cut(s)	139, 194
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	65, 154
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	232, 389
AjnI	CCWGG	2 cut(s)	244, 274
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	139, 194
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	3 cut(s)	55, 242, 271
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	3 cut(s)	56, 242, 272
BccI	CCATC	2 cut(s)	167, 458
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	246, 276
BcoDI	GTCTC	1 cut(s)	392
BisI	GCNGC	3 cut(s)	70, 73, 76
BlsI	GCNGC	3 cut(s)	71, 74, 77
Bme1390I	CCNGG	2 cut(s)	246, 276
BmgT120I	GGNCC	3 cut(s)	56, 242, 272
BmiI	GGNNCC	2 cut(s)	58, 202
BmrFI	CCNGG	2 cut(s)	246, 276
BmsI	GCATC	2 cut(s)	101, 135
BpmI	CTGGAG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	6, 148, 274, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 154
Bse1I	ACTGG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	246, 276
BseDI	CCNNGG	4 cut(s)	6, 148, 274, 320
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	2 cut(s)	65, 154
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	4 cut(s)	23, 32, 35, 44
BshFI	GGCC	3 cut(s)	57, 244, 273
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	65, 154
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	57, 244, 273
Bsp143I	GATC	2 cut(s)	144, 186
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	6 cut(s)	69, 72, 75, 78, 124, 379
BspANI	GGCC	3 cut(s)	57, 244, 273
BspLI	GGNNCC	2 cut(s)	58, 202
BspPI	GGATC	2 cut(s)	139, 194
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	4 cut(s)	6, 148, 274, 320
BssMI	GATC	2 cut(s)	144, 186
BssT1I	CCWWGG	2 cut(s)	148, 320
Bst2UI	CCWGG	2 cut(s)	246, 276
Bst4CI	ACNGT	2 cut(s)	310, 446
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	271
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	2 cut(s)	147, 189
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	2 cut(s)	144, 186
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 241, 429
BstNI	CCWGG	2 cut(s)	246, 276
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	244, 274
BsuRI	GGCC	3 cut(s)	57, 244, 273
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	56, 242, 272
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	4 cut(s)	236, 259, 321, 429
CviJI	RGCY	5 cut(s)	57, 222, 244, 263, 273
CviKI_1	RGCY	5 cut(s)	57, 222, 244, 263, 273
CviQI	GTAC	1 cut(s)	279
DpnI	GATC	2 cut(s)	146, 188
DpnII	GATC	2 cut(s)	144, 186
DraIII	CACNNNGTG	1 cut(s)	343
DrdI	GACNNNNNNGTC	1 cut(s)	406
DseDI	GACNNNNNNGTC	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	148, 320
Eco57I	CTGAAG	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	244, 274
EcoT14I	CCWWGG	2 cut(s)	148, 320
ErhI	CCWWGG	2 cut(s)	148, 320
FaeI	CATG	4 cut(s)	239, 262, 324, 432
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	4 cut(s)	235, 258, 320, 428
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	70, 73, 76
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	3 cut(s)	70, 73, 76
GluI	GCNGC	3 cut(s)	70, 73, 76
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	57, 244, 273
Hin1II	CATG	4 cut(s)	239, 262, 324, 432
HinfI	GANTC	4 cut(s)	82, 289, 316, 389
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	350, 412
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	2 cut(s)	41, 44
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	310, 446
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	269, 432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 241, 429
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	4 cut(s)	239, 262, 324, 432
Kzo9I	GATC	2 cut(s)	144, 186
LpnPI	CCDG	6 cut(s)	165, 231, 255, 258, 261, 288
LweI	GCATC	2 cut(s)	101, 135
MaeII	ACGT	1 cut(s)	339
MalI	GATC	2 cut(s)	146, 188
MboI	GATC	2 cut(s)	144, 186
MboII	GAAGA	1 cut(s)	38
MluCI	AATT	2 cut(s)	206, 435
MlyI	GAGTC	3 cut(s)	91, 298, 310
MmeI	TCCRAC	1 cut(s)	306
MseI	TTAA	2 cut(s)	132, 299
MspR9I	CCNGG	2 cut(s)	246, 276
MvaI	CCWGG	2 cut(s)	246, 276
MwoI	GCNNNNNNNGC	3 cut(s)	75, 241, 429
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	144, 186
NlaIII	CATG	4 cut(s)	239, 262, 324, 432
NlaIV	GGNNCC	2 cut(s)	58, 202
NspI	RCATGY	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	71, 74, 77
PleI	GAGTC	3 cut(s)	90, 297, 310
PpsI	GAGTC	3 cut(s)	90, 297, 310
PsiI	TTATAA	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	244, 274
PspGI	CCWGG	2 cut(s)	244, 274
PspN4I	GGNNCC	2 cut(s)	58, 202
PspPI	GGNCC	3 cut(s)	56, 242, 272
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
PstNI	CAGNNNCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	132, 299
SatI	GCNGC	3 cut(s)	70, 73, 76
Sau3AI	GATC	2 cut(s)	144, 186
Sau96I	GGNCC	3 cut(s)	56, 242, 272
SchI	GAGTC	3 cut(s)	91, 298, 310
ScrFI	CCNGG	2 cut(s)	246, 276
SetI	ASST	3 cut(s)	224, 342, 410
SfaNI	GCATC	2 cut(s)	101, 135
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	206, 435
SsiI	CCGC	6 cut(s)	69, 72, 75, 78, 124, 379
StyD4I	CCNGG	2 cut(s)	244, 274
StyI	CCWWGG	2 cut(s)	148, 320
TaaI	ACNGT	2 cut(s)	310, 446
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	85, 334
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	206, 435
TauI	GCSGC	3 cut(s)	72, 75, 78
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	132, 299
Tru9I	TTAA	2 cut(s)	132, 299
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.