Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005159

Physical Location & Seq

Genomic Coordinates Reverse (-)

20363611 .. 20363784

Gene Structure 174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1124600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGTACCAAGGTGGAGATTTTTCAAGAGGTAATGGGATTGGAGGAGAGTCGATTTATGGGGCGAAATTCGCAGATGAGAACTTCGACTTGAAGCATACCGACCCTGGAATATTGTCCATAGCAAATTCTAGACCTAATACTAATGGTTCACAGTTCTTATTTGCACTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

58

Amino Acids

6.13

Weight (kDa)

4.89

Isoelectric Point (pI)

17.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	1 - 56	1.1e-09	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62030 AT3G62030 AT3G62030
fragaria_vesca	FvH4_1g26090
malus_domestica	MD10G1124600.v1.1 MD17G1286000.v1.1
prunus_persica	Prupe.3G001000_v2.0.a1 Prupe.3G001000_v2.0.a1
pyrus_communis	pycom17g28180
rosa_chinensis	RchiOBHm_Chr2g0135271 RchiOBHm_Chr2g0163561 RchiOBHm_Chr3g0485561 RchiOBHm_Chr3g0491891 RchiOBHm_Chr7g0181211
rosa_multiflora	Rmu_sc0001272.1_g000012 Rmu_sc0004711.1_g000017 Rmu_sc0008124.1_g000023 Rmu_sc0011240.1_g000010
rosa_roxburghii	Rroxscaffold_6G00396620 Rroxscaffold_6G00396920
rosa_rugosa	Rorug03G0220100
rosa_samantha	Rh3BG085100 Rh3BG304200 Rh3CG085300 Rh3CG302500 Rh3DG299100 Rh4CG129700 Rh7DG041000
rosa_wichuraiana	Rw3G023950 Rw3G024060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	65, 124
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	24, 91
AjnI	CCWGG	1 cut(s)	103
ApoI	RAATTY	2 cut(s)	65, 124
BciT130I	CCWGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	7, 103
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	7, 103
BseRI	GAGGAG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	7, 103
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	4
CviQI	GTAC	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaiI	YATR	3 cut(s)	57, 96, 119
FspBI	CTAG	1 cut(s)	129
HinfI	GANTC	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	24, 129
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	164, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
LpnPI	CCDG	2 cut(s)	90, 117
MaeI	CTAG	1 cut(s)	129
MluCI	AATT	2 cut(s)	65, 124
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	2 cut(s)	20, 35
MslI	CAYNNNNRTG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	169
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	3 cut(s)	13, 31, 136
SgeI	CNNG	6 cut(s)	20, 36, 100, 116, 117, 141
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	65, 124
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	50, 84
TasI	AATT	2 cut(s)	65, 124
TscAI	CASTG	1 cut(s)	171
TspRI	CASTG	1 cut(s)	171
XapI	RAATTY	2 cut(s)	65, 124
XbaI	TCTAGA	1 cut(s)	128
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.