Rw3G023950

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0005159
Physical Location & Seq
Forward (+)
30502653 .. 30504232
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023950.1

Sequence Viewer

Length: 750 bp
ATGGCATCTGCTGCGACTTCAATCTCGGTGCAATTTCTTCAAACCCAAAAAGGGAGCAATCTTGTTCCTTGTGCTCGTCATGTTCAGCTGAATTCCAAAGCTTTCTTTGGTGGGAGGTTGCAGACCGCGACTGGTGTGTTATGCAAACGCAGGCCTCGCTGCGCATCGGTTTCTGTGAAGCCTCGGACAATGGTGTGCGTCAACTCTAGAGCAAATGAGGTAGAGGAGCAGCTGCAAGCCAAAGTCACAACAAAGTGCTTTTTTGATATAGACATTGGCGGTGAAGCTGTTGGTCGGGTTGTGATTGGTCTTTTTGGTGAGGTTGTTCCTAAAACAGTAGAGAATTTCCGAGCTCTGTGCACAGGAGAGAAAGGATATGGTTATAAAGGATGCTCTTTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACTGGAGGGATCAGTATCTATGGTTCCAAATTTGAAGATGAGAGCTTTGCTTTGAAGCATGTTGGGCCTGGTGTATTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGTCAGTTTTTTATCTGCACAGTAAAGACTCCATGGTTGGACAATCGACACGTTGTGTTCGGACATATACTTGAGGGAATGGATGTTGTGCGGAAACTTGAATCCCAAGAGACAAGTAGGTCAGATGTCCCTCGCTTACCATGCAGAATTGTAAACTGTGGAGAGTTGGTTATTGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

249

Amino Acids

26.94

Weight (kDa)

8.68

Isoelectric Point (pI)

28.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 88 - 243 4.8e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AasI GACNNNNNNGTC 1 cut(s) 685
Acc16I TGCGCA 1 cut(s) 163
AccII CGCG 1 cut(s) 128
AciI CCGC 4 cut(s) 126, 279, 403, 658
AclWI GGATC 2 cut(s) 418, 473
AcsI RAATTY 3 cut(s) 91, 343, 485
AcuI CTGAAG 1 cut(s) 465
AdeI CACNNNGTG 1 cut(s) 622
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 2 cut(s) 51, 433
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 5 cut(s) 21, 41, 491, 511, 668
AjnI CCWGG 2 cut(s) 523, 553
AluBI AGCT 6 cut(s) 88, 101, 232, 287, 353, 501
AluI AGCT 6 cut(s) 88, 101, 232, 287, 353, 501
Alw21I GWGCWC 3 cut(s) 76, 355, 362
Alw26I GTCTC 1 cut(s) 671
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 2 cut(s) 418, 473
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 3 cut(s) 152, 521, 550
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 4 cut(s) 11, 159, 229, 232
ApoI RAATTY 3 cut(s) 91, 343, 485
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 521, 551
AsuHPI GGTGA 2 cut(s) 293, 329
BaeGI GKGCMC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 355
Bbv12I GWGCWC 3 cut(s) 76, 355, 362
BbvI GCAGC 3 cut(s) 146, 219, 241
BccI CCATC 2 cut(s) 446, 737
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BciT130I CCWGG 2 cut(s) 525, 555
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 1 cut(s) 207
BisI GCNGC 4 cut(s) 12, 160, 230, 233
BlsI GCNGC 4 cut(s) 13, 161, 231, 234
Bme1390I CCNGG 2 cut(s) 525, 555
BmgT120I GGNCC 2 cut(s) 521, 551
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 2 cut(s) 525, 555
BmsI GCATC 4 cut(s) 14, 173, 380, 414
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 182, 427, 553, 599
BsaXI ACNNNNNCTCC 2 cut(s) 720, 750
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 433
Bse1I ACTGG 2 cut(s) 136, 463
Bse8I GATNNNNATC 1 cut(s) 470
BseBI CCWGG 2 cut(s) 525, 555
BseDI CCNNGG 4 cut(s) 182, 427, 553, 599
BseGI GGATG 2 cut(s) 395, 655
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 51, 433
BseNI ACTGG 2 cut(s) 136, 463
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 3 cut(s) 146, 219, 241
BsgI GTGCAG 1 cut(s) 568
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 154, 523, 552
BsiHKAI GWGCWC 3 cut(s) 76, 355, 362
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 2 cut(s) 51, 433
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 680
BsnI GGCC 3 cut(s) 154, 523, 552
Bsp1286I GDGCHC 3 cut(s) 76, 355, 362
Bsp143I GATC 2 cut(s) 423, 465
Bsp19I CCATGG 1 cut(s) 599
BspACI CCGC 4 cut(s) 126, 279, 403, 658
BspANI GGCC 3 cut(s) 154, 523, 552
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 481
BspPI GGATC 2 cut(s) 418, 473
BsrI ACTGG 2 cut(s) 136, 463
BssECI CCNNGG 4 cut(s) 182, 427, 553, 599
BssMI GATC 2 cut(s) 423, 465
BssT1I CCWWGG 2 cut(s) 427, 599
Bst2UI CCWGG 2 cut(s) 525, 555
Bst4CI ACNGT 3 cut(s) 337, 589, 725
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 152, 237, 550
BstDSI CCRYGG 1 cut(s) 599
BstF5I GGATG 2 cut(s) 395, 655
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 426, 468
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 2 cut(s) 423, 465
BstMWI GCNNNNNNNGC 4 cut(s) 11, 156, 520, 708
BstNI CCWGG 2 cut(s) 525, 555
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 2 cut(s) 523, 553
BstSLI GKGCMC 1 cut(s) 362
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 146, 219, 241
BsuRI GGCC 3 cut(s) 154, 523, 552
BtgI CCRYGG 1 cut(s) 599
BtsCI GGATG 2 cut(s) 395, 655
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 152, 237, 550
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 521, 551
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 558
CviAII CATG 5 cut(s) 80, 515, 538, 600, 708
CviQI GTAC 1 cut(s) 558
DpnI GATC 2 cut(s) 425, 467
DpnII GATC 2 cut(s) 423, 465
DraIII CACNNNGTG 1 cut(s) 622
DrdI GACNNNNNNGTC 1 cut(s) 685
DseDI GACNNNNNNGTC 1 cut(s) 685
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 427, 599
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 551
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 523, 553
EcoT14I CCWWGG 2 cut(s) 427, 599
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 2 cut(s) 427, 599
FaeI CATG 5 cut(s) 83, 518, 541, 603, 711
FaqI GGGAC 1 cut(s) 680
FatI CATG 5 cut(s) 79, 514, 537, 599, 707
Fnu4HI GCNGC 4 cut(s) 12, 160, 230, 233
FokI GGATG 2 cut(s) 402, 662
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 4 cut(s) 12, 160, 230, 233
FspBI CTAG 1 cut(s) 207
FspI TGCGCA 1 cut(s) 163
GlaI GCGC 1 cut(s) 163
GluI GCNGC 4 cut(s) 12, 160, 230, 233
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 3 cut(s) 154, 523, 552
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 164
Hin1II CATG 5 cut(s) 83, 518, 541, 603, 711
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 3 cut(s) 568, 595, 668
HphI GGTGA 2 cut(s) 293, 329
Hpy166II GTNNAC 3 cut(s) 202, 360, 721
Hpy188I TCNGA 4 cut(s) 186, 350, 629, 691
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 3 cut(s) 202, 360, 721
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 3 cut(s) 337, 589, 725
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 8 cut(s) 31, 121, 144, 235, 360, 548, 585, 711
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 156, 520, 708
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 5 cut(s) 83, 518, 541, 603, 711
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 423, 465
LmnI GCTCC 2 cut(s) 54, 226
LpnPI CCDG 9 cut(s) 117, 136, 348, 444, 510, 534, 537, 540, 567
Lsp1109I GCAGC 3 cut(s) 146, 219, 241
LweI GCATC 4 cut(s) 14, 173, 380, 414
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 425, 467
MboI GATC 2 cut(s) 423, 465
MboII GAAGA 2 cut(s) 29, 503
MhlI GDGCHC 3 cut(s) 76, 355, 362
MluCI AATT 5 cut(s) 32, 91, 343, 485, 714
MlyI GAGTC 2 cut(s) 577, 589
MmeI TCCRAC 1 cut(s) 585
MseI TTAA 1 cut(s) 411
MspA1I CMGCKG 2 cut(s) 88, 232
MspR9I CCNGG 2 cut(s) 525, 555
MvaI CCWGG 2 cut(s) 525, 555
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 4 cut(s) 11, 156, 520, 708
NcoI CCATGG 1 cut(s) 599
NdeII GATC 2 cut(s) 423, 465
NlaIII CATG 5 cut(s) 83, 518, 541, 603, 711
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 244
NsbI TGCGCA 1 cut(s) 163
NspI RCATGY 1 cut(s) 518
PceI AGGCCT 1 cut(s) 154
PfeI GAWTC 1 cut(s) 668
PkrI GCNGC 4 cut(s) 13, 161, 231, 234
PleI GAGTC 2 cut(s) 576, 589
PpsI GAGTC 2 cut(s) 576, 589
PsiI TTATAA 1 cut(s) 384
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 2 cut(s) 523, 553
PspGI CCWGG 2 cut(s) 523, 553
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 2 cut(s) 521, 551
PsrI GAACNNNNNNTAC 2 cut(s) 463, 495
PstNI CAGNNNCTG 1 cut(s) 554
PvuII CAGCTG 2 cut(s) 88, 232
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 4 cut(s) 12, 160, 230, 233
Sau3AI GATC 2 cut(s) 423, 465
Sau96I GGNCC 2 cut(s) 521, 551
SchI GAGTC 2 cut(s) 577, 589
ScrFI CCNGG 2 cut(s) 525, 555
SduI GDGCHC 3 cut(s) 76, 355, 362
SfaNI GCATC 4 cut(s) 14, 173, 380, 414
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 5 cut(s) 32, 91, 343, 485, 714
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 4 cut(s) 126, 279, 403, 658
SspMI CTAG 1 cut(s) 207
SstI GAGCTC 1 cut(s) 355
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 2 cut(s) 523, 553
StyI CCWWGG 2 cut(s) 427, 599
TaaI ACNGT 3 cut(s) 337, 589, 725
TaiI ACGT 1 cut(s) 621
TaqI TCGA 1 cut(s) 613
TasI AATT 5 cut(s) 32, 91, 343, 485, 714
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 4 cut(s) 11, 159, 229, 232
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 1 cut(s) 448
VneI GTGCAC 1 cut(s) 358
XapI RAATTY 3 cut(s) 91, 343, 485
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 518
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.