Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005159

Physical Location & Seq

Genomic Coordinates Reverse (-)

30623935 .. 30633019

Gene Structure 9085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G024060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACTGGAGGGATCAGTATCTATGGTTCCAAATTTGATGATGAGAGCTTTGCTTTGAAGCATGTTGGGCCTGGTGTATTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGTCAGTTTTTAATCGGCACAGTAAAGGAAAATGTGAAGACAAATCCTCAATTGCTGTATGAATCCAAGTTGTATAGGATCCTACAAGGAGGAAAGTTTTACACTATTGGTTTCAATGGCTTACAAGTTTTTGCTGCCAGGTTGACTGATCAGCAAGCTTTCCAAATTTCAAGAATTTGGCCTGAATCTCCAAGTTTTAATGATGACAACATGCCTCCAGTGCCAGCTAGATGGAAGGGGGTTTGTCAATCAGGAGAGGCATTCAATGCTTCAACTTGCAACAGAAAAGTGATTGGGGCTACTATAAGTCCGGTTATGAAGCCGAGGAAGATTCAGCGGACACAGTGGCATTCAGTTCTCCAAGGGACAGTGCCGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGCTAAGCCTGTTGTTTACTTGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGTCATCAGCTCTTTGTTTCTCTGAATCCAACGAAGCCTGGGAAGGTGCAGGTAGCAGAGAGCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

265

Amino Acids

29.11

Weight (kDa)

8.55

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	1 - 63	3.6e-10	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YchF-GTPase_C	PF06071	213 - 243	7.6e-11	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62030 AT3G62030 AT3G62030
fragaria_vesca	FvH4_1g26090
malus_domestica	MD10G1124600.v1.1 MD17G1286000.v1.1
prunus_persica	Prupe.3G001000_v2.0.a1 Prupe.3G001000_v2.0.a1
pyrus_communis	pycom17g28180
rosa_chinensis	RchiOBHm_Chr2g0135271 RchiOBHm_Chr2g0163561 RchiOBHm_Chr3g0485561 RchiOBHm_Chr3g0491891 RchiOBHm_Chr7g0181211
rosa_multiflora	Rmu_sc0001272.1_g000012 Rmu_sc0004711.1_g000017 Rmu_sc0008124.1_g000023 Rmu_sc0011240.1_g000010
rosa_roxburghii	Rroxscaffold_6G00396620 Rroxscaffold_6G00396920
rosa_rugosa	Rorug03G0220100
rosa_samantha	Rh3BG085100 Rh3BG304200 Rh3CG085300 Rh3CG302500 Rh3DG299100 Rh4CG129700 Rh7DG041000
rosa_wichuraiana	Rw3G023950 Rw3G024060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	767
AccBSI	CCGCTC	1 cut(s)	523
AciI	CCGC	3 cut(s)	484, 521, 658
AclWI	GGATC	4 cut(s)	53, 220, 233, 583
AcsI	RAATTY	3 cut(s)	65, 312, 321
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	13, 562
AgsI	TTSAA	7 cut(s)	91, 262, 318, 412, 420, 605, 666
AjnI	CCWGG	4 cut(s)	103, 133, 284, 764
AluBI	AGCT	7 cut(s)	81, 305, 374, 575, 617, 680, 737
AluI	AGCT	7 cut(s)	81, 305, 374, 575, 617, 680, 737
AlwI	GGATC	4 cut(s)	53, 220, 233, 583
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	3 cut(s)	101, 130, 326
ApeKI	GCWGC	3 cut(s)	281, 575, 680
ApoI	RAATTY	3 cut(s)	65, 312, 321
AspS9I	GGNCC	3 cut(s)	101, 131, 687
AsuHPI	GGTGA	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	268, 562, 667
BccI	CCATC	4 cut(s)	26, 372, 536, 698
BciT130I	CCWGG	4 cut(s)	105, 135, 286, 766
BclI	TGATCA	1 cut(s)	295
BfaI	CTAG	2 cut(s)	375, 560
BfmI	CTRYAG	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	767
BisI	GCNGC	5 cut(s)	282, 521, 576, 659, 681
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	5 cut(s)	283, 522, 577, 660, 682
Bme1390I	CCNGG	4 cut(s)	105, 135, 286, 766
Bme18I	GGWCC	1 cut(s)	687
BmgT120I	GGNCC	3 cut(s)	101, 131, 687
BmiI	GGNNCC	4 cut(s)	61, 227, 672, 688
BmrFI	CCNGG	4 cut(s)	105, 135, 286, 766
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	2 cut(s)	60, 348
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	3 cut(s)	509, 557, 660
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	5 cut(s)	7, 133, 470, 508, 765
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 562
Bse1I	ACTGG	3 cut(s)	43, 365, 572
Bse8I	GATNNNNATC	1 cut(s)	50
BseBI	CCWGG	4 cut(s)	105, 135, 286, 766
BseDI	CCNNGG	5 cut(s)	7, 133, 470, 508, 765
BseGI	GGATG	2 cut(s)	547, 690
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	13, 562
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	3 cut(s)	43, 365, 572
BseRI	GAGGAG	1 cut(s)	663
BseXI	GCAGC	3 cut(s)	268, 562, 667
BsgI	GTGCAG	1 cut(s)	795
BshFI	GGCC	3 cut(s)	103, 132, 328
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	3 cut(s)	526, 578, 700
BslI	CCNNNNNNNGG	2 cut(s)	13, 562
BsmFI	GGGAC	3 cut(s)	526, 578, 700
BsmI	GAATGC	2 cut(s)	407, 496
BsnI	GGCC	3 cut(s)	103, 132, 328
Bsp143I	GATC	5 cut(s)	3, 45, 225, 295, 588
Bsp1720I	GCTNAGC	1 cut(s)	618
BspACI	CCGC	3 cut(s)	484, 521, 658
BspANI	GGCC	3 cut(s)	103, 132, 328
BspCNI	CTCAG	1 cut(s)	718
BspLI	GGNNCC	4 cut(s)	61, 227, 672, 688
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	4 cut(s)	53, 220, 233, 583
BsrBI	CCGCTC	1 cut(s)	523
BsrI	ACTGG	3 cut(s)	43, 365, 572
BssECI	CCNNGG	5 cut(s)	7, 133, 470, 508, 765
BssMI	GATC	5 cut(s)	3, 45, 225, 295, 588
BssT1I	CCWWGG	2 cut(s)	7, 508
Bst2UI	CCWGG	4 cut(s)	105, 135, 286, 766
Bst4CI	ACNGT	3 cut(s)	169, 492, 517
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	4 cut(s)	130, 303, 372, 647
BstDEI	CTNAG	2 cut(s)	618, 726
BstF5I	GGATG	2 cut(s)	547, 690
BstKTI	GATC	5 cut(s)	6, 48, 228, 298, 591
BstMBI	GATC	5 cut(s)	3, 45, 225, 295, 588
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 367, 413, 655, 677
BstNI	CCWGG	4 cut(s)	105, 135, 286, 766
BstNSI	RCATGY	2 cut(s)	98, 361
BstSCI	CCNGG	4 cut(s)	103, 133, 284, 764
BstSFI	CTRYAG	1 cut(s)	681
BstV1I	GCAGC	3 cut(s)	268, 562, 667
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	2 cut(s)	225, 588
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	2 cut(s)	225, 588
BsuRI	GGCC	3 cut(s)	103, 132, 328
BtsCI	GGATG	2 cut(s)	547, 690
BtsIMutI	CAGTG	4 cut(s)	21, 372, 497, 522
BveI	ACCTGC	1 cut(s)	767
Cac8I	GCNNGC	4 cut(s)	130, 303, 372, 647
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	101, 131, 687
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	4 cut(s)	95, 118, 358, 531
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	618, 726
DpnI	GATC	5 cut(s)	5, 47, 227, 297, 590
DpnII	GATC	5 cut(s)	3, 45, 225, 295, 588
Eco130I	CCWWGG	2 cut(s)	7, 508
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	687
Eco57I	CTGAAG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	4 cut(s)	103, 133, 284, 764
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	7, 508
ErhI	CCWWGG	2 cut(s)	7, 508
FaeI	CATG	4 cut(s)	98, 121, 361, 534
FaqI	GGGAC	3 cut(s)	526, 578, 700
FatI	CATG	4 cut(s)	94, 117, 357, 530
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	5 cut(s)	282, 521, 576, 659, 681
FokI	GGATG	2 cut(s)	554, 677
Fsp4HI	GCNGC	5 cut(s)	282, 521, 576, 659, 681
FspBI	CTAG	2 cut(s)	375, 560
GluI	GCNGC	5 cut(s)	282, 521, 576, 659, 681
GsuI	CTGGAG	2 cut(s)	60, 348
HaeIII	GGCC	3 cut(s)	103, 132, 328
HapII	CCGG	1 cut(s)	458
Hin1II	CATG	4 cut(s)	98, 121, 361, 534
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	7 cut(s)	148, 209, 332, 478, 714, 728, 752
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	2 cut(s)	291, 631
Hpy188I	TCNGA	1 cut(s)	751
Hpy188III	TCNNGA	4 cut(s)	318, 399, 586, 592
Hpy8I	GTNNAC	2 cut(s)	291, 631
HpyAV	CCTTC	3 cut(s)	20, 376, 764
HpyCH4III	ACNGT	3 cut(s)	169, 492, 517
HpyCH4V	TGCA	4 cut(s)	128, 426, 683, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 367, 413, 655, 677
HpyF3I	CTNAG	2 cut(s)	618, 726
Hsp92II	CATG	4 cut(s)	98, 121, 361, 534
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	3, 45, 225, 295, 588
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	3 cut(s)	268, 562, 667
MaeI	CTAG	2 cut(s)	375, 560
MalI	GATC	5 cut(s)	5, 47, 227, 297, 590
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	5 cut(s)	3, 45, 225, 295, 588
MboII	GAAGA	2 cut(s)	196, 487
MfeI	CAATTG	2 cut(s)	197, 605
MflI	RGATCY	2 cut(s)	225, 588
MluCI	AATT	6 cut(s)	65, 197, 312, 321, 605, 651
MlyI	GAGTC	2 cut(s)	157, 737
MmeI	TCCRAC	1 cut(s)	780
MseI	TTAA	2 cut(s)	158, 345
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	4 cut(s)	105, 135, 286, 766
MunI	CAATTG	2 cut(s)	197, 605
Mva1269I	GAATGC	2 cut(s)	407, 496
MvaI	CCWGG	4 cut(s)	105, 135, 286, 766
MwoI	GCNNNNNNNGC	5 cut(s)	100, 367, 413, 655, 677
NdeII	GATC	5 cut(s)	3, 45, 225, 295, 588
NlaIII	CATG	4 cut(s)	98, 121, 361, 534
NlaIV	GGNNCC	4 cut(s)	61, 227, 672, 688
NmeAIII	GCCGAG	1 cut(s)	495
NspI	RCATGY	2 cut(s)	98, 361
PctI	GAATGC	2 cut(s)	407, 496
PfeI	GAWTC	5 cut(s)	209, 332, 478, 714, 752
PkrI	GCNGC	5 cut(s)	283, 522, 577, 660, 682
PleI	GAGTC	2 cut(s)	156, 736
PpsI	GAGTC	2 cut(s)	156, 736
Psp6I	CCWGG	4 cut(s)	103, 133, 284, 764
PspGI	CCWGG	4 cut(s)	103, 133, 284, 764
PspN4I	GGNNCC	4 cut(s)	61, 227, 672, 688
PspPI	GGNCC	3 cut(s)	101, 131, 687
PsrI	GAACNNNNNNTAC	2 cut(s)	43, 75
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	225, 588
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	158, 345
SatI	GCNGC	5 cut(s)	282, 521, 576, 659, 681
Sau3AI	GATC	5 cut(s)	3, 45, 225, 295, 588
Sau96I	GGNCC	3 cut(s)	101, 131, 687
SchI	GAGTC	2 cut(s)	157, 737
ScrFI	CCNGG	4 cut(s)	105, 135, 286, 766
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	1 cut(s)	687
SmlI	CTYRAG	3 cut(s)	524, 536, 675
SmoI	CTYRAG	3 cut(s)	524, 536, 675
Sse9I	AATT	6 cut(s)	65, 197, 312, 321, 605, 651
SsiI	CCGC	3 cut(s)	484, 521, 658
SspMI	CTAG	2 cut(s)	375, 560
StyD4I	CCNGG	4 cut(s)	103, 133, 284, 764
StyI	CCWWGG	2 cut(s)	7, 508
TaaI	ACNGT	3 cut(s)	169, 492, 517
TaqI	TCGA	1 cut(s)	585
TasI	AATT	6 cut(s)	65, 197, 312, 321, 605, 651
TauI	GCSGC	2 cut(s)	523, 661
TfiI	GAWTC	5 cut(s)	209, 332, 478, 714, 752
Tru1I	TTAA	2 cut(s)	158, 345
Tru9I	TTAA	2 cut(s)	158, 345
TscAI	CASTG	4 cut(s)	28, 372, 497, 522
TseI	GCWGC	3 cut(s)	281, 575, 680
TspDTI	ATGAA	3 cut(s)	222, 479, 706
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	4 cut(s)	28, 372, 497, 522
VpaK11BI	GGWCC	1 cut(s)	687
XapI	RAATTY	3 cut(s)	65, 312, 321
XceI	RCATGY	2 cut(s)	98, 361
XspI	CTAG	2 cut(s)	375, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.