Rroxscaffold_6G00396920

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005159
Physical Location & Seq
Reverse (-)
18491754 .. 18493787
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396920.1

Sequence Viewer

Length: 705 bp
ATGGCATCTGCTGCGACTTCAATCTCGGTGCAATTTCTTCAAACCCAAAAAGGGAGCAATCTTGTTCCTTGTGCTCGTCATGTTCGGGTGAATTCCAAAGCTTTCTTTGGTGGGAGGTTGCAGACCACGACTGGTACTGTGTTATGCAAACGCAGGCCTCGCTGCGCATCGGTTTCTGTGAAGCCTCGGACAATGGTGTGCGTTAACTCTATAGCAAATGAGGTAGAGGAGCAGCTGCAAGCCAAAGTCACAACAAAGTGCTTCTTTGATATAGACATTGGCGGTGAAGCTGTTGGTCGGGTTGTGATTGGTCTTTTTGGAGAGAAAGGATATGGTTATAAAGGATGCTCATTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACTGGAGGGATCAGTATCTATGGTTCCAAATTTGAAGATGAGAGCTTTGCTTTGAAGCATGTTGGGCCTGGTGTATTGAGCATGGCTAATGCAGGCCCTGGTACAAATGGGAGTCAGTTTTTTATCTGCACAGTAAAGACTCCATGGTTGGACAATCGACACGTTGTGTTCGGACATATAATTGAGGGAATGGATGTTGTGCGGAAACTTGAATCCCAAGAGACAAGTAGGTCAGATGTCCCTCGCTTGCCATGCAGAATTGTAAACTGTGGAGAGTTGGTTATTGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

234

Amino Acids

25.3

Weight (kDa)

8.74

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 112 - 228 6.7e-39 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AasI GACNNNNNNGTC 1 cut(s) 640
Acc16I TGCGCA 1 cut(s) 166
AciI CCGC 3 cut(s) 282, 358, 613
AclWI GGATC 2 cut(s) 373, 428
AcsI RAATTY 2 cut(s) 91, 440
AcuI CTGAAG 1 cut(s) 420
AdeI CACNNNGTG 1 cut(s) 577
AfaI GTAC 2 cut(s) 136, 514
AfiI CCNNNNNNNGG 2 cut(s) 51, 388
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 5 cut(s) 21, 41, 446, 466, 623
AjnI CCWGG 2 cut(s) 478, 508
AluBI AGCT 4 cut(s) 101, 235, 290, 456
AluI AGCT 4 cut(s) 101, 235, 290, 456
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 2 cut(s) 373, 428
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 3 cut(s) 155, 476, 505
ApeKI GCWGC 4 cut(s) 11, 162, 232, 235
ApoI RAATTY 2 cut(s) 91, 440
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 476, 506
AsuHPI GGTGA 2 cut(s) 100, 296
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 149, 222, 244
BccI CCATC 2 cut(s) 401, 692
BciT130I CCWGG 2 cut(s) 480, 510
BcoDI GTCTC 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 4 cut(s) 12, 163, 233, 236
BlsI GCNGC 4 cut(s) 13, 164, 234, 237
Bme1390I CCNGG 2 cut(s) 480, 510
BmgT120I GGNCC 2 cut(s) 476, 506
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 480, 510
BmsI GCATC 4 cut(s) 14, 176, 335, 369
BpmI CTGGAG 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 425
BsaJI CCNNGG 4 cut(s) 185, 382, 508, 554
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 388
Bse1I ACTGG 2 cut(s) 136, 418
Bse8I GATNNNNATC 1 cut(s) 425
BseBI CCWGG 2 cut(s) 480, 510
BseDI CCNNGG 4 cut(s) 185, 382, 508, 554
BseGI GGATG 2 cut(s) 350, 610
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 51, 388
BseNI ACTGG 2 cut(s) 136, 418
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 3 cut(s) 149, 222, 244
BsgI GTGCAG 1 cut(s) 523
BshFI GGCC 3 cut(s) 157, 478, 507
BsiHKAI GWGCWC 1 cut(s) 76
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 51, 388
BsmAI GTCTC 1 cut(s) 626
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 3 cut(s) 157, 478, 507
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 2 cut(s) 378, 420
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 3 cut(s) 282, 358, 613
BspANI GGCC 3 cut(s) 157, 478, 507
BspLI GGNNCC 1 cut(s) 436
BspPI GGATC 2 cut(s) 373, 428
BsrI ACTGG 2 cut(s) 136, 418
BssECI CCNNGG 4 cut(s) 185, 382, 508, 554
BssMI GATC 2 cut(s) 378, 420
BssT1I CCWWGG 2 cut(s) 382, 554
Bst2UI CCWGG 2 cut(s) 480, 510
Bst4CI ACNGT 3 cut(s) 139, 544, 680
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 155, 240, 505, 659
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 2 cut(s) 350, 610
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 2 cut(s) 381, 423
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 2 cut(s) 378, 420
BstMWI GCNNNNNNNGC 4 cut(s) 11, 159, 475, 663
BstNI CCWGG 2 cut(s) 480, 510
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 478, 508
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 149, 222, 244
BsuRI GGCC 3 cut(s) 157, 478, 507
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 2 cut(s) 350, 610
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 4 cut(s) 155, 240, 505, 659
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 476, 506
Csp6I GTAC 2 cut(s) 135, 513
CviAII CATG 5 cut(s) 80, 470, 493, 555, 663
CviQI GTAC 2 cut(s) 135, 513
DpnI GATC 2 cut(s) 380, 422
DpnII GATC 2 cut(s) 378, 420
DraIII CACNNNGTG 1 cut(s) 577
DrdI GACNNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 640
Eco130I CCWWGG 2 cut(s) 382, 554
Eco147I AGGCCT 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 478, 508
EcoT14I CCWWGG 2 cut(s) 382, 554
ErhI CCWWGG 2 cut(s) 382, 554
FaeI CATG 5 cut(s) 83, 473, 496, 558, 666
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 635
FatI CATG 5 cut(s) 79, 469, 492, 554, 662
Fnu4HI GCNGC 4 cut(s) 12, 163, 233, 236
FokI GGATG 2 cut(s) 357, 617
Fsp4HI GCNGC 4 cut(s) 12, 163, 233, 236
FspI TGCGCA 1 cut(s) 166
GlaI GCGC 1 cut(s) 166
GluI GCNGC 4 cut(s) 12, 163, 233, 236
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 3 cut(s) 157, 478, 507
HhaI GCGC 1 cut(s) 167
Hin1II CATG 5 cut(s) 83, 473, 496, 558, 666
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 3 cut(s) 523, 550, 623
HpaI GTTAAC 1 cut(s) 205
HphI GGTGA 2 cut(s) 100, 296
Hpy166II GTNNAC 2 cut(s) 205, 676
Hpy188I TCNGA 3 cut(s) 189, 584, 646
Hpy8I GTNNAC 2 cut(s) 205, 676
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 3 cut(s) 139, 544, 680
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 7 cut(s) 31, 121, 147, 238, 503, 540, 666
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 159, 475, 663
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 5 cut(s) 83, 473, 496, 558, 666
HspAI GCGC 1 cut(s) 165
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 378, 420
LmnI GCTCC 2 cut(s) 54, 229
LpnPI CCDG 8 cut(s) 117, 139, 399, 465, 489, 492, 495, 522
Lsp1109I GCAGC 3 cut(s) 149, 222, 244
LweI GCATC 4 cut(s) 14, 176, 335, 369
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 380, 422
MboI GATC 2 cut(s) 378, 420
MboII GAAGA 2 cut(s) 29, 458
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 5 cut(s) 32, 91, 440, 591, 669
MlyI GAGTC 2 cut(s) 532, 544
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 9 cut(s) 108, 168, 195, 214, 220, 380, 410, 589, 663
MseI TTAA 2 cut(s) 204, 366
MspA1I CMGCKG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 480, 510
MvaI CCWGG 2 cut(s) 480, 510
MwoI GCNNNNNNNGC 4 cut(s) 11, 159, 475, 663
NcoI CCATGG 1 cut(s) 554
NdeII GATC 2 cut(s) 378, 420
NlaIII CATG 5 cut(s) 83, 473, 496, 558, 666
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 1 cut(s) 247
NsbI TGCGCA 1 cut(s) 166
NspI RCATGY 1 cut(s) 473
PceI AGGCCT 1 cut(s) 157
PfeI GAWTC 1 cut(s) 623
PkrI GCNGC 4 cut(s) 13, 164, 234, 237
PleI GAGTC 2 cut(s) 531, 544
PpsI GAGTC 2 cut(s) 531, 544
PsiI TTATAA 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 478, 508
PspGI CCWGG 2 cut(s) 478, 508
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 2 cut(s) 476, 506
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstNI CAGNNNCTG 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 2 cut(s) 136, 514
RsaNI GTAC 2 cut(s) 135, 513
SaqAI TTAA 2 cut(s) 204, 366
SatI GCNGC 4 cut(s) 12, 163, 233, 236
Sau3AI GATC 2 cut(s) 378, 420
Sau96I GGNCC 2 cut(s) 476, 506
SchI GAGTC 2 cut(s) 532, 544
ScrFI CCNGG 2 cut(s) 480, 510
SduI GDGCHC 1 cut(s) 76
SetI ASST 8 cut(s) 103, 119, 225, 237, 292, 458, 576, 644
SfaNI GCATC 4 cut(s) 14, 176, 335, 369
SfcI CTRYAG 1 cut(s) 210
Sse9I AATT 5 cut(s) 32, 91, 440, 591, 669
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 3 cut(s) 282, 358, 613
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 478, 508
StyI CCWWGG 2 cut(s) 382, 554
TaaI ACNGT 3 cut(s) 139, 544, 680
TaiI ACGT 1 cut(s) 576
TaqI TCGA 1 cut(s) 568
TasI AATT 5 cut(s) 32, 91, 440, 591, 669
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 2 cut(s) 204, 366
Tru9I TTAA 2 cut(s) 204, 366
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 4 cut(s) 11, 162, 232, 235
Tsp45I GTSAC 1 cut(s) 247
TspRI CASTG 1 cut(s) 403
XapI RAATTY 2 cut(s) 91, 440
XceI RCATGY 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.