RchiOBHm_Chr2g0135271

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005159
Physical Location & Seq
Forward (+)
52332114 .. 52335253
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50621

Sequence Viewer

Length: 441 bp
ATGCAGCTGCAATCCAAAGTCACAACAAAGTTTTTTTTTGATATAGACATTGGCGGTGAAGCTGTTGGTCGAGTTGTGATTGGTCTTTTTGGTGAGGTTGTTCCTAAAACAGTAGAGAATTTCCGAGCTCTGTGCACAGGAGAGAAAGGATATGGTTATAAAAGATGCTCGTTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACTGGAGGGATCAGTATCTATGGTTCCAAATTTGATGATGAGAGCTTTGCTTTGAAGCATGTTGGGCCTGGTGTATTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGTCAGTTTTTAATCGGCACAGTAAAGGAAAATGTGAAGACAAATCCTCAATTGCTGTATGAATCCAAGTTGTATAGGATCCTACAAGGAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

146

Amino Acids

15.8

Weight (kDa)

7.74

Isoelectric Point (pI)

16.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 13 - 128 5.9e-30 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AciI CCGC 2 cut(s) 54, 178
AclWI GGATC 4 cut(s) 193, 248, 415, 428
AcsI RAATTY 2 cut(s) 118, 260
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 2 cut(s) 298, 328
AluBI AGCT 4 cut(s) 7, 62, 128, 276
AluI AGCT 4 cut(s) 7, 62, 128, 276
Alw21I GWGCWC 2 cut(s) 130, 137
Alw44I GTGCAC 1 cut(s) 133
AlwI GGATC 4 cut(s) 193, 248, 415, 428
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 296, 325
ApaLI GTGCAC 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 4, 7
ApoI RAATTY 2 cut(s) 118, 260
AspS9I GGNCC 2 cut(s) 296, 326
AsuHPI GGTGA 2 cut(s) 68, 104
BaeGI GKGCMC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 2 cut(s) 130, 137
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BciT130I CCWGG 2 cut(s) 300, 330
BisI GCNGC 2 cut(s) 5, 8
BlsI GCNGC 2 cut(s) 6, 9
Bme1390I CCNGG 2 cut(s) 300, 330
BmgT120I GGNCC 2 cut(s) 296, 326
BmiI GGNNCC 2 cut(s) 256, 422
BmrFI CCNGG 2 cut(s) 300, 330
BmsI GCATC 2 cut(s) 155, 189
BpiI GAAGAC 1 cut(s) 386
BpmI CTGGAG 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 202, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 2 cut(s) 300, 330
BseDI CCNNGG 2 cut(s) 202, 328
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 298, 327
BsiHKAI GWGCWC 2 cut(s) 130, 137
BslI CCNNNNNNNGG 1 cut(s) 208
BsnI GGCC 2 cut(s) 298, 327
Bsp1286I GDGCHC 2 cut(s) 130, 137
Bsp143I GATC 3 cut(s) 198, 240, 420
BspACI CCGC 2 cut(s) 54, 178
BspANI GGCC 2 cut(s) 298, 327
BspLI GGNNCC 2 cut(s) 256, 422
BspPI GGATC 4 cut(s) 193, 248, 415, 428
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 202, 328
BssMI GATC 3 cut(s) 198, 240, 420
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 300, 330
Bst4CI ACNGT 2 cut(s) 112, 364
BstC8I GCNNGC 1 cut(s) 325
BstKTI GATC 3 cut(s) 201, 243, 423
BstMBI GATC 3 cut(s) 198, 240, 420
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 2 cut(s) 300, 330
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 298, 328
BstSLI GKGCMC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BsuRI GGCC 2 cut(s) 298, 327
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 325
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 296, 326
Csp6I GTAC 1 cut(s) 333
CviAII CATG 2 cut(s) 290, 313
CviJI RGCY 7 cut(s) 7, 62, 128, 276, 298, 317, 327
CviKI_1 RGCY 7 cut(s) 7, 62, 128, 276, 298, 317, 327
CviQI GTAC 1 cut(s) 333
DpnI GATC 3 cut(s) 200, 242, 422
DpnII GATC 3 cut(s) 198, 240, 420
Ecl136II GAGCTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 298, 328
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 293, 316
FaiI YATR 9 cut(s) 44, 153, 159, 197, 252, 291, 314, 402, 417
FatI CATG 2 cut(s) 289, 312
Fnu4HI GCNGC 2 cut(s) 5, 8
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 5, 8
GluI GCNGC 2 cut(s) 5, 8
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 298, 327
Hin1II CATG 2 cut(s) 293, 316
HinfI GANTC 2 cut(s) 343, 404
HphI GGTGA 2 cut(s) 68, 104
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 2 cut(s) 112, 364
HpyCH4V TGCA 4 cut(s) 4, 10, 135, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
Hsp92II CATG 2 cut(s) 293, 316
Kzo9I GATC 3 cut(s) 198, 240, 420
LpnPI CCDG 7 cut(s) 123, 219, 285, 309, 312, 315, 342
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 155, 189
MaeIII GTNAC 1 cut(s) 19
MalI GATC 3 cut(s) 200, 242, 422
MboI GATC 3 cut(s) 198, 240, 420
MboII GAAGA 1 cut(s) 391
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 130, 137
MluCI AATT 3 cut(s) 118, 260, 392
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 5 cut(s) 88, 200, 230, 399, 425
MseI TTAA 2 cut(s) 186, 353
MspA1I CMGCKG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 300, 330
MunI CAATTG 1 cut(s) 392
MvaI CCWGG 2 cut(s) 300, 330
MwoI GCNNNNNNNGC 1 cut(s) 295
NdeII GATC 3 cut(s) 198, 240, 420
NlaIII CATG 2 cut(s) 293, 316
NlaIV GGNNCC 2 cut(s) 256, 422
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 293
PfeI GAWTC 1 cut(s) 404
PkrI GCNGC 2 cut(s) 6, 9
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PsiI TTATAA 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 298, 328
PspGI CCWGG 2 cut(s) 298, 328
PspN4I GGNNCC 2 cut(s) 256, 422
PspPI GGNCC 2 cut(s) 296, 326
PsrI GAACNNNNNNTAC 2 cut(s) 238, 270
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SacI GAGCTC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 186, 353
SatI GCNGC 2 cut(s) 5, 8
Sau3AI GATC 3 cut(s) 198, 240, 420
Sau96I GGNCC 2 cut(s) 296, 326
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 300, 330
SduI GDGCHC 2 cut(s) 130, 137
SetI ASST 5 cut(s) 9, 64, 99, 130, 278
SfaNI GCATC 2 cut(s) 155, 189
Sse9I AATT 3 cut(s) 118, 260, 392
SsiI CCGC 2 cut(s) 54, 178
SstI GAGCTC 1 cut(s) 130
StyD4I CCNGG 2 cut(s) 298, 328
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 112, 364
TaqI TCGA 1 cut(s) 70
TasI AATT 3 cut(s) 118, 260, 392
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 2 cut(s) 186, 353
Tru9I TTAA 2 cut(s) 186, 353
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 4, 7
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 1 cut(s) 223
VneI GTGCAC 1 cut(s) 133
XapI RAATTY 2 cut(s) 118, 260
XceI RCATGY 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.