Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001272.1

Orthogroup ID

OG0005159

Physical Location & Seq

Genomic Coordinates Reverse (-)

60474 .. 62055

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001272.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggcatctgctgcgacttcaatctcggtgcaatttcttcaaacccaaaaagggagcaatcttgttccttgtgctcgtcatgttcagctgaattccaaagctttctttggtgggaggttgcagaccacgactggtgtgttatgcaaacgcaggcctcgctgcgcatcggtttctgtgaagcctcggacaatggtgtgcgtcaactctatagcaaatgaggtagaggagcagctgcaagccaaagtcacaacaaagtgcttttttgatatagacattggcggtgaagctgttggtcgggttgtgattggtctttttggtgaggctgttcctaaaacagtagagaatttccgagctctgtgcacaggagagaaaggatatggttataaaggatgctctttccaccgcatcattaaggattttatgatccaaggaggggatttcactgaaggagatggaactggagggatcagtatctatggttccaaatttgaagatgagagctttgctttgaagcatgttgggcctggtgtattgagcatggctaatgcaggccctggtactaatgggagtcagttttttatctgcacagtaaagactccatggttggacaatcgacacgttgtgtttggacatatacttgagggaatggatgttgtgcggaaacttgaatcccaagagacaagtaggtcagatgtccctcgcttgccatgcagaattgtaaactgtggagagttggttattgatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

249

Amino Acids

26.9

Weight (kDa)

8.52

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62030 AT3G62030 AT3G62030
fragaria_vesca	FvH4_1g26090
malus_domestica	MD10G1124600.v1.1 MD17G1286000.v1.1
prunus_persica	Prupe.3G001000_v2.0.a1 Prupe.3G001000_v2.0.a1
pyrus_communis	pycom17g28180
rosa_chinensis	RchiOBHm_Chr2g0135271 RchiOBHm_Chr2g0163561 RchiOBHm_Chr3g0485561 RchiOBHm_Chr3g0491891 RchiOBHm_Chr7g0181211
rosa_multiflora	Rmu_sc0001272.1_g000012 Rmu_sc0004711.1_g000017 Rmu_sc0008124.1_g000023 Rmu_sc0011240.1_g000010
rosa_roxburghii	Rroxscaffold_6G00396620 Rroxscaffold_6G00396920
rosa_rugosa	Rorug03G0220100
rosa_samantha	Rh3BG085100 Rh3BG304200 Rh3CG085300 Rh3CG302500 Rh3DG299100 Rh4CG129700 Rh7DG041000
rosa_wichuraiana	Rw3G023950 Rw3G024060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AasI	GACNNNNNNGTC	1 cut(s)	685
Acc16I	TGCGCA	1 cut(s)	163
AciI	CCGC	3 cut(s)	279, 403, 658
AclWI	GGATC	2 cut(s)	418, 473
AcsI	RAATTY	3 cut(s)	91, 343, 485
AcuI	CTGAAG	1 cut(s)	465
AdeI	CACNNNGTG	1 cut(s)	622
AfaI	GTAC	1 cut(s)	559
AfiI	CCNNNNNNNGG	2 cut(s)	51, 433
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	5 cut(s)	21, 41, 491, 511, 668
AjnI	CCWGG	2 cut(s)	523, 553
AluBI	AGCT	6 cut(s)	88, 101, 232, 287, 353, 501
AluI	AGCT	6 cut(s)	88, 101, 232, 287, 353, 501
Alw21I	GWGCWC	3 cut(s)	76, 355, 362
Alw26I	GTCTC	1 cut(s)	671
Alw44I	GTGCAC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	418, 473
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	3 cut(s)	152, 521, 550
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	4 cut(s)	11, 159, 229, 232
ApoI	RAATTY	3 cut(s)	91, 343, 485
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	521, 551
AsuHPI	GGTGA	2 cut(s)	293, 329
BaeGI	GKGCMC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	3 cut(s)	76, 355, 362
BbvI	GCAGC	3 cut(s)	146, 219, 241
BccI	CCATC	2 cut(s)	446, 737
BcgI	CGANNNNNNTGC	2 cut(s)	339, 373
BciT130I	CCWGG	2 cut(s)	525, 555
BcoDI	GTCTC	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	4 cut(s)	12, 160, 230, 233
BlsI	GCNGC	4 cut(s)	13, 161, 231, 234
Bme1390I	CCNGG	2 cut(s)	525, 555
BmgT120I	GGNCC	2 cut(s)	521, 551
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	2 cut(s)	525, 555
BmsI	GCATC	4 cut(s)	14, 173, 380, 414
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	659
BsaBI	GATNNNNATC	1 cut(s)	470
BsaJI	CCNNGG	4 cut(s)	182, 427, 553, 599
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 433
Bse1I	ACTGG	2 cut(s)	136, 463
Bse8I	GATNNNNATC	1 cut(s)	470
BseBI	CCWGG	2 cut(s)	525, 555
BseDI	CCNNGG	4 cut(s)	182, 427, 553, 599
BseGI	GGATG	2 cut(s)	395, 655
BseJI	GATNNNNATC	1 cut(s)	470
BseLI	CCNNNNNNNGG	2 cut(s)	51, 433
BseNI	ACTGG	2 cut(s)	136, 463
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	146, 219, 241
BsgI	GTGCAG	1 cut(s)	568
BshFI	GGCC	3 cut(s)	154, 523, 552
BsiHKAI	GWGCWC	3 cut(s)	76, 355, 362
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	2 cut(s)	51, 433
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	3 cut(s)	154, 523, 552
Bsp1286I	GDGCHC	3 cut(s)	76, 355, 362
Bsp143I	GATC	2 cut(s)	423, 465
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	3 cut(s)	279, 403, 658
BspANI	GGCC	3 cut(s)	154, 523, 552
BspLI	GGNNCC	1 cut(s)	481
BspPI	GGATC	2 cut(s)	418, 473
BsrI	ACTGG	2 cut(s)	136, 463
BssECI	CCNNGG	4 cut(s)	182, 427, 553, 599
BssMI	GATC	2 cut(s)	423, 465
BssT1I	CCWWGG	2 cut(s)	427, 599
Bst2UI	CCWGG	2 cut(s)	525, 555
Bst4CI	ACNGT	3 cut(s)	337, 589, 725
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	152, 237, 550, 704
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	2 cut(s)	395, 655
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	426, 468
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	2 cut(s)	423, 465
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 156, 520, 708
BstNI	CCWGG	2 cut(s)	525, 555
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	523, 553
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	146, 219, 241
BsuRI	GGCC	3 cut(s)	154, 523, 552
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	395, 655
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	4 cut(s)	152, 237, 550, 704
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	521, 551
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	558
CviAII	CATG	5 cut(s)	80, 515, 538, 600, 708
CviQI	GTAC	1 cut(s)	558
DpnI	GATC	2 cut(s)	425, 467
DpnII	GATC	2 cut(s)	423, 465
DraIII	CACNNNGTG	1 cut(s)	622
DrdI	GACNNNNNNGTC	1 cut(s)	685
DseDI	GACNNNNNNGTC	1 cut(s)	685
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	427, 599
Eco147I	AGGCCT	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	465
EcoICRI	GAGCTC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	523, 553
EcoT14I	CCWWGG	2 cut(s)	427, 599
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	427, 599
FaeI	CATG	5 cut(s)	83, 518, 541, 603, 711
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	5 cut(s)	79, 514, 537, 599, 707
Fnu4HI	GCNGC	4 cut(s)	12, 160, 230, 233
FokI	GGATG	2 cut(s)	402, 662
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	4 cut(s)	12, 160, 230, 233
FspI	TGCGCA	1 cut(s)	163
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	4 cut(s)	12, 160, 230, 233
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	154, 523, 552
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	5 cut(s)	83, 518, 541, 603, 711
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	3 cut(s)	568, 595, 668
HphI	GGTGA	2 cut(s)	293, 329
Hpy166II	GTNNAC	3 cut(s)	202, 360, 721
Hpy188I	TCNGA	3 cut(s)	186, 350, 691
Hpy8I	GTNNAC	3 cut(s)	202, 360, 721
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	3 cut(s)	337, 589, 725
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	8 cut(s)	31, 121, 144, 235, 360, 548, 585, 711
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 156, 520, 708
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	5 cut(s)	83, 518, 541, 603, 711
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	423, 465
LmnI	GCTCC	2 cut(s)	54, 226
LpnPI	CCDG	9 cut(s)	117, 136, 348, 444, 510, 534, 537, 540, 567
Lsp1109I	GCAGC	3 cut(s)	146, 219, 241
LweI	GCATC	4 cut(s)	14, 173, 380, 414
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	425, 467
MboI	GATC	2 cut(s)	423, 465
MboII	GAAGA	2 cut(s)	29, 503
MhlI	GDGCHC	3 cut(s)	76, 355, 362
MluCI	AATT	5 cut(s)	32, 91, 343, 485, 714
MlyI	GAGTC	2 cut(s)	577, 589
MmeI	TCCRAC	1 cut(s)	585
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	2 cut(s)	88, 232
MspR9I	CCNGG	2 cut(s)	525, 555
MvaI	CCWGG	2 cut(s)	525, 555
MwoI	GCNNNNNNNGC	4 cut(s)	11, 156, 520, 708
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	2 cut(s)	423, 465
NlaIII	CATG	5 cut(s)	83, 518, 541, 603, 711
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	163
NspI	RCATGY	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	4 cut(s)	13, 161, 231, 234
PleI	GAGTC	2 cut(s)	576, 589
PpsI	GAGTC	2 cut(s)	576, 589
PsiI	TTATAA	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	523, 553
PspGI	CCWGG	2 cut(s)	523, 553
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	521, 551
PsrI	GAACNNNNNNTAC	2 cut(s)	463, 495
PstNI	CAGNNNCTG	1 cut(s)	554
PvuII	CAGCTG	2 cut(s)	88, 232
RsaI	GTAC	1 cut(s)	559
RsaNI	GTAC	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	4 cut(s)	12, 160, 230, 233
Sau3AI	GATC	2 cut(s)	423, 465
Sau96I	GGNCC	2 cut(s)	521, 551
SchI	GAGTC	2 cut(s)	577, 589
ScrFI	CCNGG	2 cut(s)	525, 555
SduI	GDGCHC	3 cut(s)	76, 355, 362
SfaNI	GCATC	4 cut(s)	14, 173, 380, 414
SfcI	CTRYAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	5 cut(s)	32, 91, 343, 485, 714
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	279, 403, 658
SstI	GAGCTC	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	523, 553
StyI	CCWWGG	2 cut(s)	427, 599
TaaI	ACNGT	3 cut(s)	337, 589, 725
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	613
TasI	AATT	5 cut(s)	32, 91, 343, 485, 714
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	4 cut(s)	11, 159, 229, 232
Tsp45I	GTSAC	1 cut(s)	244
TspRI	CASTG	1 cut(s)	448
VneI	GTGCAC	1 cut(s)	358
XapI	RAATTY	3 cut(s)	91, 343, 485
XceI	RCATGY	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.