Rh3CG302500

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005159
Physical Location & Seq
Forward (+)
31470171 .. 31472175
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG302500.1

Sequence Viewer

Length: 558 bp
ATGGCATCTGCTGCGACTTCAATCTCGGTGCAATTTCTTCAAACCCAAAAAGGGAGCAATCTTGTTCCTTGTGCTCGTCATGTTCAGCTGAATTCCAAAGCTTTCTTTGGTGGGAGGTTGCAGACCGCGACTGGTGTGTTATGCAAACGCAGGCCTCGCTGCGCATCGGTTTCTGTGAAGCCTCGGACAATGGTGTGCGTCAACTCTATAGCAAATGAGGTAGAGGAGCAGCTGCAAGCCAAAGTCACAACAAAGTGCTTTTTTGATATAGACATTGGTGGTGAAGCTGTTGGTCGGGTTGTGATTGGACTTTTTGGTGAGGTTGTTCCTAAAACAGTAGAGAATTTCCGAGCTCTGTGCACAGGAGAGAAAGGATATGGTTATAAAGGATGCTCTTTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGGATTTCACTGAAGGAGATGGAACAGGAGGGATCAGTATCTATGGTTCCAAATTTGAAGATGAGAGCTTTGCTTGTATGTACTTGTCAGAGAAAAACAATAGAGCCTATTACTATTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

185

Amino Acids

20.35

Weight (kDa)

8.77

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 88 - 168 4.3e-19 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
Acc16I TGCGCA 1 cut(s) 163
AccII CGCG 1 cut(s) 128
AciI CCGC 2 cut(s) 126, 403
AclWI GGATC 2 cut(s) 418, 473
AcsI RAATTY 3 cut(s) 91, 343, 485
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 51, 433
AgsI TTSAA 3 cut(s) 21, 41, 491
AluBI AGCT 6 cut(s) 88, 101, 232, 287, 353, 501
AluI AGCT 6 cut(s) 88, 101, 232, 287, 353, 501
Alw21I GWGCWC 3 cut(s) 76, 355, 362
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 2 cut(s) 418, 473
AoxI GGCC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 4 cut(s) 11, 159, 229, 232
ApoI RAATTY 3 cut(s) 91, 343, 485
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 293, 329
BaeGI GKGCMC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 355
Bbv12I GWGCWC 3 cut(s) 76, 355, 362
BbvI GCAGC 3 cut(s) 146, 219, 241
BccI CCATC 1 cut(s) 446
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 4 cut(s) 12, 160, 230, 233
BlsI GCNGC 4 cut(s) 13, 161, 231, 234
BmiI GGNNCC 1 cut(s) 481
BmsI GCATC 4 cut(s) 14, 173, 380, 414
BsaBI GATNNNNATC 1 cut(s) 470
BsaJI CCNNGG 2 cut(s) 182, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 433
Bse1I ACTGG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 182, 427
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 51, 433
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 3 cut(s) 146, 219, 241
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 3 cut(s) 76, 355, 362
BslI CCNNNNNNNGG 2 cut(s) 51, 433
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 3 cut(s) 76, 355, 362
Bsp143I GATC 2 cut(s) 423, 465
BspACI CCGC 2 cut(s) 126, 403
BspANI GGCC 1 cut(s) 154
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 481
BspPI GGATC 2 cut(s) 418, 473
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 182, 427
BssMI GATC 2 cut(s) 423, 465
BssT1I CCWWGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 337
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 152, 237
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 426, 468
BstMBI GATC 2 cut(s) 423, 465
BstMWI GCNNNNNNNGC 2 cut(s) 11, 156
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 362
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 146, 219, 241
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 152, 237
CfoI GCGC 1 cut(s) 164
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 514
CviAII CATG 1 cut(s) 80
CviQI GTAC 1 cut(s) 514
DpnI GATC 2 cut(s) 425, 467
DpnII GATC 2 cut(s) 423, 465
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 427
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 1 cut(s) 83
FaiI YATR 9 cut(s) 81, 142, 209, 269, 378, 384, 422, 477, 512
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 4 cut(s) 12, 160, 230, 233
FokI GGATG 1 cut(s) 402
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 4 cut(s) 12, 160, 230, 233
FspI TGCGCA 1 cut(s) 163
GlaI GCGC 1 cut(s) 163
GluI GCNGC 4 cut(s) 12, 160, 230, 233
HaeIII GGCC 1 cut(s) 154
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 164
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 99
HphI GGTGA 2 cut(s) 293, 329
Hpy166II GTNNAC 2 cut(s) 202, 360
Hpy188I TCNGA 3 cut(s) 186, 350, 523
Hpy8I GTNNAC 2 cut(s) 202, 360
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 5 cut(s) 31, 121, 144, 235, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 156
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 423, 465
LmnI GCTCC 2 cut(s) 54, 226
LpnPI CCDG 4 cut(s) 117, 136, 348, 444
Lsp1109I GCAGC 3 cut(s) 146, 219, 241
LweI GCATC 4 cut(s) 14, 173, 380, 414
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 425, 467
MboI GATC 2 cut(s) 423, 465
MboII GAAGA 2 cut(s) 29, 503
MhlI GDGCHC 3 cut(s) 76, 355, 362
MluCI AATT 4 cut(s) 32, 91, 343, 485
MnlI CCTC 8 cut(s) 108, 165, 192, 211, 217, 313, 425, 455
MseI TTAA 1 cut(s) 411
MspA1I CMGCKG 2 cut(s) 88, 232
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 11, 156
NdeII GATC 2 cut(s) 423, 465
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 244
NsbI TGCGCA 1 cut(s) 163
PceI AGGCCT 1 cut(s) 154
PkrI GCNGC 4 cut(s) 13, 161, 231, 234
PsiI TTATAA 1 cut(s) 384
Psp124BI GAGCTC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 481
PsrI GAACNNNNNNTAC 2 cut(s) 463, 495
PvuII CAGCTG 2 cut(s) 88, 232
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 4 cut(s) 12, 160, 230, 233
Sau3AI GATC 2 cut(s) 423, 465
SduI GDGCHC 3 cut(s) 76, 355, 362
SetI ASST 9 cut(s) 90, 103, 119, 222, 234, 289, 324, 355, 503
SfaNI GCATC 4 cut(s) 14, 173, 380, 414
SfcI CTRYAG 1 cut(s) 207
Sse9I AATT 4 cut(s) 32, 91, 343, 485
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 2 cut(s) 126, 403
SstI GAGCTC 1 cut(s) 355
StuI AGGCCT 1 cut(s) 154
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 337
TasI AATT 4 cut(s) 32, 91, 343, 485
TatI WGTACW 1 cut(s) 513
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 4 cut(s) 11, 159, 229, 232
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 1 cut(s) 448
VneI GTGCAC 1 cut(s) 358
XapI RAATTY 3 cut(s) 91, 343, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.